Wall clock time and date at job start Tue Mar 31 2020 14:12:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46500 * 109.47366 * 2 1 4 4 C 1.38514 * 120.00544 * 179.97438 * 3 2 1 5 5 N 1.32587 * 119.54911 * 0.02562 * 4 3 2 6 6 C 1.31628 * 121.78810 * 180.02562 * 5 4 3 7 7 C 1.39564 * 120.66497 * 359.97438 * 6 5 4 8 8 C 1.47548 * 120.47164 * 179.97438 * 7 6 5 9 9 O 1.21597 * 119.99877 * 353.26150 * 8 7 6 10 10 N 1.34775 * 119.99876 * 173.25567 * 8 7 6 11 11 C 1.47582 * 134.49005 * 174.49118 * 10 8 7 12 12 C 1.53950 * 86.11459 * 155.35948 * 11 10 8 13 13 O 1.42903 * 113.73978 * 269.15366 * 12 11 10 14 14 C 1.50703 * 113.74048 * 137.95356 * 12 11 10 15 15 H 1.07999 * 119.99752 * 1.92112 * 14 12 11 16 16 C 1.37871 * 119.99846 * 181.92585 * 14 12 11 17 17 N 1.31519 * 120.00294 * 359.97438 * 16 14 12 18 18 Si 1.86795 * 120.00049 * 179.97438 * 16 14 12 19 19 H 1.48506 * 109.47451 * 179.97438 * 18 16 14 20 20 H 1.48497 * 109.47264 * 299.99899 * 18 16 14 21 21 H 1.48509 * 109.47287 * 59.99970 * 18 16 14 22 22 C 1.47810 * 134.45535 * 354.35804 * 10 8 7 23 23 C 1.40341 * 119.05218 * 0.25631 * 7 6 5 24 24 C 1.37953 * 118.36589 * 359.49804 * 23 7 6 25 25 Cl 1.73599 * 120.38512 * 180.21731 * 24 23 7 26 26 H 1.09001 * 109.47092 * 180.02562 * 1 2 3 27 27 H 1.08991 * 109.47502 * 300.00286 * 1 2 3 28 28 H 1.09006 * 109.47153 * 60.00374 * 1 2 3 29 29 H 1.09005 * 109.47347 * 239.99886 * 2 1 3 30 30 H 1.09001 * 109.46931 * 120.00040 * 2 1 3 31 31 H 0.97008 * 119.99477 * 359.97438 * 3 2 1 32 32 H 1.07995 * 119.66452 * 180.02562 * 6 5 4 33 33 H 1.08991 * 113.77056 * 41.05850 * 11 10 8 34 34 H 1.09002 * 113.86879 * 269.67076 * 11 10 8 35 35 H 0.96703 * 113.99385 * 178.08021 * 13 12 11 36 36 H 0.96997 * 120.00006 * 180.02562 * 17 16 14 37 37 H 1.08998 * 113.76790 * 90.38334 * 22 10 8 38 38 H 1.08994 * 113.84207 * 318.91390 * 22 10 8 39 39 H 1.08000 * 120.81636 * 179.74798 * 23 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 3.3802 1.6344 0.0005 5 7 4.2339 0.6199 0.0005 6 6 5.5364 0.8098 0.0015 7 6 6.0676 2.1003 0.0021 8 6 7.5283 2.3082 0.0038 9 8 8.2774 1.3585 0.1283 10 7 8.0323 3.5507 -0.1327 11 6 9.3890 4.1287 -0.0745 12 6 8.8324 5.2581 -0.9603 13 8 8.9752 5.0139 -2.3611 14 6 9.2964 6.6330 -0.5533 15 1 9.9831 6.7487 0.2721 16 6 8.8440 7.7429 -1.2347 17 7 8.0080 7.6019 -2.2401 18 14 9.4184 9.4471 -0.7298 19 1 8.7921 10.4628 -1.6138 20 1 9.0242 9.7054 0.6785 21 1 10.8962 9.5281 -0.8529 22 6 7.4477 4.8810 -0.4034 23 6 5.1925 3.1975 0.0071 24 6 3.8348 2.9530 0.0006 25 17 2.7052 4.2712 0.0006 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8899 28 1 -0.3634 0.5138 -0.8901 29 1 1.8934 -0.5139 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 1.3879 2.1185 -0.0004 32 1 6.2006 -0.0418 0.0011 33 1 10.1477 3.5190 -0.5650 34 1 9.6860 4.4574 0.9215 35 1 8.6005 5.7074 -2.9213 36 1 7.6901 8.3827 -2.7197 37 1 7.1715 5.4308 0.4963 38 1 6.6594 4.8709 -1.1561 39 1 5.5726 4.2084 0.0117 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001548688464.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:12:13 Heat of formation + Delta-G solvation = -10.805661 kcal Electronic energy + Delta-G solvation = -25035.633355 eV Core-core repulsion = 21198.668689 eV Total energy + Delta-G solvation = -3836.964665 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 325.098 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.61508 -39.30888 -37.40954 -36.61366 -36.31549 -34.04492 -32.49784 -32.23707 -31.81635 -29.26527 -28.16312 -25.65935 -25.46271 -24.16097 -23.37138 -22.09688 -20.30918 -18.91949 -18.01300 -17.54752 -17.06663 -16.57700 -15.61589 -15.53576 -15.22489 -14.92567 -14.85877 -14.72892 -14.20394 -14.06215 -13.81410 -13.20951 -13.01793 -12.56682 -12.50587 -12.26101 -12.20405 -12.10933 -12.05802 -11.82601 -11.59313 -11.21057 -11.12452 -11.04506 -10.56546 -10.34425 -10.30120 -10.02498 -9.61667 -9.53840 -9.23553 -8.79039 -8.43430 -8.00241 -7.74735 -6.41388 -4.52000 0.86826 1.11024 2.00939 2.88015 3.15139 3.17508 3.21440 3.23537 3.46941 3.98828 4.17145 4.33842 4.66850 4.72636 4.80980 4.82884 4.87847 4.95029 5.07122 5.28842 5.50182 5.57150 5.63637 5.64157 5.72567 5.89939 6.00732 6.11433 6.25291 6.33054 6.40931 6.55767 6.63469 6.85085 7.02513 7.05721 7.60575 7.78816 7.92423 8.40059 8.51182 8.69408 9.19257 9.39955 10.65211 Molecular weight = 325.10amu Principal moments of inertia in cm(-1) A = 0.016731 B = 0.003506 C = 0.003016 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1673.131600 B = 7985.371224 C = 9281.866639 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.125 3.875 3 N -0.715 5.715 4 C 0.428 3.572 5 N -0.533 5.533 6 C 0.212 3.788 7 C -0.224 4.224 8 C 0.583 3.417 9 O -0.562 6.562 10 N -0.627 5.627 11 C 0.114 3.886 12 C 0.241 3.759 13 O -0.571 6.571 14 C -0.538 4.538 15 H 0.072 0.928 16 C 0.073 3.927 17 N -0.897 5.897 18 Si 0.907 3.093 19 H -0.285 1.285 20 H -0.274 1.274 21 H -0.273 1.273 22 C 0.068 3.932 23 C 0.001 3.999 24 C -0.165 4.165 25 Cl -0.060 7.060 26 H 0.075 0.925 27 H 0.060 0.940 28 H 0.061 0.939 29 H 0.068 0.932 30 H 0.067 0.933 31 H 0.410 0.590 32 H 0.175 0.825 33 H 0.073 0.927 34 H 0.088 0.912 35 H 0.392 0.608 36 H 0.274 0.726 37 H 0.086 0.914 38 H 0.074 0.926 39 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.328 -8.220 4.169 17.036 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.001 3.999 3 N -0.349 5.349 4 C 0.190 3.810 5 N -0.251 5.251 6 C 0.052 3.948 7 C -0.232 4.232 8 C 0.373 3.627 9 O -0.443 6.443 10 N -0.359 5.359 11 C -0.007 4.007 12 C 0.199 3.801 13 O -0.383 6.383 14 C -0.577 4.577 15 H 0.090 0.910 16 C -0.130 4.130 17 N -0.537 5.537 18 Si 0.734 3.266 19 H -0.210 1.210 20 H -0.199 1.199 21 H -0.199 1.199 22 C -0.055 4.055 23 C -0.025 4.025 24 C -0.199 4.199 25 Cl -0.032 7.032 26 H 0.094 0.906 27 H 0.080 0.920 28 H 0.080 0.920 29 H 0.086 0.914 30 H 0.086 0.914 31 H 0.248 0.752 32 H 0.192 0.808 33 H 0.091 0.909 34 H 0.106 0.894 35 H 0.246 0.754 36 H 0.084 0.916 37 H 0.104 0.896 38 H 0.092 0.908 39 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -14.362 -10.256 4.311 18.167 hybrid contribution -0.264 2.784 0.037 2.796 sum -14.626 -7.472 4.348 16.990 Atomic orbital electron populations 1.22028 0.94726 1.03213 1.02521 1.21282 0.93693 0.82324 1.02578 1.44653 1.02169 1.09025 1.79018 1.18190 0.86412 0.87305 0.89067 1.67480 1.03595 1.31573 1.22474 1.22760 0.89401 0.96116 0.86517 1.20708 0.94642 0.94240 1.13597 1.17402 0.86458 0.82067 0.76790 1.90719 1.60206 1.40335 1.53049 1.50065 1.11967 1.05733 1.68180 1.23472 0.84746 0.92793 0.99740 1.19825 0.88292 0.91312 0.80622 1.86077 1.83373 1.51933 1.16874 1.21454 1.29002 0.89997 1.17204 0.91030 1.25063 0.93629 1.00028 0.94258 1.69388 1.31765 1.31625 1.20890 0.86400 0.79252 0.82303 0.78638 1.21027 1.19893 1.19852 1.24511 1.02257 0.78900 0.99797 1.22184 0.90181 1.01520 0.88593 1.21074 0.91849 0.87929 1.19008 1.98348 1.60576 1.46734 1.97504 0.90629 0.92044 0.91997 0.91401 0.91432 0.75164 0.80767 0.90859 0.89386 0.75351 0.91593 0.89637 0.90814 0.81928 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.97 10.03 37.16 0.37 -0.59 16 2 C 0.12 1.07 6.39 -4.04 -0.03 1.04 16 3 N -0.72 -7.54 5.64 -60.41 -0.34 -7.88 16 4 C 0.43 5.83 7.47 -155.20 -1.16 4.67 16 5 N -0.53 -7.73 9.52 -12.12 -0.12 -7.85 16 6 C 0.21 3.27 10.76 -17.14 -0.18 3.09 16 7 C -0.22 -3.85 5.89 -104.82 -0.62 -4.47 16 8 C 0.58 11.89 7.98 -12.46 -0.10 11.79 16 9 O -0.56 -12.67 17.11 5.28 0.09 -12.58 16 10 N -0.63 -13.01 3.60 -179.34 -0.65 -13.65 16 11 C 0.11 2.42 8.23 -2.96 -0.02 2.40 16 12 C 0.24 5.60 1.40 -90.84 -0.13 5.47 16 13 O -0.57 -14.36 13.49 -35.23 -0.48 -14.83 16 14 C -0.54 -13.07 8.61 -34.44 -0.30 -13.36 16 15 H 0.07 1.69 7.81 -52.49 -0.41 1.28 16 16 C 0.07 1.77 5.39 -17.82 -0.10 1.67 16 17 N -0.90 -22.09 11.20 55.43 0.62 -21.47 16 18 Si 0.91 19.05 29.54 -169.99 -5.02 14.03 16 19 H -0.28 -5.99 7.11 56.52 0.40 -5.58 16 20 H -0.27 -5.69 7.11 56.52 0.40 -5.29 16 21 H -0.27 -5.79 7.11 56.52 0.40 -5.39 16 22 C 0.07 1.40 5.62 -2.84 -0.02 1.38 16 23 C 0.00 0.02 8.95 -38.90 -0.35 -0.33 16 24 C -0.16 -2.35 6.35 -39.22 -0.25 -2.60 16 25 Cl -0.06 -0.75 27.59 -51.86 -1.43 -2.18 16 26 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 27 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 28 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16 29 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.41 3.78 7.10 -40.82 -0.29 3.49 16 32 H 0.18 2.50 7.66 -52.49 -0.40 2.10 16 33 H 0.07 1.58 8.14 -51.93 -0.42 1.16 16 34 H 0.09 1.69 8.09 -51.93 -0.42 1.27 16 35 H 0.39 9.93 6.60 45.56 0.30 10.23 16 36 H 0.27 6.47 8.31 -40.82 -0.34 6.13 16 37 H 0.09 1.67 8.00 -51.93 -0.42 1.25 16 38 H 0.07 1.53 6.90 -51.93 -0.36 1.17 16 39 H 0.16 2.67 4.24 -52.49 -0.22 2.45 16 LS Contribution 345.66 15.07 5.21 5.21 Total: -1.00 -27.76 345.66 -8.87 -36.63 By element: Atomic # 1 Polarization: 18.30 SS G_CDS: -3.89 Total: 14.42 kcal Atomic # 6 Polarization: 13.03 SS G_CDS: -2.87 Total: 10.16 kcal Atomic # 7 Polarization: -50.37 SS G_CDS: -0.48 Total: -50.85 kcal Atomic # 8 Polarization: -27.03 SS G_CDS: -0.38 Total: -27.41 kcal Atomic # 14 Polarization: 19.05 SS G_CDS: -5.02 Total: 14.03 kcal Atomic # 17 Polarization: -0.75 SS G_CDS: -1.43 Total: -2.18 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -27.76 -8.87 -36.63 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001548688464.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.823 kcal (2) G-P(sol) polarization free energy of solvation -27.759 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.936 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.870 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.629 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.806 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds