Wall clock time and date at job start Tue Mar 31 2020 14:11:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09006 * 109.47008 * 2 1 4 4 O 1.45194 * 109.46908 * 239.99922 * 2 1 3 5 5 C 1.34814 * 117.00205 * 90.00245 * 4 2 1 6 6 O 1.21527 * 119.99708 * 0.02562 * 5 4 2 7 7 C 1.47178 * 120.00126 * 179.97438 * 5 4 2 8 8 C 1.36637 * 125.80333 * 179.97438 * 7 5 4 9 9 C 1.40030 * 106.92507 * 180.02562 * 8 7 5 10 10 C 1.36644 * 106.92565 * 0.02562 * 9 8 7 11 11 C 1.47173 * 125.80731 * 179.97438 * 10 9 8 12 12 O 1.21535 * 120.00047 * 0.02562 * 11 10 9 13 13 O 1.34814 * 120.00405 * 180.02562 * 11 10 9 14 14 O 1.34555 * 125.80453 * 0.30492 * 7 5 4 15 15 C 1.50698 * 109.46983 * 119.99734 * 2 1 3 16 16 O 1.21275 * 119.99828 * 119.99616 * 15 2 1 17 17 N 1.34780 * 120.00283 * 300.00528 * 15 2 1 18 18 C 1.46502 * 119.99631 * 359.97438 * 17 15 2 19 19 C 1.46495 * 120.00141 * 180.02562 * 17 15 2 20 20 C 1.50703 * 109.47500 * 89.99561 * 19 17 15 21 21 H 1.08000 * 119.99470 * 0.02562 * 20 19 17 22 22 C 1.37872 * 119.99976 * 179.97438 * 20 19 17 23 23 N 1.31514 * 119.99712 * 179.97438 * 22 20 19 24 24 Si 1.86793 * 120.00355 * 0.02562 * 22 20 19 25 25 H 1.48502 * 109.47315 * 89.99386 * 24 22 20 26 26 H 1.48496 * 109.47162 * 209.99817 * 24 22 20 27 27 H 1.48501 * 109.47104 * 329.99531 * 24 22 20 28 28 H 1.09007 * 109.46964 * 59.99928 * 1 2 3 29 29 H 1.08999 * 109.47301 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47479 * 300.00313 * 1 2 3 31 31 H 1.07996 * 126.54016 * 0.04118 * 8 7 5 32 32 H 1.08000 * 126.53799 * 179.97438 * 9 8 7 33 33 H 0.96700 * 117.00422 * 180.02562 * 13 11 10 34 34 H 1.09001 * 109.46658 * 90.00705 * 18 17 15 35 35 H 1.09000 * 109.46929 * 210.00117 * 18 17 15 36 36 H 1.08998 * 109.47412 * 330.00845 * 18 17 15 37 37 H 1.09002 * 109.47161 * 209.99270 * 19 17 15 38 38 H 1.09003 * 109.47250 * 329.99456 * 19 17 15 39 39 H 0.97002 * 120.00422 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0139 -0.6845 -1.1855 5 6 2.2180 0.0672 -2.2859 6 8 1.9979 1.2620 -2.2549 7 6 2.7084 -0.5589 -3.5243 8 6 2.9548 0.0867 -4.7031 9 6 3.4039 -0.8800 -5.6111 10 6 3.4121 -2.0750 -4.9484 11 6 3.8147 -3.3717 -5.5162 12 8 4.1813 -3.4411 -6.6729 13 8 3.7769 -4.4826 -4.7533 14 8 2.9844 -1.8653 -3.6900 15 6 2.0323 -0.7103 1.2305 16 8 2.7295 -1.6964 1.1192 17 7 1.7066 -0.2499 2.4546 18 6 0.8647 0.9415 2.5889 19 6 2.1954 -0.9402 3.6508 20 6 3.5228 -0.3561 4.0607 21 1 3.9585 0.4491 3.4878 22 6 4.1804 -0.8489 5.1678 23 7 5.3390 -0.3396 5.5252 24 14 3.4264 -2.2410 6.1592 25 1 3.8872 -3.5432 5.6139 26 1 3.8466 -2.1221 7.5785 27 1 1.9459 -2.1646 6.0733 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3634 0.5139 0.8899 31 1 2.8277 1.1414 -4.8973 32 1 3.6886 -0.7131 -6.6395 33 1 4.0511 -5.3110 -5.1701 34 1 -0.1833 0.6438 2.6221 35 1 1.1226 1.4667 3.5086 36 1 1.0285 1.6002 1.7361 37 1 1.4775 -0.8149 4.4614 38 1 2.3169 -2.0014 3.4337 39 1 5.8019 -0.6865 6.3039 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001604411052.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:11:28 Heat of formation + Delta-G solvation = -167.028093 kcal Electronic energy + Delta-G solvation = -27053.319217 eV Core-core repulsion = 22736.578323 eV Total energy + Delta-G solvation = -4316.740894 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.113 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -43.36712 -40.81044 -40.37450 -39.11825 -36.75645 -36.67660 -35.13455 -33.72422 -32.94460 -31.93396 -30.99414 -28.33718 -26.57423 -26.17805 -24.47875 -23.32521 -22.12102 -21.72953 -20.89977 -19.27877 -19.00499 -18.57278 -17.89710 -17.32299 -17.04505 -16.99368 -16.29753 -16.16044 -15.54362 -15.46679 -14.81625 -14.37463 -14.09605 -13.99599 -13.72410 -13.62444 -13.57520 -13.52544 -13.11158 -12.51835 -12.43336 -12.34691 -12.12273 -11.92147 -11.67059 -11.57190 -11.38037 -11.17901 -11.03117 -10.88464 -10.70143 -10.56429 -10.19531 -9.59464 -9.47814 -9.10707 -8.62882 -7.85531 -6.12462 -4.12331 -0.09142 1.17075 1.57455 2.11555 2.30827 2.44485 2.73045 3.10055 3.26805 3.32547 3.34729 3.64717 4.18348 4.27143 4.36072 4.56170 4.63269 4.78748 4.86625 4.90346 4.94890 5.20302 5.21704 5.36615 5.50432 5.51142 5.58250 5.69156 5.82131 5.85199 6.03539 6.10733 6.13641 6.58737 6.84985 7.16330 7.27090 7.32149 7.54459 8.03455 8.40450 8.75073 8.90549 9.46673 11.00798 Molecular weight = 325.11amu Principal moments of inertia in cm(-1) A = 0.015245 B = 0.002866 C = 0.002586 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1836.188847 B = 9768.839182 C =10826.647409 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.071 3.929 3 H 0.113 0.887 4 O -0.310 6.310 5 C 0.550 3.450 6 O -0.476 6.476 7 C -0.003 4.003 8 C -0.126 4.126 9 C -0.119 4.119 10 C -0.025 4.025 11 C 0.574 3.426 12 O -0.487 6.487 13 O -0.495 6.495 14 O -0.119 6.119 15 C 0.511 3.489 16 O -0.515 6.515 17 N -0.590 5.590 18 C 0.074 3.926 19 C 0.217 3.783 20 C -0.533 4.533 21 H 0.075 0.925 22 C 0.073 3.927 23 N -0.896 5.896 24 Si 0.877 3.123 25 H -0.273 1.273 26 H -0.284 1.284 27 H -0.265 1.265 28 H 0.071 0.929 29 H 0.073 0.927 30 H 0.097 0.903 31 H 0.180 0.820 32 H 0.178 0.822 33 H 0.423 0.577 34 H 0.054 0.946 35 H 0.081 0.919 36 H 0.062 0.938 37 H 0.035 0.965 38 H 0.039 0.961 39 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.172 -0.195 -20.746 23.106 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.013 3.987 3 H 0.131 0.869 4 O -0.224 6.224 5 C 0.393 3.607 6 O -0.364 6.364 7 C -0.056 4.056 8 C -0.146 4.146 9 C -0.138 4.138 10 C -0.078 4.078 11 C 0.417 3.583 12 O -0.377 6.377 13 O -0.307 6.307 14 O -0.013 6.013 15 C 0.295 3.705 16 O -0.390 6.390 17 N -0.324 5.324 18 C -0.069 4.069 19 C 0.097 3.903 20 C -0.572 4.572 21 H 0.093 0.907 22 C -0.130 4.130 23 N -0.534 5.534 24 Si 0.704 3.296 25 H -0.198 1.198 26 H -0.210 1.210 27 H -0.190 1.190 28 H 0.090 0.910 29 H 0.092 0.908 30 H 0.115 0.885 31 H 0.197 0.803 32 H 0.196 0.804 33 H 0.283 0.717 34 H 0.072 0.928 35 H 0.100 0.900 36 H 0.081 0.919 37 H 0.053 0.947 38 H 0.057 0.943 39 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -9.780 -0.303 -20.471 22.689 hybrid contribution 0.010 -0.921 0.325 0.977 sum -9.770 -1.224 -20.147 22.424 Atomic orbital electron populations 1.22443 0.91911 1.04416 1.04679 1.22749 0.95995 0.97818 0.82152 0.86923 1.86755 1.76042 1.40447 1.19195 1.19276 0.74741 0.84450 0.82275 1.90936 1.48024 1.14160 1.83324 1.21231 1.07688 0.81754 0.94930 1.22021 1.00459 1.02093 0.89992 1.22012 1.00522 0.89384 1.01902 1.21094 1.08666 0.94004 0.84008 1.18887 0.74122 0.82447 0.82859 1.91009 1.43991 1.85695 1.16967 1.84693 1.80178 1.19115 1.46713 1.84308 1.62381 1.25792 1.28787 1.19697 0.81629 0.85430 0.83739 1.90731 1.36525 1.25939 1.85763 1.47715 1.50112 1.28536 1.05999 1.21935 0.93740 0.87787 1.03460 1.19739 0.95520 0.93766 0.81262 1.21310 1.03150 1.20511 1.12200 0.90700 1.24855 0.94618 0.96462 0.97021 1.69894 1.14706 1.42241 1.26530 0.86838 0.80010 0.83246 0.79525 1.19819 1.21012 1.19009 0.91038 0.90764 0.88493 0.80302 0.80437 0.71658 0.92816 0.89980 0.91914 0.94728 0.94304 0.92469 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.06 9.19 37.16 0.34 -1.72 16 2 C 0.07 1.12 2.18 -27.88 -0.06 1.06 16 3 H 0.11 1.66 6.42 -51.93 -0.33 1.33 16 4 O -0.31 -5.16 9.43 -48.12 -0.45 -5.62 16 5 C 0.55 7.88 7.93 34.36 0.27 8.15 16 6 O -0.48 -6.93 16.12 -19.28 -0.31 -7.24 16 7 C 0.00 -0.04 7.19 -36.53 -0.26 -0.30 16 8 C -0.13 -1.15 10.60 -39.49 -0.42 -1.57 16 9 C -0.12 -1.00 10.60 -39.49 -0.42 -1.42 16 10 C -0.02 -0.27 7.19 -36.53 -0.26 -0.53 16 11 C 0.57 5.65 8.33 34.36 0.29 5.94 16 12 O -0.49 -5.39 17.65 -19.29 -0.34 -5.73 16 13 O -0.50 -4.08 13.44 -42.22 -0.57 -4.64 16 14 O -0.12 -1.55 10.68 1.26 0.01 -1.54 16 15 C 0.51 10.51 7.15 -10.99 -0.08 10.43 16 16 O -0.51 -13.03 16.08 -14.10 -0.23 -13.25 16 17 N -0.59 -11.78 2.86 -182.96 -0.52 -12.31 16 18 C 0.07 1.05 8.80 59.85 0.53 1.58 16 19 C 0.22 5.19 4.23 -5.19 -0.02 5.17 16 20 C -0.53 -15.15 9.94 -34.44 -0.34 -15.50 16 21 H 0.07 2.34 8.06 -52.49 -0.42 1.91 16 22 C 0.07 2.11 5.47 -17.82 -0.10 2.02 16 23 N -0.90 -27.46 13.96 55.43 0.77 -26.68 16 24 Si 0.88 21.27 27.47 -169.99 -4.67 16.60 16 25 H -0.27 -6.68 7.11 56.52 0.40 -6.28 16 26 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 27 H -0.27 -5.99 6.54 56.52 0.37 -5.62 16 28 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 29 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 30 H 0.10 0.95 4.53 -51.93 -0.24 0.72 16 31 H 0.18 1.20 8.06 -52.49 -0.42 0.77 16 32 H 0.18 1.02 8.06 -52.49 -0.42 0.60 16 33 H 0.42 1.16 9.11 45.56 0.42 1.57 16 34 H 0.05 0.60 6.95 -51.93 -0.36 0.24 16 35 H 0.08 1.21 8.07 -51.93 -0.42 0.79 16 36 H 0.06 0.74 6.01 -51.93 -0.31 0.43 16 37 H 0.03 0.77 7.13 -51.93 -0.37 0.40 16 38 H 0.04 0.99 6.85 -51.93 -0.36 0.64 16 39 H 0.27 7.59 8.31 -40.82 -0.34 7.25 16 LS Contribution 351.07 15.07 5.29 5.29 Total: -1.00 -37.89 351.07 -4.80 -42.69 By element: Atomic # 1 Polarization: 2.38 SS G_CDS: -3.25 Total: -0.87 kcal Atomic # 6 Polarization: 13.85 SS G_CDS: -0.54 Total: 13.31 kcal Atomic # 7 Polarization: -39.24 SS G_CDS: 0.25 Total: -38.99 kcal Atomic # 8 Polarization: -36.14 SS G_CDS: -1.89 Total: -38.02 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -4.67 Total: 16.60 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -37.89 -4.80 -42.69 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001604411052.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -124.339 kcal (2) G-P(sol) polarization free energy of solvation -37.886 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -162.226 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.802 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.689 kcal (6) G-S(sol) free energy of system = (1) + (5) -167.028 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds