Wall clock time and date at job start Tue Mar 31 2020 14:55:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86800 * 120.00018 * 2 1 4 4 H 1.48506 * 109.47088 * 239.99567 * 3 2 1 5 5 H 1.48491 * 109.47388 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47105 * 120.00251 * 3 2 1 7 7 C 1.37874 * 119.99848 * 179.97438 * 2 1 3 8 8 H 1.08006 * 120.00185 * 185.15297 * 7 2 1 9 9 C 1.50701 * 120.00115 * 5.16142 * 7 2 1 10 10 H 1.08995 * 109.47146 * 335.03986 * 9 7 2 11 11 C 1.50703 * 109.47088 * 215.04563 * 9 7 2 12 12 O 1.21299 * 119.99575 * 240.00002 * 11 9 7 13 13 N 1.34768 * 120.00332 * 59.71825 * 11 9 7 14 14 C 1.40106 * 120.00303 * 175.14312 * 13 11 9 15 15 C 1.38844 * 120.00143 * 326.73744 * 14 13 11 16 16 C 1.38166 * 120.06656 * 179.71656 * 15 14 13 17 17 C 1.38560 * 120.11978 * 0.55022 * 16 15 14 18 18 C 1.39278 * 119.94299 * 359.72654 * 17 16 15 19 19 C 1.38495 * 119.89423 * 359.97438 * 18 17 16 20 20 O 1.36511 * 108.64306 * 179.97438 * 18 17 16 21 21 C 1.43985 * 105.49739 * 342.69938 * 20 18 17 22 22 O 1.36597 * 131.44086 * 179.72033 * 17 16 15 23 23 C 1.50699 * 109.47227 * 95.04313 * 9 7 2 24 24 C 1.38238 * 119.99948 * 53.50305 * 23 9 7 25 25 C 1.38238 * 119.99577 * 179.81158 * 24 23 9 26 26 C 1.38233 * 120.00094 * 0.39189 * 25 24 23 27 27 C 1.38233 * 119.99989 * 359.85959 * 26 25 24 28 28 C 1.38231 * 120.00255 * 359.95468 * 27 26 25 29 29 H 0.97005 * 119.99771 * 0.02562 * 1 2 3 30 30 H 0.97001 * 119.99752 * 355.15375 * 13 11 9 31 31 H 1.08001 * 119.96205 * 359.97438 * 15 14 13 32 32 H 1.08004 * 119.94008 * 180.27599 * 16 15 14 33 33 H 1.08005 * 120.00822 * 179.97438 * 19 18 17 34 34 H 1.09001 * 110.57483 * 268.59491 * 21 20 18 35 35 H 1.08998 * 110.56797 * 145.71855 * 21 20 18 36 36 H 1.07994 * 120.00124 * 359.97438 * 24 23 9 37 37 H 1.07999 * 119.99790 * 180.22515 * 25 24 23 38 38 H 1.08006 * 119.99583 * 179.83314 * 26 25 24 39 39 H 1.07999 * 119.99602 * 179.97438 * 27 26 25 40 40 H 1.07995 * 120.00357 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2843 2.7464 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0813 -1.1960 0.0845 9 6 1.2555 -2.4966 -0.1163 10 1 0.2360 -2.3631 0.2453 11 6 1.9477 -3.5498 0.7100 12 8 2.3736 -4.5540 0.1792 13 7 2.0985 -3.3736 2.0375 14 6 2.6498 -4.3953 2.8218 15 6 2.4186 -5.7243 2.4930 16 6 2.9664 -6.7330 3.2621 17 6 3.7383 -6.4217 4.3698 18 6 3.9672 -5.0894 4.7054 19 6 3.4228 -4.0790 3.9303 20 8 4.7476 -5.0493 5.8247 21 6 4.6548 -6.3634 6.4058 22 8 4.3763 -7.2163 5.2794 23 6 1.2241 -2.9303 -1.5592 24 6 2.4017 -3.0330 -2.2759 25 6 2.3732 -3.4346 -3.5983 26 6 1.1663 -3.7257 -4.2063 27 6 -0.0117 -3.6180 -3.4911 28 6 0.0172 -3.2201 -2.1676 29 1 -0.4850 0.8401 -0.0004 30 1 1.8252 -2.5393 2.4501 31 1 1.8134 -5.9698 1.6329 32 1 2.7889 -7.7661 3.0019 33 1 3.5988 -3.0453 4.1891 34 1 3.8406 -6.4057 7.1292 35 1 5.5990 -6.6429 6.8733 36 1 3.3442 -2.8020 -1.8019 37 1 3.2935 -3.5183 -4.1572 38 1 1.1439 -4.0369 -5.2403 39 1 -0.9545 -3.8450 -3.9663 40 1 -0.9031 -3.1363 -1.6087 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001348696274.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:55:06 Heat of formation + Delta-G solvation = -43.696060 kcal Electronic energy + Delta-G solvation = -26519.496115 eV Core-core repulsion = 22651.245313 eV Total energy + Delta-G solvation = -3868.250801 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.115 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.06653 -39.83840 -38.29130 -37.04736 -36.21945 -33.92258 -33.64354 -31.21455 -30.38487 -30.00990 -29.01118 -27.29305 -25.67692 -24.13682 -23.03250 -22.63261 -21.67256 -20.96127 -19.57645 -18.07243 -17.76969 -17.25753 -16.92903 -16.72799 -15.94290 -15.81054 -15.20288 -14.65822 -14.48220 -14.36070 -14.01562 -13.97017 -13.78307 -13.32711 -13.05961 -12.94550 -12.80825 -12.71739 -12.52649 -12.37042 -11.74586 -11.70666 -11.29266 -11.14429 -11.09574 -10.90648 -10.47571 -10.36156 -10.09676 -9.58608 -9.51920 -8.94368 -8.74528 -8.56703 -8.02049 -7.71467 -7.48753 -6.37881 -4.44915 1.27054 1.34043 2.29432 2.32149 2.75571 3.16300 3.22341 3.23188 3.37098 3.39797 3.76065 3.95102 4.21025 4.59638 4.60374 4.73217 4.82167 5.00098 5.18114 5.20306 5.38093 5.61662 5.66548 5.71213 5.78467 5.87332 6.03726 6.13583 6.16069 6.24651 6.41512 6.47623 6.50143 6.54242 6.77021 6.88478 6.99031 7.08486 7.29385 7.30376 7.36889 7.52544 7.65209 7.85119 7.94609 8.06698 8.59056 8.93386 9.22044 10.70355 Molecular weight = 325.11amu Principal moments of inertia in cm(-1) A = 0.012670 B = 0.003760 C = 0.003090 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2209.412724 B = 7445.870028 C = 9058.442346 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.877 5.877 2 C 0.078 3.922 3 Si 0.899 3.101 4 H -0.273 1.273 5 H -0.285 1.285 6 H -0.273 1.273 7 C -0.523 4.523 8 H 0.064 0.936 9 C 0.052 3.948 10 H 0.098 0.902 11 C 0.530 3.470 12 O -0.542 6.542 13 N -0.668 5.668 14 C 0.182 3.818 15 C -0.117 4.117 16 C -0.077 4.077 17 C -0.004 4.004 18 C 0.050 3.950 19 C -0.137 4.137 20 O -0.311 6.311 21 C 0.214 3.786 22 O -0.313 6.313 23 C -0.015 4.015 24 C -0.084 4.084 25 C -0.134 4.134 26 C -0.146 4.146 27 C -0.132 4.132 28 C -0.119 4.119 29 H 0.269 0.731 30 H 0.420 0.580 31 H 0.151 0.849 32 H 0.135 0.865 33 H 0.138 0.862 34 H 0.080 0.920 35 H 0.126 0.874 36 H 0.112 0.888 37 H 0.107 0.893 38 H 0.106 0.894 39 H 0.107 0.893 40 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.663 -8.328 7.250 11.358 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.513 5.513 2 C -0.128 4.128 3 Si 0.726 3.274 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.199 1.199 7 C -0.560 4.560 8 H 0.082 0.918 9 C 0.031 3.969 10 H 0.116 0.884 11 C 0.321 3.679 12 O -0.419 6.419 13 N -0.313 5.313 14 C 0.086 3.914 15 C -0.138 4.138 16 C -0.096 4.096 17 C -0.048 4.048 18 C 0.005 3.995 19 C -0.158 4.158 20 O -0.227 6.227 21 C 0.102 3.898 22 O -0.230 6.230 23 C -0.016 4.016 24 C -0.102 4.102 25 C -0.152 4.152 26 C -0.165 4.165 27 C -0.150 4.150 28 C -0.137 4.137 29 H 0.079 0.921 30 H 0.258 0.742 31 H 0.168 0.832 32 H 0.152 0.848 33 H 0.156 0.844 34 H 0.097 0.903 35 H 0.144 0.856 36 H 0.130 0.870 37 H 0.125 0.875 38 H 0.124 0.876 39 H 0.125 0.875 40 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 2.931 -8.909 6.901 11.644 hybrid contribution 0.473 1.424 0.371 1.545 sum 3.404 -7.486 7.271 10.977 Atomic orbital electron populations 1.69854 1.06042 1.27834 1.47520 1.24951 0.94910 0.99538 0.93391 0.86526 0.79648 0.82149 0.79101 1.19825 1.21011 1.19865 1.20652 0.93347 0.88449 1.53543 0.91818 1.18148 0.99808 0.91502 0.87482 0.88407 1.22008 0.77395 0.87633 0.80833 1.90613 1.48921 1.30980 1.71341 1.43763 1.61869 1.17510 1.08157 1.17429 0.93959 0.89126 0.90928 1.21014 1.01869 0.90196 1.00713 1.19910 0.96442 1.00477 0.92772 1.19684 1.00973 0.87788 0.96395 1.19340 0.95607 0.93763 0.90746 1.19674 1.00299 0.98528 0.97330 1.87335 1.64511 1.33187 1.37687 1.25532 1.02864 0.73032 0.88347 1.87339 1.73737 1.34703 1.27199 1.20005 0.92215 0.92433 0.96994 1.20843 0.98336 0.97723 0.93341 1.20971 0.97105 1.01599 0.95504 1.20824 0.93045 1.03606 0.98990 1.20911 0.97295 1.01855 0.94902 1.20997 0.97760 1.00084 0.94867 0.92064 0.74238 0.83169 0.84754 0.84392 0.90261 0.85613 0.87038 0.87511 0.87631 0.87459 0.86888 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -22.08 12.77 55.43 0.71 -21.37 16 2 C 0.08 1.88 5.45 -17.82 -0.10 1.78 16 3 Si 0.90 19.30 29.54 -169.99 -5.02 14.28 16 4 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 5 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 6 H -0.27 -5.75 7.11 56.52 0.40 -5.35 16 7 C -0.52 -12.40 7.38 -34.44 -0.25 -12.65 16 8 H 0.06 1.53 7.82 -52.48 -0.41 1.12 16 9 C 0.05 1.15 2.46 -94.07 -0.23 0.92 16 10 H 0.10 2.30 6.99 -51.93 -0.36 1.94 16 11 C 0.53 11.00 6.79 -10.99 -0.07 10.92 16 12 O -0.54 -12.12 13.11 5.54 0.07 -12.04 16 13 N -0.67 -11.90 5.27 -9.84 -0.05 -11.95 16 14 C 0.18 3.02 6.28 -83.64 -0.53 2.50 16 15 C -0.12 -1.90 8.65 -39.38 -0.34 -2.24 16 16 C -0.08 -1.11 10.05 -39.49 -0.40 -1.51 16 17 C 0.00 -0.06 7.15 -39.08 -0.28 -0.34 16 18 C 0.05 0.76 7.15 -39.10 -0.28 0.48 16 19 C -0.14 -2.08 9.97 -39.28 -0.39 -2.47 16 20 O -0.31 -4.25 11.40 -45.73 -0.52 -4.77 16 21 C 0.21 2.17 8.89 101.05 0.90 3.07 16 22 O -0.31 -4.20 11.41 -46.01 -0.52 -4.72 16 23 C -0.02 -0.34 4.29 -104.62 -0.45 -0.79 16 24 C -0.08 -1.82 8.33 -39.58 -0.33 -2.15 16 25 C -0.13 -2.54 10.05 -39.58 -0.40 -2.94 16 26 C -0.15 -2.61 10.05 -39.59 -0.40 -3.01 16 27 C -0.13 -2.42 10.05 -39.59 -0.40 -2.82 16 28 C -0.12 -2.46 9.67 -39.58 -0.38 -2.84 16 29 H 0.27 6.55 8.31 -40.82 -0.34 6.21 16 30 H 0.42 6.97 8.62 -40.82 -0.35 6.62 16 31 H 0.15 2.58 6.40 -52.49 -0.34 2.24 16 32 H 0.13 1.63 8.06 -52.48 -0.42 1.20 16 33 H 0.14 1.89 8.06 -52.48 -0.42 1.47 16 34 H 0.08 0.63 8.14 -51.93 -0.42 0.20 16 35 H 0.13 0.85 8.14 -51.93 -0.42 0.43 16 36 H 0.11 2.44 7.88 -52.49 -0.41 2.03 16 37 H 0.11 1.74 8.06 -52.49 -0.42 1.32 16 38 H 0.11 1.56 8.06 -52.48 -0.42 1.14 16 39 H 0.11 1.66 8.06 -52.49 -0.42 1.24 16 40 H 0.11 2.24 7.96 -52.49 -0.42 1.82 16 LS Contribution 348.02 15.07 5.24 5.24 Total: -1.00 -28.30 348.02 -8.81 -37.11 By element: Atomic # 1 Polarization: 16.70 SS G_CDS: -4.39 Total: 12.31 kcal Atomic # 6 Polarization: -9.76 SS G_CDS: -4.33 Total: -14.09 kcal Atomic # 7 Polarization: -33.98 SS G_CDS: 0.66 Total: -33.33 kcal Atomic # 8 Polarization: -20.56 SS G_CDS: -0.97 Total: -21.53 kcal Atomic # 14 Polarization: 19.30 SS G_CDS: -5.02 Total: 14.28 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -28.30 -8.81 -37.11 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001348696274.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.584 kcal (2) G-P(sol) polarization free energy of solvation -28.303 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.887 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.809 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.112 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.696 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds