Wall clock time and date at job start Tue Mar 31 2020 14:12:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46500 * 109.47366 * 2 1 4 4 C 1.38514 * 120.00544 * 179.97438 * 3 2 1 5 5 N 1.32587 * 119.54911 * 0.02562 * 4 3 2 6 6 C 1.31628 * 121.78810 * 180.02562 * 5 4 3 7 7 C 1.39564 * 120.66497 * 359.97438 * 6 5 4 8 8 C 1.47548 * 120.47164 * 179.97438 * 7 6 5 9 9 O 1.21597 * 119.99877 * 353.26150 * 8 7 6 10 10 N 1.34775 * 119.99876 * 173.25567 * 8 7 6 11 11 C 1.47582 * 134.49005 * 174.49118 * 10 8 7 12 12 C 1.53950 * 86.11459 * 155.35948 * 11 10 8 13 13 O 1.42903 * 113.73978 * 269.15366 * 12 11 10 14 14 C 1.50703 * 113.74048 * 137.95356 * 12 11 10 15 15 H 1.07999 * 119.99752 * 1.92112 * 14 12 11 16 16 C 1.37871 * 119.99846 * 181.92585 * 14 12 11 17 17 N 1.31519 * 120.00294 * 359.97438 * 16 14 12 18 18 Si 1.86795 * 120.00049 * 179.97438 * 16 14 12 19 19 H 1.48506 * 109.47451 * 179.97438 * 18 16 14 20 20 H 1.48497 * 109.47264 * 299.99899 * 18 16 14 21 21 H 1.48509 * 109.47287 * 59.99970 * 18 16 14 22 22 C 1.47810 * 134.45535 * 354.35804 * 10 8 7 23 23 C 1.40341 * 119.05218 * 0.25631 * 7 6 5 24 24 C 1.37953 * 118.36589 * 359.49804 * 23 7 6 25 25 Cl 1.73599 * 120.38512 * 180.21731 * 24 23 7 26 26 H 1.09001 * 109.47092 * 180.02562 * 1 2 3 27 27 H 1.08991 * 109.47502 * 300.00286 * 1 2 3 28 28 H 1.09006 * 109.47153 * 60.00374 * 1 2 3 29 29 H 1.09005 * 109.47347 * 239.99886 * 2 1 3 30 30 H 1.09001 * 109.46931 * 120.00040 * 2 1 3 31 31 H 0.97008 * 119.99477 * 359.97438 * 3 2 1 32 32 H 1.07995 * 119.66452 * 180.02562 * 6 5 4 33 33 H 1.08991 * 113.77056 * 41.05850 * 11 10 8 34 34 H 1.09002 * 113.86879 * 269.67076 * 11 10 8 35 35 H 0.96703 * 113.99385 * 178.08021 * 13 12 11 36 36 H 0.96997 * 120.00006 * 180.02562 * 17 16 14 37 37 H 1.08998 * 113.76790 * 90.38334 * 22 10 8 38 38 H 1.08994 * 113.84207 * 318.91390 * 22 10 8 39 39 H 1.08000 * 120.81636 * 179.74798 * 23 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 3.3802 1.6344 0.0005 5 7 4.2339 0.6199 0.0005 6 6 5.5364 0.8098 0.0015 7 6 6.0676 2.1003 0.0021 8 6 7.5283 2.3082 0.0038 9 8 8.2774 1.3585 0.1283 10 7 8.0323 3.5507 -0.1327 11 6 9.3890 4.1287 -0.0745 12 6 8.8324 5.2581 -0.9603 13 8 8.9752 5.0139 -2.3611 14 6 9.2964 6.6330 -0.5533 15 1 9.9831 6.7487 0.2721 16 6 8.8440 7.7429 -1.2347 17 7 8.0080 7.6019 -2.2401 18 14 9.4184 9.4471 -0.7298 19 1 8.7921 10.4628 -1.6138 20 1 9.0242 9.7054 0.6785 21 1 10.8962 9.5281 -0.8529 22 6 7.4477 4.8810 -0.4034 23 6 5.1925 3.1975 0.0071 24 6 3.8348 2.9530 0.0006 25 17 2.7052 4.2712 0.0006 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8899 28 1 -0.3634 0.5138 -0.8901 29 1 1.8934 -0.5139 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 1.3879 2.1185 -0.0004 32 1 6.2006 -0.0418 0.0011 33 1 10.1477 3.5190 -0.5650 34 1 9.6860 4.4574 0.9215 35 1 8.6005 5.7074 -2.9213 36 1 7.6901 8.3827 -2.7197 37 1 7.1715 5.4308 0.4963 38 1 6.6594 4.8709 -1.1561 39 1 5.5726 4.2084 0.0117 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001548688464.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:12:13 Heat of formation + Delta-G solvation = -29.312525 kcal Electronic energy + Delta-G solvation = -25036.435872 eV Core-core repulsion = 21198.668689 eV Total energy + Delta-G solvation = -3837.767183 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 325.098 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.90198 -40.82494 -39.01269 -37.70632 -37.31369 -35.85725 -34.13191 -33.70739 -32.74047 -30.62180 -29.50485 -27.28777 -27.19115 -25.15979 -24.65629 -22.98544 -21.94587 -20.49461 -19.33171 -19.08520 -18.39146 -18.02225 -17.17698 -16.86414 -16.57321 -16.21394 -16.17812 -15.95054 -15.71639 -15.22534 -15.01344 -14.75188 -14.54685 -14.17502 -13.75949 -13.68398 -13.39589 -13.17778 -13.13069 -12.84354 -12.76149 -12.72516 -12.63197 -12.25627 -12.23424 -12.19817 -11.54770 -11.34595 -11.12581 -10.79072 -10.74595 -10.61032 -10.18965 -9.62042 -8.89119 -8.24218 -6.40987 -0.35624 -0.08812 0.90008 1.49656 1.52148 1.58702 1.76284 1.85292 1.96746 2.42485 2.66938 2.98105 3.21483 3.37083 3.63250 3.72200 3.80343 4.04976 4.12023 4.16162 4.25027 4.40905 4.50209 4.56106 4.61802 4.73661 4.78181 4.86393 4.87988 4.97441 5.06295 5.16052 5.24158 5.25583 5.74631 5.85957 5.94556 6.07311 6.64483 6.76454 6.86385 7.08831 7.32280 7.45789 8.81396 Molecular weight = 325.10amu Principal moments of inertia in cm(-1) A = 0.016731 B = 0.003506 C = 0.003016 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1673.131600 B = 7985.371224 C = 9281.866639 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.120 3.880 3 N -0.700 5.700 4 C 0.432 3.568 5 N -0.535 5.535 6 C 0.221 3.779 7 C -0.246 4.246 8 C 0.580 3.420 9 O -0.590 6.590 10 N -0.631 5.631 11 C 0.114 3.886 12 C 0.221 3.779 13 O -0.586 6.586 14 C -0.555 4.555 15 H 0.074 0.926 16 C 0.035 3.965 17 N -0.914 5.914 18 Si 0.966 3.034 19 H -0.284 1.284 20 H -0.267 1.267 21 H -0.276 1.276 22 C 0.086 3.914 23 C 0.000 4.000 24 C -0.168 4.168 25 Cl -0.042 7.042 26 H 0.091 0.909 27 H 0.067 0.933 28 H 0.065 0.935 29 H 0.063 0.937 30 H 0.065 0.935 31 H 0.418 0.582 32 H 0.182 0.818 33 H 0.062 0.938 34 H 0.108 0.892 35 H 0.387 0.613 36 H 0.275 0.725 37 H 0.098 0.902 38 H 0.070 0.930 39 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.339 -8.088 4.888 18.876 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.003 4.003 3 N -0.333 5.333 4 C 0.192 3.808 5 N -0.254 5.254 6 C 0.061 3.939 7 C -0.255 4.255 8 C 0.372 3.628 9 O -0.474 6.474 10 N -0.363 5.363 11 C -0.008 4.008 12 C 0.179 3.821 13 O -0.397 6.397 14 C -0.593 4.593 15 H 0.092 0.908 16 C -0.166 4.166 17 N -0.554 5.554 18 Si 0.791 3.209 19 H -0.210 1.210 20 H -0.192 1.192 21 H -0.201 1.201 22 C -0.036 4.036 23 C -0.026 4.026 24 C -0.202 4.202 25 Cl -0.014 7.014 26 H 0.109 0.891 27 H 0.086 0.914 28 H 0.084 0.916 29 H 0.082 0.918 30 H 0.084 0.916 31 H 0.258 0.742 32 H 0.199 0.801 33 H 0.081 0.919 34 H 0.126 0.874 35 H 0.241 0.759 36 H 0.085 0.915 37 H 0.116 0.884 38 H 0.088 0.912 39 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -16.429 -10.127 5.038 19.946 hybrid contribution 0.233 2.688 -0.204 2.706 sum -16.196 -7.439 4.834 18.467 Atomic orbital electron populations 1.21995 0.92259 1.04440 1.03024 1.21475 0.95696 0.80877 1.02257 1.44877 1.01057 1.10467 1.76863 1.18399 0.87527 0.86973 0.87929 1.67560 1.03134 1.31658 1.23030 1.22841 0.89923 0.95644 0.85536 1.20443 0.92780 0.95440 1.16841 1.17853 0.87737 0.81334 0.75852 1.90687 1.61308 1.40943 1.54479 1.50059 1.11631 1.06054 1.68509 1.23491 0.84936 0.92080 1.00250 1.20116 0.90295 0.91794 0.79855 1.86064 1.83642 1.51905 1.18101 1.21678 1.29371 0.90710 1.17547 0.90820 1.25708 0.93683 1.02942 0.94265 1.69458 1.32254 1.32343 1.21380 0.85487 0.78410 0.78537 0.78463 1.20978 1.19217 1.20137 1.24292 1.00689 0.78744 0.99906 1.22063 0.90903 1.00791 0.88832 1.21066 0.91577 0.88847 1.18753 1.98353 1.59668 1.45951 1.97409 0.89072 0.91435 0.91566 0.91825 0.91626 0.74236 0.80097 0.91937 0.87443 0.75867 0.91505 0.88446 0.91155 0.82644 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.37 10.03 71.98 0.72 -0.65 16 2 C 0.12 1.77 6.39 86.38 0.55 2.32 16 3 N -0.70 -13.15 5.64 -345.05 -1.95 -15.10 16 4 C 0.43 11.03 7.47 133.26 1.00 12.03 16 5 N -0.54 -14.83 9.52 -192.25 -1.83 -16.67 16 6 C 0.22 6.72 10.76 85.04 0.91 7.63 16 7 C -0.25 -8.48 5.89 -19.99 -0.12 -8.60 16 8 C 0.58 23.95 7.98 86.70 0.69 24.64 16 9 O -0.59 -27.07 17.11 -4.02 -0.07 -27.14 16 10 N -0.63 -26.38 3.60 -843.40 -3.04 -29.42 16 11 C 0.11 4.89 8.23 86.49 0.71 5.61 16 12 C 0.22 10.32 1.40 -10.88 -0.02 10.31 16 13 O -0.59 -30.06 13.49 -148.98 -2.01 -32.07 16 14 C -0.56 -26.84 8.61 25.60 0.22 -26.62 16 15 H 0.07 3.44 7.81 -2.91 -0.02 3.42 16 16 C 0.04 1.68 5.39 84.65 0.46 2.13 16 17 N -0.91 -44.93 11.20 21.45 0.24 -44.69 16 18 Si 0.97 38.52 29.54 68.60 2.03 40.55 16 19 H -0.28 -11.24 7.11 99.48 0.71 -10.53 16 20 H -0.27 -10.33 7.11 99.48 0.71 -9.62 16 21 H -0.28 -11.06 7.11 99.48 0.71 -10.35 16 22 C 0.09 3.55 5.62 86.44 0.49 4.04 16 23 C 0.00 0.00 8.95 22.71 0.20 0.20 16 24 C -0.17 -4.59 6.35 22.50 0.14 -4.44 16 25 Cl -0.04 -0.98 27.59 -2.72 -0.08 -1.05 16 26 H 0.09 0.55 8.14 -2.39 -0.02 0.53 16 27 H 0.07 0.53 8.14 -2.39 -0.02 0.51 16 28 H 0.07 0.54 8.14 -2.38 -0.02 0.52 16 29 H 0.06 1.04 8.14 -2.38 -0.02 1.02 16 30 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 31 H 0.42 6.59 7.10 -92.70 -0.66 5.93 16 32 H 0.18 5.15 7.66 -2.91 -0.02 5.13 16 33 H 0.06 2.77 8.14 -2.39 -0.02 2.75 16 34 H 0.11 4.11 8.09 -2.39 -0.02 4.09 16 35 H 0.39 20.08 6.60 -74.06 -0.49 19.60 16 36 H 0.28 12.92 8.31 -92.71 -0.77 12.15 16 37 H 0.10 3.75 8.00 -2.39 -0.02 3.73 16 38 H 0.07 2.93 6.90 -2.39 -0.02 2.92 16 39 H 0.16 5.07 4.24 -2.91 -0.01 5.06 16 Total: -1.00 -58.39 345.66 -0.76 -59.15 By element: Atomic # 1 Polarization: 37.87 SS G_CDS: -0.03 Total: 37.85 kcal Atomic # 6 Polarization: 22.63 SS G_CDS: 5.96 Total: 28.59 kcal Atomic # 7 Polarization: -99.30 SS G_CDS: -6.57 Total: -105.88 kcal Atomic # 8 Polarization: -57.13 SS G_CDS: -2.08 Total: -59.21 kcal Atomic # 14 Polarization: 38.52 SS G_CDS: 2.03 Total: 40.55 kcal Atomic # 17 Polarization: -0.98 SS G_CDS: -0.08 Total: -1.05 kcal Total: -58.39 -0.76 -59.15 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001548688464.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.836 kcal (2) G-P(sol) polarization free energy of solvation -58.388 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.552 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.761 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.149 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.313 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds