Wall clock time and date at job start Tue Mar 31 2020 14:56:33
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.30635 * 1
3 3 Si 1.86791 * 120.00132 * 2 1
4 4 H 1.48498 * 109.47370 * 240.00408 * 3 2 1
5 5 H 1.48506 * 109.47020 * 0.02562 * 3 2 1
6 6 H 1.48505 * 109.47146 * 120.00054 * 3 2 1
7 7 C 1.40270 * 119.99910 * 180.02562 * 2 1 3
8 8 H 1.07998 * 120.00422 * 188.67951 * 7 2 1
9 9 C 1.40897 * 120.00185 * 8.68621 * 7 2 1
10 10 C 1.40710 * 120.32670 * 33.36344 * 9 7 2
11 11 C 1.37591 * 119.88057 * 180.02562 * 10 9 7
12 12 C 1.38828 * 120.57402 * 359.97438 * 11 10 9
13 13 C 1.38224 * 120.67315 * 0.02562 * 12 11 10
14 14 C 1.39226 * 120.09070 * 0.02562 * 13 12 11
15 15 C 1.47439 * 120.27893 * 180.02562 * 14 13 12
16 16 O 1.21607 * 119.99607 * 185.53805 * 15 14 13
17 17 N 1.34772 * 120.00136 * 5.53794 * 15 14 13
18 18 C 1.46496 * 120.00158 * 180.02562 * 17 15 14
19 19 C 1.50695 * 109.47619 * 179.97438 * 18 17 15
20 20 C 1.38284 * 119.98259 * 259.72480 * 19 18 17
21 21 C 1.38213 * 120.13791 * 179.67797 * 20 19 18
22 22 C 1.38282 * 120.14754 * 0.64637 * 21 20 19
23 23 C 1.38510 * 120.02362 * 359.64228 * 22 21 20
24 24 C 1.38502 * 119.98719 * 79.99696 * 19 18 17
25 25 O 1.36500 * 131.53725 * 0.02562 * 24 19 18
26 26 C 1.43987 * 105.48347 * 162.68226 * 25 24 19
27 27 O 1.36496 * 131.53621 * 180.02562 * 23 22 21
28 28 H 0.96995 * 120.00006 * 359.97438 * 1 2 3
29 29 H 1.08004 * 120.05739 * 0.02562 * 10 9 7
30 30 H 1.07999 * 119.71425 * 180.02562 * 11 10 9
31 31 H 1.07995 * 119.66504 * 179.74774 * 12 11 10
32 32 H 1.08002 * 119.95370 * 180.02562 * 13 12 11
33 33 H 0.97007 * 120.00067 * 359.97438 * 17 15 14
34 34 H 1.09008 * 109.47013 * 300.00212 * 18 17 15
35 35 H 1.09009 * 109.47077 * 59.99456 * 18 17 15
36 36 H 1.07995 * 119.93185 * 0.02562 * 20 19 18
37 37 H 1.08002 * 119.92745 * 180.29271 * 21 20 19
38 38 H 1.07994 * 119.98893 * 179.65799 * 22 21 20
39 39 H 1.08999 * 110.57024 * 268.56096 * 26 25 24
40 40 H 1.09008 * 110.69951 * 145.75533 * 26 25 24
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3063 0.0000 0.0000
3 14 2.2403 1.6176 0.0000
4 1 3.0940 1.6964 -1.2125
5 1 1.2753 2.7464 0.0006
6 1 3.0941 1.6963 1.2125
7 6 2.0077 -1.2148 -0.0005
8 1 3.0784 -1.2203 0.1406
9 6 1.3153 -2.4279 -0.1854
10 6 0.1801 -2.4788 -1.0152
11 6 -0.4893 -3.6683 -1.1887
12 6 -0.0546 -4.8227 -0.5519
13 6 1.0577 -4.7993 0.2684
14 6 1.7555 -3.6106 0.4645
15 6 2.9428 -3.5810 1.3381
16 8 3.4886 -2.5231 1.5865
17 7 3.4231 -4.7263 1.8614
18 6 4.6025 -4.6969 2.7299
19 6 4.9309 -6.0974 3.1790
20 6 4.5512 -6.5265 4.4375
21 6 4.8449 -7.8124 4.8502
22 6 5.5314 -8.6712 4.0114
23 6 5.9200 -8.2462 2.7517
24 6 5.6178 -6.9524 2.3331
25 8 6.1024 -6.7786 1.0689
26 6 7.0583 -7.8378 0.8748
27 8 6.5937 -8.8827 1.7496
28 1 -0.4850 0.8400 0.0004
29 1 -0.1651 -1.5858 -1.5150
30 1 -1.3601 -3.7043 -1.8266
31 1 -0.5935 -5.7475 -0.6953
32 1 1.3860 -5.7044 0.7578
33 1 2.9874 -5.5702 1.6636
34 1 5.4482 -4.2834 2.1803
35 1 4.3966 -4.0751 3.6013
36 1 4.0192 -5.8572 5.0973
37 1 4.5426 -8.1455 5.8321
38 1 5.7643 -9.6737 4.3386
39 1 8.0566 -7.5107 1.1653
40 1 7.0538 -8.1757 -0.1616
RHF calculation, no. of doubly occupied orbitals= 59
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001361895264.mol2 40
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 14:56:33
Heat of formation + Delta-G solvation = -46.500848 kcal
Electronic energy + Delta-G solvation = -26430.142744 eV
Core-core repulsion = 22561.770318 eV
Total energy + Delta-G solvation = -3868.372426 eV
No. of doubly occupied orbitals = 59
Molecular weight
(most abundant/longest-lived isotopes) = 325.115 amu
Computer time = 0.77 seconds
Orbital eigenvalues (eV)
-42.33898 -39.03581 -38.12546 -36.76401 -36.42445 -34.27496 -33.57626 -31.24198
-30.13716 -29.87818 -29.34729 -26.24070 -25.97253 -25.12078 -23.09514 -22.35516
-21.58495 -20.73551 -19.39233 -18.22823 -17.88168 -17.59111 -17.22950 -16.53319
-16.08154 -15.32688 -15.09299 -14.83363 -14.44436 -14.42469 -14.21429 -13.80978
-13.67616 -13.34399 -13.10662 -12.99329 -12.89349 -12.66851 -12.45518 -12.08478
-11.97872 -11.49920 -11.19349 -11.12859 -11.08230 -10.92778 -10.66641 -10.50270
-10.06474 -9.65914 -9.23815 -9.06221 -8.38576 -8.32422 -8.22208 -7.54839
-7.32612 -6.76476 -4.35699 0.93469 0.96661 2.40132 2.59242 2.85698
3.11130 3.17401 3.27339 3.28121 3.31800 4.00143 4.14814 4.19502
4.25859 4.47253 4.64636 4.71921 4.78511 4.88879 4.96290 5.05158
5.25333 5.58537 5.69082 5.70767 5.90004 5.93912 6.03429 6.11576
6.21711 6.23657 6.31509 6.33729 6.65080 6.93904 6.99547 7.10143
7.18497 7.26225 7.50121 7.66643 7.92796 8.01842 8.21547 8.41267
8.69756 8.85897 8.93338 9.43858 10.18300
Molecular weight = 325.11amu
Principal moments of inertia in cm(-1)
A = 0.016190 B = 0.003229 C = 0.003023
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1729.069423 B = 8668.895413 C = 9261.473071
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.794 5.794
2 C 0.069 3.931
3 Si 0.917 3.083
4 H -0.263 1.263
5 H -0.280 1.280
6 H -0.262 1.262
7 C -0.416 4.416
8 H 0.105 0.895
9 C 0.146 3.854
10 C -0.149 4.149
11 C -0.096 4.096
12 C -0.246 4.246
13 C -0.056 4.056
14 C -0.261 4.261
15 C 0.566 3.434
16 O -0.538 6.538
17 N -0.743 5.743
18 C 0.169 3.831
19 C -0.080 4.080
20 C -0.093 4.093
21 C -0.113 4.113
22 C -0.099 4.099
23 C 0.026 3.974
24 C 0.050 3.950
25 O -0.297 6.297
26 C 0.211 3.789
27 O -0.311 6.311
28 H 0.282 0.718
29 H 0.119 0.881
30 H 0.091 0.909
31 H 0.090 0.910
32 H 0.088 0.912
33 H 0.392 0.608
34 H 0.071 0.929
35 H 0.074 0.926
36 H 0.141 0.859
37 H 0.139 0.861
38 H 0.134 0.866
39 H 0.083 0.917
40 H 0.132 0.868
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 9.767 -13.866 6.305 18.095
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.419 5.419
2 C -0.149 4.149
3 Si 0.742 3.258
4 H -0.188 1.188
5 H -0.205 1.205
6 H -0.186 1.186
7 C -0.445 4.445
8 H 0.123 0.877
9 C 0.142 3.858
10 C -0.168 4.168
11 C -0.114 4.114
12 C -0.266 4.266
13 C -0.075 4.075
14 C -0.266 4.266
15 C 0.360 3.640
16 O -0.417 6.417
17 N -0.398 5.398
18 C 0.045 3.955
19 C -0.082 4.082
20 C -0.111 4.111
21 C -0.131 4.131
22 C -0.118 4.118
23 C -0.018 4.018
24 C 0.005 3.995
25 O -0.213 6.213
26 C 0.100 3.900
27 O -0.227 6.227
28 H 0.093 0.907
29 H 0.137 0.863
30 H 0.109 0.891
31 H 0.108 0.892
32 H 0.106 0.894
33 H 0.227 0.773
34 H 0.089 0.911
35 H 0.092 0.908
36 H 0.159 0.841
37 H 0.157 0.843
38 H 0.152 0.848
39 H 0.101 0.899
40 H 0.149 0.851
Dipole moment (debyes) X Y Z Total
from point charges 9.982 -12.963 6.264 17.519
hybrid contribution 0.173 0.087 -0.221 0.293
sum 10.155 -12.876 6.044 17.477
Atomic orbital electron populations
1.69713 1.07751 1.29620 1.34834 1.26126 0.94793 1.01775 0.92189
0.86204 0.79957 0.79369 0.80297 1.18784 1.20487 1.18611 1.20175
0.97335 0.89443 1.37505 0.87690 1.17471 0.90106 0.91273 0.86974
1.21381 0.98346 0.96389 1.00675 1.20797 0.98215 0.93561 0.98876
1.20275 1.01442 0.97344 1.07505 1.20646 0.95066 0.95110 0.96680
1.19435 1.02015 0.96138 1.09022 1.18431 0.83976 0.82304 0.79249
1.90671 1.60435 1.29598 1.60984 1.46039 1.30912 1.10406 1.52413
1.19913 0.89867 0.90710 0.95006 1.19143 1.00535 0.95675 0.92804
1.20980 0.99156 0.96363 0.94640 1.20920 0.98878 0.93327 0.99950
1.20091 1.01005 1.01302 0.89433 1.19818 1.00258 0.90507 0.91267
1.19663 1.00752 0.94053 0.85004 1.87488 1.55870 1.50428 1.27489
1.25650 0.92169 0.75487 0.96731 1.87352 1.69611 1.31458 1.34288
0.90697 0.86313 0.89119 0.89167 0.89376 0.77317 0.91088 0.90783
0.84106 0.84320 0.84823 0.89939 0.85089
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 17.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.79 -20.76 11.05 55.56 0.61 -20.15 16
2 C 0.07 1.80 5.27 -17.30 -0.09 1.71 16
3 Si 0.92 19.84 29.57 -169.99 -5.03 14.82 16
4 H -0.26 -5.58 7.11 56.52 0.40 -5.17 16
5 H -0.28 -5.76 7.11 56.52 0.40 -5.36 16
6 H -0.26 -5.79 7.11 56.52 0.40 -5.39 16
7 C -0.42 -11.60 7.71 -37.81 -0.29 -11.89 16
8 H 0.11 3.03 5.86 -52.49 -0.31 2.72 16
9 C 0.15 3.98 5.52 -106.54 -0.59 3.39 16
10 C -0.15 -3.84 8.62 -38.88 -0.34 -4.17 16
11 C -0.10 -2.20 10.01 -39.60 -0.40 -2.59 16
12 C -0.25 -5.37 10.03 -39.37 -0.39 -5.77 16
13 C -0.06 -1.24 9.52 -39.22 -0.37 -1.61 16
14 C -0.26 -6.53 5.92 -104.37 -0.62 -7.15 16
15 C 0.57 13.43 7.72 -12.52 -0.10 13.33 16
16 O -0.54 -14.37 13.57 5.27 0.07 -14.30 16
17 N -0.74 -13.87 5.50 -62.56 -0.34 -14.21 16
18 C 0.17 2.69 5.80 -5.20 -0.03 2.66 16
19 C -0.08 -1.05 5.26 -104.51 -0.55 -1.60 16
20 C -0.09 -0.97 9.66 -39.57 -0.38 -1.35 16
21 C -0.11 -0.99 10.04 -39.57 -0.40 -1.38 16
22 C -0.10 -0.96 10.06 -39.46 -0.40 -1.36 16
23 C 0.03 0.31 7.15 -39.08 -0.28 0.03 16
24 C 0.05 0.68 6.85 -39.09 -0.27 0.41 16
25 O -0.30 -4.13 11.39 -45.69 -0.52 -4.65 16
26 C 0.21 2.06 8.89 101.05 0.90 2.96 16
27 O -0.31 -3.64 11.40 -45.68 -0.52 -4.16 16
28 H 0.28 6.72 8.29 -40.82 -0.34 6.38 16
29 H 0.12 3.12 6.51 -52.48 -0.34 2.78 16
30 H 0.09 1.83 8.06 -52.49 -0.42 1.41 16
31 H 0.09 1.71 8.06 -52.49 -0.42 1.29 16
32 H 0.09 1.65 6.43 -52.49 -0.34 1.31 16
33 H 0.39 6.71 6.53 -40.82 -0.27 6.44 16
34 H 0.07 1.22 8.14 -51.92 -0.42 0.79 16
35 H 0.07 1.15 8.00 -51.92 -0.42 0.73 16
36 H 0.14 1.25 8.03 -52.49 -0.42 0.83 16
37 H 0.14 0.80 8.06 -52.49 -0.42 0.38 16
38 H 0.13 0.99 8.06 -52.49 -0.42 0.57 16
39 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16
40 H 0.13 0.92 8.14 -51.92 -0.42 0.50 16
LS Contribution 344.16 15.07 5.19 5.19
Total: -1.00 -32.12 344.16 -9.31 -41.43
By element:
Atomic # 1 Polarization: 14.59 SS G_CDS: -4.18 Total: 10.41 kcal
Atomic # 6 Polarization: -9.79 SS G_CDS: -4.59 Total: -14.38 kcal
Atomic # 7 Polarization: -34.63 SS G_CDS: 0.27 Total: -34.36 kcal
Atomic # 8 Polarization: -22.14 SS G_CDS: -0.97 Total: -23.11 kcal
Atomic # 14 Polarization: 19.84 SS G_CDS: -5.03 Total: 14.82 kcal
Total LS contribution 5.19 Total: 5.19 kcal
Total: -32.12 -9.31 -41.43 kcal
The number of atoms in the molecule is 40
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001361895264.mol2 40
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -5.066 kcal
(2) G-P(sol) polarization free energy of solvation -32.120 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.186 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.315 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.435 kcal
(6) G-S(sol) free energy of system = (1) + (5) -46.501 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.77 seconds