Wall clock time and date at job start Tue Mar 31 2020 14:56:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30625 * 1 3 3 Si 1.86802 * 119.99927 * 2 1 4 4 H 1.48509 * 109.46965 * 87.22186 * 3 2 1 5 5 H 1.48499 * 109.47061 * 207.21814 * 3 2 1 6 6 H 1.48502 * 109.47123 * 327.22284 * 3 2 1 7 7 C 1.40267 * 120.00058 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00188 * 10.51043 * 7 2 1 9 9 C 1.40891 * 120.00197 * 190.50733 * 7 2 1 10 10 C 1.40711 * 120.32596 * 36.33258 * 9 7 2 11 11 C 1.37597 * 119.87929 * 180.02562 * 10 9 7 12 12 C 1.38824 * 120.57318 * 359.97438 * 11 10 9 13 13 C 1.38228 * 120.67423 * 0.02562 * 12 11 10 14 14 C 1.39222 * 120.09079 * 359.71805 * 13 12 11 15 15 C 1.47433 * 120.27950 * 180.27937 * 14 13 12 16 16 O 1.21617 * 119.99806 * 175.66724 * 15 14 13 17 17 N 1.34775 * 120.00159 * 355.67294 * 15 14 13 18 18 C 1.46504 * 120.00020 * 179.97438 * 17 15 14 19 19 C 1.50693 * 109.47206 * 179.97438 * 18 17 15 20 20 C 1.38396 * 119.92474 * 269.72823 * 19 18 17 21 21 C 1.38350 * 120.29903 * 179.72065 * 20 19 18 22 22 C 1.37960 * 120.15301 * 0.55646 * 21 20 19 23 23 C 1.39613 * 119.84818 * 359.71919 * 22 21 20 24 24 C 1.47721 * 120.15337 * 180.02562 * 23 22 21 25 25 O 1.21464 * 120.00235 * 179.97438 * 24 23 22 26 26 O 1.34713 * 119.99571 * 359.97438 * 24 23 22 27 27 C 1.37925 * 119.92605 * 90.00173 * 19 18 17 28 28 H 0.97003 * 120.00012 * 0.02562 * 1 2 3 29 29 H 1.07996 * 120.05741 * 359.97438 * 10 9 7 30 30 H 1.08000 * 119.71536 * 179.97438 * 11 10 9 31 31 H 1.08003 * 119.66168 * 179.97438 * 12 11 10 32 32 H 1.08001 * 119.95020 * 180.02562 * 13 12 11 33 33 H 0.97001 * 120.00277 * 0.02562 * 17 15 14 34 34 H 1.08992 * 109.47032 * 300.00420 * 18 17 15 35 35 H 1.09004 * 109.46511 * 59.99738 * 18 17 15 36 36 H 1.07995 * 119.84993 * 0.02562 * 20 19 18 37 37 H 1.07997 * 119.92261 * 180.25250 * 21 20 19 38 38 H 1.07998 * 120.07725 * 179.69989 * 22 21 20 39 39 H 0.96701 * 116.99984 * 180.02562 * 26 24 23 40 40 H 1.08001 * 120.07276 * 359.97438 * 27 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3063 0.0000 0.0000 3 14 2.2402 1.6178 0.0000 4 1 2.4290 2.0804 1.3985 5 1 3.5660 1.4239 -0.6404 6 1 1.4683 2.6350 -0.7580 7 6 2.0076 -1.2147 0.0005 8 1 1.4812 -2.1423 -0.1697 9 6 3.3988 -1.2249 0.2231 10 6 3.9796 -0.3209 1.1316 11 6 5.3394 -0.3386 1.3415 12 6 6.1467 -1.2423 0.6643 13 6 5.6008 -2.1406 -0.2334 14 6 4.2277 -2.1507 -0.4631 15 6 3.6403 -3.1111 -1.4150 16 8 2.4334 -3.1692 -1.5533 17 7 4.4407 -3.9247 -2.1317 18 6 3.8569 -4.8795 -3.0772 19 6 4.9579 -5.6623 -3.7450 20 6 5.5176 -5.1993 -4.9230 21 6 6.5327 -5.9087 -5.5396 22 6 6.9861 -7.0897 -4.9891 23 6 6.4221 -7.5655 -3.8039 24 6 6.9028 -8.8290 -3.2083 25 8 6.4105 -9.2402 -2.1769 26 8 7.8873 -9.5251 -3.8092 27 6 5.4017 -6.8414 -3.1838 28 1 -0.4850 0.8401 -0.0004 29 1 3.3593 0.3859 1.6626 30 1 5.7824 0.3567 2.0391 31 1 7.2124 -1.2430 0.8399 32 1 6.2398 -2.8388 -0.7535 33 1 5.4032 -3.8788 -2.0211 34 1 3.1973 -5.5630 -2.5427 35 1 3.2857 -4.3396 -3.8326 36 1 5.1636 -4.2774 -5.3603 37 1 6.9679 -5.5397 -6.4565 38 1 7.7753 -7.6450 -5.4740 39 1 8.1681 -10.3461 -3.3822 40 1 4.9613 -7.2037 -2.2666 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001594610952.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:56:39 Heat of formation + Delta-G solvation = -102.745180 kcal Electronic energy + Delta-G solvation = -25766.651602 eV Core-core repulsion = 21895.840239 eV Total energy + Delta-G solvation = -3870.811363 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.115 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.53262 -40.86277 -39.85891 -38.69598 -37.13088 -36.05300 -35.40422 -32.98396 -32.30480 -32.27861 -31.39726 -27.74122 -26.74220 -25.82879 -24.05574 -23.05802 -22.60812 -21.93943 -21.22376 -19.52082 -19.04268 -18.66573 -17.99946 -17.20024 -16.99675 -16.81678 -16.67735 -16.54363 -15.88361 -15.81199 -15.53228 -15.35406 -15.16402 -14.49515 -14.41335 -14.19841 -13.95396 -13.93881 -13.56572 -13.53182 -13.19276 -12.71130 -12.68768 -12.62691 -12.51819 -12.19847 -12.16341 -12.01509 -11.72838 -11.61073 -11.08467 -10.47479 -10.12545 -10.03124 -9.92739 -9.52184 -9.41135 -8.81808 -6.48392 -0.38565 0.19211 0.34016 0.83818 1.24452 1.37770 1.45478 1.47164 1.99626 2.10618 2.25328 2.39815 2.71575 2.85183 3.51196 3.53576 3.82665 3.96558 4.07030 4.19927 4.22290 4.26416 4.26977 4.43840 4.63609 4.65666 4.74836 4.81222 4.85784 4.91512 5.01479 5.20255 5.30025 5.33686 5.44580 5.46563 5.54364 5.54805 5.68608 5.78630 5.86938 5.96428 6.27190 6.47743 6.66136 6.78916 6.90116 6.92380 7.61544 8.22389 Molecular weight = 325.11amu Principal moments of inertia in cm(-1) A = 0.019240 B = 0.002789 C = 0.002671 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1454.947428 B =10038.258640 C =10478.946904 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.849 5.849 2 C 0.035 3.965 3 Si 0.968 3.032 4 H -0.249 1.249 5 H -0.248 1.248 6 H -0.280 1.280 7 C -0.450 4.450 8 H 0.072 0.928 9 C 0.100 3.900 10 C -0.247 4.247 11 C -0.061 4.061 12 C -0.231 4.231 13 C -0.039 4.039 14 C -0.266 4.266 15 C 0.555 3.445 16 O -0.576 6.576 17 N -0.722 5.722 18 C 0.166 3.834 19 C -0.116 4.116 20 C -0.060 4.060 21 C -0.123 4.123 22 C -0.044 4.044 23 C -0.147 4.147 24 C 0.532 3.468 25 O -0.553 6.553 26 O -0.500 6.500 27 C -0.048 4.048 28 H 0.293 0.707 29 H 0.102 0.898 30 H 0.137 0.863 31 H 0.144 0.856 32 H 0.137 0.863 33 H 0.407 0.593 34 H 0.056 0.944 35 H 0.071 0.929 36 H 0.146 0.854 37 H 0.169 0.831 38 H 0.164 0.836 39 H 0.434 0.566 40 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.826 -10.560 -11.787 25.367 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.476 5.476 2 C -0.179 4.179 3 Si 0.790 3.210 4 H -0.174 1.174 5 H -0.171 1.171 6 H -0.207 1.207 7 C -0.479 4.479 8 H 0.090 0.910 9 C 0.096 3.904 10 C -0.266 4.266 11 C -0.080 4.080 12 C -0.250 4.250 13 C -0.058 4.058 14 C -0.270 4.270 15 C 0.348 3.652 16 O -0.457 6.457 17 N -0.377 5.377 18 C 0.043 3.957 19 C -0.117 4.117 20 C -0.078 4.078 21 C -0.141 4.141 22 C -0.062 4.062 23 C -0.148 4.148 24 C 0.378 3.622 25 O -0.446 6.446 26 O -0.313 6.313 27 C -0.067 4.067 28 H 0.104 0.896 29 H 0.120 0.880 30 H 0.154 0.846 31 H 0.162 0.838 32 H 0.155 0.845 33 H 0.244 0.756 34 H 0.075 0.925 35 H 0.089 0.911 36 H 0.164 0.836 37 H 0.187 0.813 38 H 0.182 0.818 39 H 0.296 0.704 40 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 18.422 -10.306 -11.826 24.196 hybrid contribution -0.327 -0.161 0.723 0.810 sum 18.094 -10.468 -11.103 23.670 Atomic orbital electron populations 1.69629 1.09548 1.31381 1.37023 1.27127 0.95554 1.04494 0.90676 0.85475 0.79501 0.75879 0.80126 1.17367 1.17118 1.20661 1.19951 0.92458 0.95590 1.39871 0.90994 1.17816 0.92550 0.90907 0.89115 1.21256 0.96412 1.05158 1.03754 1.21250 0.92466 0.97071 0.97164 1.20938 1.00130 1.00619 1.03264 1.21207 0.92182 0.96691 0.95697 1.19784 0.94504 1.06471 1.06288 1.18536 0.85917 0.80446 0.80342 1.90740 1.16456 1.70224 1.68275 1.45804 1.10268 1.38692 1.42933 1.20036 0.93541 0.90502 0.91652 1.19627 0.99072 0.95636 0.97325 1.21693 0.93986 0.99455 0.92705 1.21548 0.96555 0.94456 1.01514 1.21804 0.97258 0.95231 0.91921 1.19081 1.01552 0.94612 0.99539 1.20970 0.76330 0.83968 0.80881 1.90909 1.57930 1.70177 1.25572 1.84489 1.50449 1.40614 1.55785 1.21130 0.93875 0.93211 0.98506 0.89628 0.88021 0.84554 0.83849 0.84532 0.75622 0.92536 0.91104 0.83622 0.81330 0.81807 0.70395 0.86147 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -49.83 13.92 21.88 0.30 -49.52 16 2 C 0.04 2.01 5.47 85.37 0.47 2.48 16 3 Si 0.97 43.74 24.51 68.60 1.68 45.42 16 4 H -0.25 -10.30 6.76 99.48 0.67 -9.62 16 5 H -0.25 -11.19 6.72 99.48 0.67 -10.52 16 6 H -0.28 -11.99 7.11 99.48 0.71 -11.28 16 7 C -0.45 -27.20 8.31 23.41 0.19 -27.00 16 8 H 0.07 4.98 5.96 -2.91 -0.02 4.96 16 9 C 0.10 5.28 5.03 -21.11 -0.11 5.17 16 10 C -0.25 -11.37 7.00 22.72 0.16 -11.21 16 11 C -0.06 -2.28 10.01 22.26 0.22 -2.05 16 12 C -0.23 -7.73 10.03 22.41 0.22 -7.51 16 13 C -0.04 -1.41 9.52 22.50 0.21 -1.20 16 14 C -0.27 -12.35 5.92 -19.70 -0.12 -12.47 16 15 C 0.55 25.70 7.72 86.67 0.67 26.37 16 16 O -0.58 -32.64 13.53 -4.08 -0.06 -32.70 16 17 N -0.72 -24.22 5.50 -470.10 -2.58 -26.81 16 18 C 0.17 4.88 5.79 85.63 0.50 5.38 16 19 C -0.12 -2.52 5.24 -19.90 -0.10 -2.62 16 20 C -0.06 -0.95 9.69 22.33 0.22 -0.74 16 21 C -0.12 -1.37 10.03 22.23 0.22 -1.15 16 22 C -0.04 -0.55 9.62 22.54 0.22 -0.34 16 23 C -0.15 -2.76 5.87 -20.10 -0.12 -2.88 16 24 C 0.53 10.49 8.27 70.33 0.58 11.07 16 25 O -0.55 -15.29 17.13 19.95 0.34 -14.95 16 26 O -0.50 -5.65 12.68 -56.23 -0.71 -6.37 16 27 C -0.05 -1.09 9.24 22.54 0.21 -0.88 16 28 H 0.29 15.33 8.29 -92.71 -0.77 14.56 16 29 H 0.10 4.67 5.00 -2.91 -0.01 4.65 16 30 H 0.14 4.01 8.06 -2.91 -0.02 3.98 16 31 H 0.14 3.61 8.06 -2.91 -0.02 3.59 16 32 H 0.14 3.72 6.42 -2.91 -0.02 3.70 16 33 H 0.41 11.05 6.51 -92.71 -0.60 10.45 16 34 H 0.06 1.85 8.08 -2.39 -0.02 1.83 16 35 H 0.07 2.15 8.08 -2.39 -0.02 2.13 16 36 H 0.15 1.99 8.06 -2.91 -0.02 1.96 16 37 H 0.17 0.77 8.06 -2.91 -0.02 0.75 16 38 H 0.16 1.22 7.61 -2.91 -0.02 1.20 16 39 H 0.43 1.24 9.11 -74.06 -0.67 0.57 16 40 H 0.12 3.15 7.65 -2.91 -0.02 3.13 16 Total: -1.00 -80.87 345.63 2.40 -78.47 By element: Atomic # 1 Polarization: 26.26 SS G_CDS: -0.23 Total: 26.04 kcal Atomic # 6 Polarization: -23.23 SS G_CDS: 3.65 Total: -19.58 kcal Atomic # 7 Polarization: -74.05 SS G_CDS: -2.28 Total: -76.33 kcal Atomic # 8 Polarization: -53.59 SS G_CDS: -0.43 Total: -54.02 kcal Atomic # 14 Polarization: 43.74 SS G_CDS: 1.68 Total: 45.42 kcal Total: -80.87 2.40 -78.47 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001594610952.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.277 kcal (2) G-P(sol) polarization free energy of solvation -80.867 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.144 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.399 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.468 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.745 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds