Wall clock time and date at job start Tue Mar 31 2020 14:11:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09006 * 109.47008 * 2 1 4 4 O 1.45194 * 109.46908 * 239.99922 * 2 1 3 5 5 C 1.34814 * 117.00205 * 90.00245 * 4 2 1 6 6 O 1.21527 * 119.99708 * 0.02562 * 5 4 2 7 7 C 1.47178 * 120.00126 * 179.97438 * 5 4 2 8 8 C 1.36637 * 125.80333 * 179.97438 * 7 5 4 9 9 C 1.40030 * 106.92507 * 180.02562 * 8 7 5 10 10 C 1.36644 * 106.92565 * 0.02562 * 9 8 7 11 11 C 1.47173 * 125.80731 * 179.97438 * 10 9 8 12 12 O 1.21535 * 120.00047 * 0.02562 * 11 10 9 13 13 O 1.34814 * 120.00405 * 180.02562 * 11 10 9 14 14 O 1.34555 * 125.80453 * 0.30492 * 7 5 4 15 15 C 1.50698 * 109.46983 * 119.99734 * 2 1 3 16 16 O 1.21275 * 119.99828 * 119.99616 * 15 2 1 17 17 N 1.34780 * 120.00283 * 300.00528 * 15 2 1 18 18 C 1.46502 * 119.99631 * 359.97438 * 17 15 2 19 19 C 1.46495 * 120.00141 * 180.02562 * 17 15 2 20 20 C 1.50703 * 109.47500 * 89.99561 * 19 17 15 21 21 H 1.08000 * 119.99470 * 0.02562 * 20 19 17 22 22 C 1.37872 * 119.99976 * 179.97438 * 20 19 17 23 23 N 1.31514 * 119.99712 * 179.97438 * 22 20 19 24 24 Si 1.86793 * 120.00355 * 0.02562 * 22 20 19 25 25 H 1.48502 * 109.47315 * 89.99386 * 24 22 20 26 26 H 1.48496 * 109.47162 * 209.99817 * 24 22 20 27 27 H 1.48501 * 109.47104 * 329.99531 * 24 22 20 28 28 H 1.09007 * 109.46964 * 59.99928 * 1 2 3 29 29 H 1.08999 * 109.47301 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47479 * 300.00313 * 1 2 3 31 31 H 1.07996 * 126.54016 * 0.04118 * 8 7 5 32 32 H 1.08000 * 126.53799 * 179.97438 * 9 8 7 33 33 H 0.96700 * 117.00422 * 180.02562 * 13 11 10 34 34 H 1.09001 * 109.46658 * 90.00705 * 18 17 15 35 35 H 1.09000 * 109.46929 * 210.00117 * 18 17 15 36 36 H 1.08998 * 109.47412 * 330.00845 * 18 17 15 37 37 H 1.09002 * 109.47161 * 209.99270 * 19 17 15 38 38 H 1.09003 * 109.47250 * 329.99456 * 19 17 15 39 39 H 0.97002 * 120.00422 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0139 -0.6845 -1.1855 5 6 2.2180 0.0672 -2.2859 6 8 1.9979 1.2620 -2.2549 7 6 2.7084 -0.5589 -3.5243 8 6 2.9548 0.0867 -4.7031 9 6 3.4039 -0.8800 -5.6111 10 6 3.4121 -2.0750 -4.9484 11 6 3.8147 -3.3717 -5.5162 12 8 4.1813 -3.4411 -6.6729 13 8 3.7769 -4.4826 -4.7533 14 8 2.9844 -1.8653 -3.6900 15 6 2.0323 -0.7103 1.2305 16 8 2.7295 -1.6964 1.1192 17 7 1.7066 -0.2499 2.4546 18 6 0.8647 0.9415 2.5889 19 6 2.1954 -0.9402 3.6508 20 6 3.5228 -0.3561 4.0607 21 1 3.9585 0.4491 3.4878 22 6 4.1804 -0.8489 5.1678 23 7 5.3390 -0.3396 5.5252 24 14 3.4264 -2.2410 6.1592 25 1 3.8872 -3.5432 5.6139 26 1 3.8466 -2.1221 7.5785 27 1 1.9459 -2.1646 6.0733 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3634 0.5139 0.8899 31 1 2.8277 1.1414 -4.8973 32 1 3.6886 -0.7131 -6.6395 33 1 4.0511 -5.3110 -5.1701 34 1 -0.1833 0.6438 2.6221 35 1 1.1226 1.4667 3.5086 36 1 1.0285 1.6002 1.7361 37 1 1.4775 -0.8149 4.4614 38 1 2.3169 -2.0014 3.4337 39 1 5.8019 -0.6865 6.3039 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001604411052.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:11:27 Heat of formation + Delta-G solvation = -194.922998 kcal Electronic energy + Delta-G solvation = -27054.528831 eV Core-core repulsion = 22736.578323 eV Total energy + Delta-G solvation = -4317.950508 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.113 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -44.19139 -41.98866 -41.15278 -40.59251 -37.93555 -37.41156 -36.80927 -34.90046 -34.51451 -33.33316 -31.90550 -30.13388 -27.83843 -27.16545 -25.78820 -24.54664 -23.44125 -22.65018 -21.85019 -20.54273 -20.12298 -19.44216 -19.16077 -18.75006 -18.32946 -18.17372 -17.64333 -17.23698 -17.04362 -16.57154 -16.33903 -15.72225 -15.29659 -14.98024 -14.82870 -14.64649 -14.44244 -14.40365 -14.32796 -14.30368 -13.78528 -13.70901 -13.50049 -13.09241 -12.85444 -12.83472 -12.61077 -12.44515 -12.36223 -12.19028 -12.07891 -12.00265 -11.75809 -11.44222 -10.84546 -10.73475 -10.30733 -9.52030 -8.35219 -6.41461 -0.95321 0.36709 0.68573 1.18865 1.33684 1.38254 1.45092 1.46212 1.53839 1.58518 1.92129 2.29394 2.30964 2.99291 3.26231 3.32939 3.48457 3.67679 3.78387 3.87178 4.08389 4.16670 4.29879 4.48189 4.60243 4.60529 4.63972 4.77393 4.82438 4.90922 4.92216 4.99275 5.11113 5.17326 5.39576 5.42418 5.50125 6.16879 6.22633 6.49700 6.60254 6.70926 7.12088 7.26075 8.81791 Molecular weight = 325.11amu Principal moments of inertia in cm(-1) A = 0.015245 B = 0.002866 C = 0.002586 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1836.188847 B = 9768.839182 C =10826.647409 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.077 3.923 3 H 0.123 0.877 4 O -0.336 6.336 5 C 0.550 3.450 6 O -0.483 6.483 7 C -0.038 4.038 8 C -0.098 4.098 9 C -0.102 4.102 10 C -0.040 4.040 11 C 0.580 3.420 12 O -0.501 6.501 13 O -0.501 6.501 14 O -0.148 6.148 15 C 0.500 3.500 16 O -0.577 6.577 17 N -0.595 5.595 18 C 0.064 3.936 19 C 0.223 3.777 20 C -0.541 4.541 21 H 0.027 0.973 22 C 0.010 3.990 23 N -0.946 5.946 24 Si 0.950 3.050 25 H -0.278 1.278 26 H -0.275 1.275 27 H -0.232 1.232 28 H 0.092 0.908 29 H 0.070 0.930 30 H 0.120 0.880 31 H 0.207 0.793 32 H 0.210 0.790 33 H 0.444 0.556 34 H 0.097 0.903 35 H 0.075 0.925 36 H 0.087 0.913 37 H 0.063 0.937 38 H 0.021 0.979 39 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.618 0.171 -21.827 25.212 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.020 3.980 3 H 0.140 0.860 4 O -0.252 6.252 5 C 0.395 3.605 6 O -0.372 6.372 7 C -0.090 4.090 8 C -0.117 4.117 9 C -0.121 4.121 10 C -0.092 4.092 11 C 0.423 3.577 12 O -0.392 6.392 13 O -0.316 6.316 14 O -0.043 6.043 15 C 0.287 3.713 16 O -0.457 6.457 17 N -0.326 5.326 18 C -0.078 4.078 19 C 0.101 3.899 20 C -0.580 4.580 21 H 0.046 0.954 22 C -0.188 4.188 23 N -0.586 5.586 24 Si 0.772 3.228 25 H -0.204 1.204 26 H -0.200 1.200 27 H -0.155 1.155 28 H 0.110 0.890 29 H 0.090 0.910 30 H 0.138 0.862 31 H 0.224 0.776 32 H 0.227 0.773 33 H 0.308 0.692 34 H 0.115 0.885 35 H 0.094 0.906 36 H 0.106 0.894 37 H 0.081 0.919 38 H 0.039 0.961 39 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -12.276 0.103 -21.566 24.816 hybrid contribution 0.861 -0.993 0.551 1.426 sum -11.415 -0.890 -21.015 23.932 Atomic orbital electron populations 1.22469 0.88266 1.04950 1.06778 1.22736 0.98519 0.96797 0.79990 0.85993 1.86745 1.76730 1.41679 1.20003 1.19513 0.74408 0.84437 0.82188 1.90909 1.48641 1.14138 1.83522 1.21228 1.10447 0.82156 0.95218 1.22428 0.97583 1.03254 0.88392 1.22422 0.98776 0.88051 1.02870 1.21549 1.08816 0.95258 0.83620 1.18796 0.73696 0.82619 0.82581 1.91000 1.44836 1.85955 1.17402 1.84666 1.79925 1.19998 1.47015 1.84264 1.63522 1.26387 1.30137 1.20620 0.80539 0.84885 0.85268 1.90686 1.39316 1.28843 1.86849 1.47793 1.50224 1.29765 1.04864 1.22341 0.94975 0.86069 1.04366 1.19449 0.93953 0.92848 0.83601 1.21561 1.05270 1.19420 1.11724 0.95421 1.25884 0.95014 0.99445 0.98438 1.70053 1.16626 1.44322 1.27555 0.85692 0.80992 0.78506 0.77625 1.20387 1.20029 1.15455 0.88956 0.91044 0.86232 0.77555 0.77342 0.69169 0.88486 0.90613 0.89417 0.91919 0.96104 0.92210 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.47 9.19 71.98 0.66 -2.80 16 2 C 0.08 2.39 2.18 29.85 0.07 2.45 16 3 H 0.12 3.48 6.42 -2.38 -0.02 3.47 16 4 O -0.34 -11.39 9.43 -50.27 -0.47 -11.86 16 5 C 0.55 15.67 7.93 70.17 0.56 16.22 16 6 O -0.48 -13.51 16.12 19.75 0.32 -13.19 16 7 C -0.04 -0.93 7.19 24.25 0.17 -0.76 16 8 C -0.10 -1.56 10.60 22.33 0.24 -1.33 16 9 C -0.10 -1.49 10.60 22.33 0.24 -1.25 16 10 C -0.04 -0.83 7.19 24.25 0.17 -0.65 16 11 C 0.58 11.00 8.33 70.17 0.58 11.58 16 12 O -0.50 -10.49 17.65 19.72 0.35 -10.14 16 13 O -0.50 -8.04 13.44 -55.90 -0.75 -8.79 16 14 O -0.15 -3.91 10.68 -4.51 -0.05 -3.96 16 15 C 0.50 20.88 7.15 87.66 0.63 21.51 16 16 O -0.58 -30.59 16.08 15.79 0.25 -30.34 16 17 N -0.59 -23.45 2.86 -851.14 -2.43 -25.88 16 18 C 0.06 1.64 8.80 127.77 1.12 2.77 16 19 C 0.22 10.64 4.23 85.64 0.36 11.00 16 20 C -0.54 -31.73 9.94 25.60 0.25 -31.48 16 21 H 0.03 1.82 8.06 -2.91 -0.02 1.80 16 22 C 0.01 0.60 5.47 84.65 0.46 1.07 16 23 N -0.95 -59.91 13.96 21.45 0.30 -59.61 16 24 Si 0.95 43.90 27.47 68.60 1.88 45.79 16 25 H -0.28 -13.05 7.11 99.48 0.71 -12.34 16 26 H -0.28 -12.22 7.11 99.48 0.71 -11.51 16 27 H -0.23 -9.38 6.54 99.48 0.65 -8.73 16 28 H 0.09 1.57 8.14 -2.38 -0.02 1.55 16 29 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 30 H 0.12 1.87 4.53 -2.39 -0.01 1.86 16 31 H 0.21 2.06 8.06 -2.91 -0.02 2.03 16 32 H 0.21 1.65 8.06 -2.91 -0.02 1.63 16 33 H 0.44 2.09 9.11 -74.06 -0.67 1.41 16 34 H 0.10 1.72 6.95 -2.39 -0.02 1.70 16 35 H 0.08 2.08 8.07 -2.39 -0.02 2.06 16 36 H 0.09 1.83 6.01 -2.39 -0.01 1.82 16 37 H 0.06 2.64 7.13 -2.39 -0.02 2.63 16 38 H 0.02 1.07 6.85 -2.39 -0.02 1.06 16 39 H 0.27 15.80 8.31 -92.71 -0.77 15.03 16 Total: -1.00 -88.01 351.07 5.32 -82.69 By element: Atomic # 1 Polarization: 6.57 SS G_CDS: 0.40 Total: 6.97 kcal Atomic # 6 Polarization: 22.81 SS G_CDS: 5.52 Total: 28.33 kcal Atomic # 7 Polarization: -83.36 SS G_CDS: -2.13 Total: -85.50 kcal Atomic # 8 Polarization: -77.93 SS G_CDS: -0.35 Total: -78.29 kcal Atomic # 14 Polarization: 43.90 SS G_CDS: 1.88 Total: 45.79 kcal Total: -88.01 5.32 -82.69 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001604411052.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -112.234 kcal (2) G-P(sol) polarization free energy of solvation -88.008 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -200.242 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.319 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.689 kcal (6) G-S(sol) free energy of system = (1) + (5) -194.923 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds