Wall clock time and date at job start Tue Mar 31 2020 14:55:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86800 * 120.00018 * 2 1 4 4 H 1.48506 * 109.47088 * 239.99567 * 3 2 1 5 5 H 1.48491 * 109.47388 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47105 * 120.00251 * 3 2 1 7 7 C 1.37874 * 119.99848 * 179.97438 * 2 1 3 8 8 H 1.08006 * 120.00185 * 185.15297 * 7 2 1 9 9 C 1.50701 * 120.00115 * 5.16142 * 7 2 1 10 10 H 1.08995 * 109.47146 * 335.03986 * 9 7 2 11 11 C 1.50703 * 109.47088 * 215.04563 * 9 7 2 12 12 O 1.21299 * 119.99575 * 240.00002 * 11 9 7 13 13 N 1.34768 * 120.00332 * 59.71825 * 11 9 7 14 14 C 1.40106 * 120.00303 * 175.14312 * 13 11 9 15 15 C 1.38844 * 120.00143 * 326.73744 * 14 13 11 16 16 C 1.38166 * 120.06656 * 179.71656 * 15 14 13 17 17 C 1.38560 * 120.11978 * 0.55022 * 16 15 14 18 18 C 1.39278 * 119.94299 * 359.72654 * 17 16 15 19 19 C 1.38495 * 119.89423 * 359.97438 * 18 17 16 20 20 O 1.36511 * 108.64306 * 179.97438 * 18 17 16 21 21 C 1.43985 * 105.49739 * 342.69938 * 20 18 17 22 22 O 1.36597 * 131.44086 * 179.72033 * 17 16 15 23 23 C 1.50699 * 109.47227 * 95.04313 * 9 7 2 24 24 C 1.38238 * 119.99948 * 53.50305 * 23 9 7 25 25 C 1.38238 * 119.99577 * 179.81158 * 24 23 9 26 26 C 1.38233 * 120.00094 * 0.39189 * 25 24 23 27 27 C 1.38233 * 119.99989 * 359.85959 * 26 25 24 28 28 C 1.38231 * 120.00255 * 359.95468 * 27 26 25 29 29 H 0.97005 * 119.99771 * 0.02562 * 1 2 3 30 30 H 0.97001 * 119.99752 * 355.15375 * 13 11 9 31 31 H 1.08001 * 119.96205 * 359.97438 * 15 14 13 32 32 H 1.08004 * 119.94008 * 180.27599 * 16 15 14 33 33 H 1.08005 * 120.00822 * 179.97438 * 19 18 17 34 34 H 1.09001 * 110.57483 * 268.59491 * 21 20 18 35 35 H 1.08998 * 110.56797 * 145.71855 * 21 20 18 36 36 H 1.07994 * 120.00124 * 359.97438 * 24 23 9 37 37 H 1.07999 * 119.99790 * 180.22515 * 25 24 23 38 38 H 1.08006 * 119.99583 * 179.83314 * 26 25 24 39 39 H 1.07999 * 119.99602 * 179.97438 * 27 26 25 40 40 H 1.07995 * 120.00357 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2843 2.7464 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0813 -1.1960 0.0845 9 6 1.2555 -2.4966 -0.1163 10 1 0.2360 -2.3631 0.2453 11 6 1.9477 -3.5498 0.7100 12 8 2.3736 -4.5540 0.1792 13 7 2.0985 -3.3736 2.0375 14 6 2.6498 -4.3953 2.8218 15 6 2.4186 -5.7243 2.4930 16 6 2.9664 -6.7330 3.2621 17 6 3.7383 -6.4217 4.3698 18 6 3.9672 -5.0894 4.7054 19 6 3.4228 -4.0790 3.9303 20 8 4.7476 -5.0493 5.8247 21 6 4.6548 -6.3634 6.4058 22 8 4.3763 -7.2163 5.2794 23 6 1.2241 -2.9303 -1.5592 24 6 2.4017 -3.0330 -2.2759 25 6 2.3732 -3.4346 -3.5983 26 6 1.1663 -3.7257 -4.2063 27 6 -0.0117 -3.6180 -3.4911 28 6 0.0172 -3.2201 -2.1676 29 1 -0.4850 0.8401 -0.0004 30 1 1.8252 -2.5393 2.4501 31 1 1.8134 -5.9698 1.6329 32 1 2.7889 -7.7661 3.0019 33 1 3.5988 -3.0453 4.1891 34 1 3.8406 -6.4057 7.1292 35 1 5.5990 -6.6429 6.8733 36 1 3.3442 -2.8020 -1.8019 37 1 3.2935 -3.5183 -4.1572 38 1 1.1439 -4.0369 -5.2403 39 1 -0.9545 -3.8450 -3.9663 40 1 -0.9031 -3.1363 -1.6087 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001348696274.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:55:05 Heat of formation + Delta-G solvation = -58.848152 kcal Electronic energy + Delta-G solvation = -26520.153159 eV Core-core repulsion = 22651.245313 eV Total energy + Delta-G solvation = -3868.907845 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.115 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -43.12772 -41.35162 -39.74788 -38.42221 -37.26442 -35.60952 -35.14986 -32.91993 -31.57743 -31.53220 -30.28675 -28.84586 -26.65382 -25.86094 -24.27349 -23.89663 -23.20671 -22.39390 -21.11677 -19.32162 -18.84804 -18.76852 -18.36393 -18.02532 -17.45460 -17.12012 -16.44845 -16.34634 -15.98770 -15.59902 -15.51582 -15.34495 -14.88767 -14.72511 -14.62262 -14.15547 -14.03853 -13.99695 -13.91181 -13.81605 -13.40015 -13.30540 -12.85836 -12.77691 -12.45655 -12.18996 -12.07997 -11.96736 -11.67006 -11.30361 -10.84890 -10.71541 -10.47404 -9.77171 -9.55892 -9.28561 -8.73544 -8.23461 -6.34750 0.03686 0.15104 0.75315 0.78884 1.44044 1.46492 1.52166 1.64315 1.85467 2.23617 2.41272 2.60106 2.66216 3.06373 3.25980 3.45785 3.83591 3.97392 4.05365 4.13034 4.22590 4.28121 4.30501 4.36769 4.46232 4.52331 4.53218 4.71796 4.87677 4.95961 4.98158 5.06563 5.10795 5.21406 5.29989 5.36692 5.44742 5.63135 5.69011 5.79167 5.82661 5.91884 6.11883 6.21090 6.39001 6.55300 6.72690 7.30917 7.36631 8.84298 Molecular weight = 325.11amu Principal moments of inertia in cm(-1) A = 0.012670 B = 0.003760 C = 0.003090 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2209.412724 B = 7445.870028 C = 9058.442346 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.041 3.959 3 Si 0.950 3.050 4 H -0.280 1.280 5 H -0.283 1.283 6 H -0.265 1.265 7 C -0.522 4.522 8 H 0.054 0.946 9 C 0.054 3.946 10 H 0.078 0.922 11 C 0.532 3.468 12 O -0.562 6.562 13 N -0.660 5.660 14 C 0.161 3.839 15 C -0.126 4.126 16 C -0.075 4.075 17 C -0.001 4.001 18 C 0.046 3.954 19 C -0.136 4.136 20 O -0.321 6.321 21 C 0.204 3.796 22 O -0.321 6.321 23 C -0.041 4.041 24 C -0.109 4.109 25 C -0.136 4.136 26 C -0.142 4.142 27 C -0.129 4.129 28 C -0.141 4.141 29 H 0.269 0.731 30 H 0.423 0.577 31 H 0.136 0.864 32 H 0.158 0.842 33 H 0.150 0.850 34 H 0.106 0.894 35 H 0.163 0.837 36 H 0.095 0.905 37 H 0.134 0.866 38 H 0.146 0.854 39 H 0.140 0.860 40 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.473 -9.168 7.361 12.260 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.162 4.162 3 Si 0.776 3.224 4 H -0.205 1.205 5 H -0.208 1.208 6 H -0.189 1.189 7 C -0.560 4.560 8 H 0.072 0.928 9 C 0.033 3.967 10 H 0.096 0.904 11 C 0.323 3.677 12 O -0.440 6.440 13 N -0.305 5.305 14 C 0.065 3.935 15 C -0.146 4.146 16 C -0.094 4.094 17 C -0.046 4.046 18 C 0.001 3.999 19 C -0.157 4.157 20 O -0.238 6.238 21 C 0.094 3.906 22 O -0.238 6.238 23 C -0.042 4.042 24 C -0.128 4.128 25 C -0.154 4.154 26 C -0.159 4.159 27 C -0.147 4.147 28 C -0.159 4.159 29 H 0.078 0.922 30 H 0.262 0.738 31 H 0.154 0.846 32 H 0.175 0.825 33 H 0.167 0.833 34 H 0.124 0.876 35 H 0.180 0.820 36 H 0.114 0.886 37 H 0.152 0.848 38 H 0.164 0.836 39 H 0.158 0.842 40 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 3.755 -9.758 7.059 12.616 hybrid contribution 0.272 1.553 0.419 1.631 sum 4.027 -8.205 7.478 11.810 Atomic orbital electron populations 1.69947 1.07006 1.28231 1.48739 1.25514 0.95471 1.01867 0.93321 0.85723 0.78565 0.79194 0.78936 1.20518 1.20812 1.18922 1.20721 0.92886 0.89358 1.53036 0.92753 1.18024 0.98613 0.91606 0.88457 0.90393 1.21685 0.77315 0.87035 0.81676 1.90583 1.49947 1.31505 1.72011 1.43539 1.61548 1.18026 1.07380 1.17537 0.95329 0.88893 0.91713 1.20948 1.02329 0.90593 1.00752 1.20053 0.95850 1.01128 0.92351 1.19811 1.00363 0.88019 0.96412 1.19425 0.95531 0.93768 0.91197 1.19716 0.99867 0.99400 0.96743 1.87322 1.64074 1.35183 1.37202 1.26158 1.06013 0.71034 0.87405 1.87329 1.73326 1.35304 1.27812 1.20083 0.93259 0.94003 0.96884 1.20864 0.97435 0.99629 0.94850 1.21326 0.99071 1.00405 0.94556 1.21284 0.92046 1.01924 1.00687 1.21311 0.99243 1.00258 0.93863 1.21161 0.97162 1.01242 0.96349 0.92168 0.73835 0.84616 0.82482 0.83259 0.87639 0.81952 0.88638 0.84807 0.83614 0.84180 0.87165 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -46.60 12.77 21.45 0.27 -46.33 16 2 C 0.04 2.03 5.45 84.65 0.46 2.49 16 3 Si 0.95 39.98 29.54 68.60 2.03 42.01 16 4 H -0.28 -11.98 7.11 99.48 0.71 -11.27 16 5 H -0.28 -11.73 7.11 99.48 0.71 -11.03 16 6 H -0.26 -10.66 7.11 99.48 0.71 -9.95 16 7 C -0.52 -25.65 7.38 25.60 0.19 -25.46 16 8 H 0.05 2.71 7.82 -2.91 -0.02 2.69 16 9 C 0.05 2.53 2.46 -13.03 -0.03 2.50 16 10 H 0.08 3.90 6.99 -2.39 -0.02 3.88 16 11 C 0.53 23.13 6.79 87.66 0.60 23.73 16 12 O -0.56 -26.19 13.11 -3.09 -0.04 -26.23 16 13 N -0.66 -24.52 5.27 -303.43 -1.60 -26.11 16 14 C 0.16 5.45 6.28 38.10 0.24 5.69 16 15 C -0.13 -4.14 8.65 22.40 0.19 -3.95 16 16 C -0.07 -2.11 10.05 22.33 0.22 -1.88 16 17 C 0.00 -0.03 7.15 22.60 0.16 0.13 16 18 C 0.05 1.33 7.15 22.58 0.16 1.49 16 19 C -0.14 -4.11 9.97 22.47 0.22 -3.89 16 20 O -0.32 -8.11 11.40 -76.18 -0.87 -8.98 16 21 C 0.20 3.52 8.89 113.37 1.01 4.53 16 22 O -0.32 -7.84 11.41 -77.19 -0.88 -8.72 16 23 C -0.04 -1.89 4.29 -19.87 -0.09 -1.98 16 24 C -0.11 -4.81 8.33 22.27 0.19 -4.63 16 25 C -0.14 -4.98 10.05 22.27 0.22 -4.76 16 26 C -0.14 -4.67 10.05 22.27 0.22 -4.45 16 27 C -0.13 -4.53 10.05 22.27 0.22 -4.30 16 28 C -0.14 -5.92 9.67 22.27 0.22 -5.70 16 29 H 0.27 13.33 8.31 -92.70 -0.77 12.55 16 30 H 0.42 14.72 8.62 -92.71 -0.80 13.93 16 31 H 0.14 4.86 6.40 -2.91 -0.02 4.85 16 32 H 0.16 3.59 8.06 -2.91 -0.02 3.57 16 33 H 0.15 4.05 8.06 -2.91 -0.02 4.02 16 34 H 0.11 1.30 8.14 -2.39 -0.02 1.28 16 35 H 0.16 1.57 8.14 -2.39 -0.02 1.55 16 36 H 0.10 4.37 7.88 -2.91 -0.02 4.35 16 37 H 0.13 4.07 8.06 -2.91 -0.02 4.05 16 38 H 0.15 3.63 8.06 -2.91 -0.02 3.61 16 39 H 0.14 3.92 8.06 -2.91 -0.02 3.89 16 40 H 0.11 4.54 7.96 -2.91 -0.02 4.51 16 Total: -1.00 -61.95 348.02 3.62 -58.33 By element: Atomic # 1 Polarization: 36.19 SS G_CDS: 0.29 Total: 36.48 kcal Atomic # 6 Polarization: -24.86 SS G_CDS: 4.41 Total: -20.45 kcal Atomic # 7 Polarization: -71.12 SS G_CDS: -1.32 Total: -72.44 kcal Atomic # 8 Polarization: -42.14 SS G_CDS: -1.79 Total: -43.93 kcal Atomic # 14 Polarization: 39.98 SS G_CDS: 2.03 Total: 42.01 kcal Total: -61.95 3.62 -58.33 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001348696274.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.515 kcal (2) G-P(sol) polarization free energy of solvation -61.948 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.463 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.615 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.333 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.848 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds