Wall clock time and date at job start Tue Mar 31 2020 14:56:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30625 * 1 3 3 Si 1.86802 * 119.99927 * 2 1 4 4 H 1.48509 * 109.46965 * 87.22186 * 3 2 1 5 5 H 1.48499 * 109.47061 * 207.21814 * 3 2 1 6 6 H 1.48502 * 109.47123 * 327.22284 * 3 2 1 7 7 C 1.40267 * 120.00058 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00188 * 10.51043 * 7 2 1 9 9 C 1.40891 * 120.00197 * 190.50733 * 7 2 1 10 10 C 1.40711 * 120.32596 * 36.33258 * 9 7 2 11 11 C 1.37597 * 119.87929 * 180.02562 * 10 9 7 12 12 C 1.38824 * 120.57318 * 359.97438 * 11 10 9 13 13 C 1.38228 * 120.67423 * 0.02562 * 12 11 10 14 14 C 1.39222 * 120.09079 * 359.71805 * 13 12 11 15 15 C 1.47433 * 120.27950 * 180.27937 * 14 13 12 16 16 O 1.21617 * 119.99806 * 175.66724 * 15 14 13 17 17 N 1.34775 * 120.00159 * 355.67294 * 15 14 13 18 18 C 1.46504 * 120.00020 * 179.97438 * 17 15 14 19 19 C 1.50693 * 109.47206 * 179.97438 * 18 17 15 20 20 C 1.38396 * 119.92474 * 269.72823 * 19 18 17 21 21 C 1.38350 * 120.29903 * 179.72065 * 20 19 18 22 22 C 1.37960 * 120.15301 * 0.55646 * 21 20 19 23 23 C 1.39613 * 119.84818 * 359.71919 * 22 21 20 24 24 C 1.47721 * 120.15337 * 180.02562 * 23 22 21 25 25 O 1.21464 * 120.00235 * 179.97438 * 24 23 22 26 26 O 1.34713 * 119.99571 * 359.97438 * 24 23 22 27 27 C 1.37925 * 119.92605 * 90.00173 * 19 18 17 28 28 H 0.97003 * 120.00012 * 0.02562 * 1 2 3 29 29 H 1.07996 * 120.05741 * 359.97438 * 10 9 7 30 30 H 1.08000 * 119.71536 * 179.97438 * 11 10 9 31 31 H 1.08003 * 119.66168 * 179.97438 * 12 11 10 32 32 H 1.08001 * 119.95020 * 180.02562 * 13 12 11 33 33 H 0.97001 * 120.00277 * 0.02562 * 17 15 14 34 34 H 1.08992 * 109.47032 * 300.00420 * 18 17 15 35 35 H 1.09004 * 109.46511 * 59.99738 * 18 17 15 36 36 H 1.07995 * 119.84993 * 0.02562 * 20 19 18 37 37 H 1.07997 * 119.92261 * 180.25250 * 21 20 19 38 38 H 1.07998 * 120.07725 * 179.69989 * 22 21 20 39 39 H 0.96701 * 116.99984 * 180.02562 * 26 24 23 40 40 H 1.08001 * 120.07276 * 359.97438 * 27 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3063 0.0000 0.0000 3 14 2.2402 1.6178 0.0000 4 1 2.4290 2.0804 1.3985 5 1 3.5660 1.4239 -0.6404 6 1 1.4683 2.6350 -0.7580 7 6 2.0076 -1.2147 0.0005 8 1 1.4812 -2.1423 -0.1697 9 6 3.3988 -1.2249 0.2231 10 6 3.9796 -0.3209 1.1316 11 6 5.3394 -0.3386 1.3415 12 6 6.1467 -1.2423 0.6643 13 6 5.6008 -2.1406 -0.2334 14 6 4.2277 -2.1507 -0.4631 15 6 3.6403 -3.1111 -1.4150 16 8 2.4334 -3.1692 -1.5533 17 7 4.4407 -3.9247 -2.1317 18 6 3.8569 -4.8795 -3.0772 19 6 4.9579 -5.6623 -3.7450 20 6 5.5176 -5.1993 -4.9230 21 6 6.5327 -5.9087 -5.5396 22 6 6.9861 -7.0897 -4.9891 23 6 6.4221 -7.5655 -3.8039 24 6 6.9028 -8.8290 -3.2083 25 8 6.4105 -9.2402 -2.1769 26 8 7.8873 -9.5251 -3.8092 27 6 5.4017 -6.8414 -3.1838 28 1 -0.4850 0.8401 -0.0004 29 1 3.3593 0.3859 1.6626 30 1 5.7824 0.3567 2.0391 31 1 7.2124 -1.2430 0.8399 32 1 6.2398 -2.8388 -0.7535 33 1 5.4032 -3.8788 -2.0211 34 1 3.1973 -5.5630 -2.5427 35 1 3.2857 -4.3396 -3.8326 36 1 5.1636 -4.2774 -5.3603 37 1 6.9679 -5.5397 -6.4565 38 1 7.7753 -7.6450 -5.4740 39 1 8.1681 -10.3461 -3.3822 40 1 4.9613 -7.2037 -2.2666 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001594610952.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:56:40 Heat of formation + Delta-G solvation = -79.457866 kcal Electronic energy + Delta-G solvation = -25765.641789 eV Core-core repulsion = 21895.840239 eV Total energy + Delta-G solvation = -3869.801550 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.115 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.72577 -39.43770 -38.74069 -37.00352 -36.39038 -34.56648 -33.61381 -31.77650 -31.48289 -30.46802 -29.88796 -26.34556 -25.10078 -25.06251 -22.47616 -21.99291 -21.30955 -20.82491 -19.57706 -18.27089 -17.82048 -17.45276 -16.61380 -16.26516 -15.92565 -15.59631 -15.42833 -15.23447 -14.61983 -14.10946 -14.08573 -14.01164 -13.66933 -13.61373 -13.06388 -12.89294 -12.68093 -12.38923 -12.33905 -11.96964 -11.87691 -11.82762 -11.46969 -11.33461 -10.94814 -10.89268 -10.71083 -10.45417 -10.19845 -9.81718 -9.37318 -9.30047 -9.25852 -8.48356 -8.45283 -7.82880 -7.60025 -6.90978 -4.49472 0.37965 0.97394 2.09165 2.23917 2.59585 2.67096 3.07933 3.16499 3.27836 3.37967 3.93216 3.99527 4.06694 4.42018 4.54397 4.58949 4.66914 4.85626 4.99109 5.07081 5.37620 5.44227 5.54506 5.70797 5.76176 5.81794 5.93084 5.97409 6.03338 6.08831 6.13251 6.30605 6.37854 6.49964 6.50680 6.78498 7.01278 7.08785 7.21973 7.38448 7.56832 7.58093 7.74500 8.00624 8.27550 8.46945 8.62896 8.85698 9.32315 10.05671 Molecular weight = 325.11amu Principal moments of inertia in cm(-1) A = 0.019240 B = 0.002789 C = 0.002671 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1454.947428 B =10038.258640 C =10478.946904 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.793 5.793 2 C 0.079 3.921 3 Si 0.907 3.093 4 H -0.268 1.268 5 H -0.242 1.242 6 H -0.289 1.289 7 C -0.401 4.401 8 H 0.124 0.876 9 C 0.117 3.883 10 C -0.225 4.225 11 C -0.065 4.065 12 C -0.254 4.254 13 C -0.040 4.040 14 C -0.249 4.249 15 C 0.562 3.438 16 O -0.527 6.527 17 N -0.746 5.746 18 C 0.164 3.836 19 C -0.108 4.108 20 C -0.062 4.062 21 C -0.135 4.135 22 C -0.059 4.059 23 C -0.134 4.134 24 C 0.527 3.473 25 O -0.510 6.510 26 O -0.514 6.514 27 C -0.036 4.036 28 H 0.287 0.713 29 H 0.105 0.895 30 H 0.096 0.904 31 H 0.096 0.904 32 H 0.094 0.906 33 H 0.393 0.607 34 H 0.073 0.927 35 H 0.075 0.925 36 H 0.134 0.866 37 H 0.133 0.867 38 H 0.137 0.863 39 H 0.414 0.586 40 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.194 -10.909 -10.376 20.691 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.416 5.416 2 C -0.142 4.142 3 Si 0.733 3.267 4 H -0.194 1.194 5 H -0.165 1.165 6 H -0.216 1.216 7 C -0.428 4.428 8 H 0.142 0.858 9 C 0.112 3.888 10 C -0.244 4.244 11 C -0.084 4.084 12 C -0.274 4.274 13 C -0.059 4.059 14 C -0.254 4.254 15 C 0.355 3.645 16 O -0.404 6.404 17 N -0.401 5.401 18 C 0.041 3.959 19 C -0.109 4.109 20 C -0.081 4.081 21 C -0.153 4.153 22 C -0.078 4.078 23 C -0.135 4.135 24 C 0.371 3.629 25 O -0.399 6.399 26 O -0.326 6.326 27 C -0.054 4.054 28 H 0.098 0.902 29 H 0.122 0.878 30 H 0.114 0.886 31 H 0.115 0.885 32 H 0.112 0.888 33 H 0.227 0.773 34 H 0.092 0.908 35 H 0.093 0.907 36 H 0.152 0.848 37 H 0.151 0.849 38 H 0.155 0.845 39 H 0.273 0.727 40 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 12.715 -10.609 -10.396 19.552 hybrid contribution 1.043 0.211 0.362 1.124 sum 13.757 -10.398 -10.034 19.952 Atomic orbital electron populations 1.69570 1.08218 1.30354 1.33444 1.26385 0.94870 1.01657 0.91274 0.86392 0.81327 0.79785 0.79215 1.19418 1.16540 1.21614 1.20204 0.90849 0.96626 1.35127 0.85805 1.17550 0.93144 0.89457 0.88629 1.21154 0.94696 1.04987 1.03605 1.20741 0.93742 0.96669 0.97226 1.20287 0.97882 1.03143 1.06065 1.20775 0.93553 0.95965 0.95646 1.19374 0.92730 1.06985 1.06324 1.18372 0.86221 0.79938 0.79962 1.90738 1.14162 1.68619 1.66864 1.46050 1.10060 1.39952 1.44057 1.20025 0.92347 0.91150 0.92397 1.20008 0.99092 0.95626 0.96167 1.21508 0.93928 0.98913 0.93739 1.21183 0.97879 0.95339 1.00941 1.21476 0.97646 0.95308 0.93336 1.19003 1.01447 0.94485 0.98539 1.20912 0.76419 0.83935 0.81607 1.90919 1.56324 1.69064 1.23629 1.84543 1.51973 1.39746 1.56334 1.21271 0.92893 0.92652 0.98626 0.90247 0.87769 0.88571 0.88550 0.88755 0.77300 0.90835 0.90698 0.84781 0.84867 0.84470 0.72702 0.84123 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -21.49 13.92 55.56 0.77 -20.71 16 2 C 0.08 2.09 5.47 -17.30 -0.09 2.00 16 3 Si 0.91 20.62 24.51 -169.99 -4.17 16.46 16 4 H -0.27 -5.82 6.76 56.52 0.38 -5.43 16 5 H -0.24 -5.63 6.72 56.52 0.38 -5.25 16 6 H -0.29 -6.35 7.11 56.52 0.40 -5.95 16 7 C -0.40 -11.21 8.31 -37.82 -0.31 -11.52 16 8 H 0.12 3.83 5.96 -52.48 -0.31 3.52 16 9 C 0.12 3.00 5.03 -106.54 -0.54 2.46 16 10 C -0.23 -5.31 7.00 -38.88 -0.27 -5.59 16 11 C -0.07 -1.35 10.01 -39.60 -0.40 -1.75 16 12 C -0.25 -4.98 10.03 -39.37 -0.39 -5.38 16 13 C -0.04 -0.80 9.52 -39.22 -0.37 -1.18 16 14 C -0.25 -5.79 5.92 -104.37 -0.62 -6.41 16 15 C 0.56 12.51 7.72 -12.52 -0.10 12.41 16 16 O -0.53 -13.73 13.53 5.26 0.07 -13.66 16 17 N -0.75 -12.47 5.50 -62.56 -0.34 -12.81 16 18 C 0.16 2.34 5.79 -5.20 -0.03 2.31 16 19 C -0.11 -1.22 5.24 -104.68 -0.55 -1.77 16 20 C -0.06 -0.58 9.69 -39.48 -0.38 -0.96 16 21 C -0.14 -1.06 10.03 -39.64 -0.40 -1.45 16 22 C -0.06 -0.49 9.62 -39.17 -0.38 -0.87 16 23 C -0.13 -1.39 5.87 -104.98 -0.62 -2.00 16 24 C 0.53 5.58 8.27 34.61 0.29 5.86 16 25 O -0.51 -7.05 17.13 -19.24 -0.33 -7.38 16 26 O -0.51 -3.65 12.68 -40.53 -0.51 -4.16 16 27 C -0.04 -0.41 9.24 -39.17 -0.36 -0.77 16 28 H 0.29 6.97 8.29 -40.82 -0.34 6.64 16 29 H 0.10 2.42 5.00 -52.49 -0.26 2.16 16 30 H 0.10 1.71 8.06 -52.49 -0.42 1.28 16 31 H 0.10 1.61 8.06 -52.48 -0.42 1.19 16 32 H 0.09 1.53 6.42 -52.49 -0.34 1.19 16 33 H 0.39 5.71 6.51 -40.82 -0.27 5.45 16 34 H 0.07 1.10 8.08 -51.93 -0.42 0.68 16 35 H 0.07 1.08 8.08 -51.93 -0.42 0.66 16 36 H 0.13 1.11 8.06 -52.49 -0.42 0.69 16 37 H 0.13 0.71 8.06 -52.49 -0.42 0.29 16 38 H 0.14 0.88 7.61 -52.49 -0.40 0.48 16 39 H 0.41 1.15 9.11 45.56 0.42 1.57 16 40 H 0.14 1.72 7.65 -52.49 -0.40 1.32 16 LS Contribution 345.63 15.07 5.21 5.21 Total: -1.00 -33.10 345.63 -8.10 -41.20 By element: Atomic # 1 Polarization: 13.74 SS G_CDS: -3.27 Total: 10.47 kcal Atomic # 6 Polarization: -9.08 SS G_CDS: -5.53 Total: -14.61 kcal Atomic # 7 Polarization: -33.96 SS G_CDS: 0.43 Total: -33.53 kcal Atomic # 8 Polarization: -24.43 SS G_CDS: -0.77 Total: -25.20 kcal Atomic # 14 Polarization: 20.62 SS G_CDS: -4.17 Total: 16.46 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -33.10 -8.10 -41.20 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001594610952.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.257 kcal (2) G-P(sol) polarization free energy of solvation -33.104 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.361 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.097 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.201 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.458 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds