Wall clock time and date at job start Tue Mar 31 2020 14:04:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.42899 * 113.99883 * 2 1 4 4 H 1.08998 * 109.47272 * 29.99679 * 3 2 1 5 5 C 1.53006 * 109.47214 * 270.00027 * 3 2 1 6 6 C 1.50705 * 109.46987 * 150.00060 * 3 2 1 7 7 N 1.29941 * 126.28744 * 45.02553 * 6 3 2 8 8 O 1.21297 * 110.24960 * 179.97438 * 7 6 3 9 9 C 1.33645 * 109.81249 * 0.02562 * 8 7 6 10 10 C 1.50705 * 126.55055 * 179.97438 * 9 8 7 11 11 S 1.80995 * 109.46705 * 270.01950 * 10 9 8 12 12 C 1.76205 * 99.99991 * 180.02562 * 11 10 9 13 13 N 1.32393 * 126.25643 * 0.02562 * 12 11 10 14 14 N 1.28514 * 110.20061 * 179.97438 * 13 12 11 15 15 C 1.33092 * 109.74691 * 0.02562 * 14 13 12 16 16 C 1.39783 * 126.56054 * 179.97438 * 15 14 13 17 17 H 1.08005 * 119.99560 * 180.02562 * 16 15 14 18 18 C 1.40081 * 120.00220 * 0.02562 * 16 15 14 19 19 N 1.30811 * 119.99623 * 359.97438 * 18 16 15 20 20 Si 1.86796 * 119.99903 * 180.02562 * 18 16 15 21 21 H 1.48495 * 109.47538 * 59.99931 * 20 18 16 22 22 H 1.48500 * 109.46864 * 179.97438 * 20 18 16 23 23 H 1.48497 * 109.47041 * 299.99667 * 20 18 16 24 24 N 1.36674 * 126.26068 * 179.97438 * 12 11 10 25 25 C 1.46496 * 127.14869 * 0.02562 * 24 12 11 26 26 N 1.31126 * 106.89446 * 0.22059 * 9 8 7 27 27 H 1.08996 * 109.46931 * 299.99742 * 1 2 3 28 28 H 1.08997 * 109.46951 * 60.00252 * 1 2 3 29 29 H 1.09004 * 109.46846 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.46885 * 59.99818 * 5 3 2 31 31 H 1.08994 * 109.47168 * 180.02562 * 5 3 2 32 32 H 1.08998 * 109.46717 * 299.99992 * 5 3 2 33 33 H 1.08996 * 109.46659 * 150.02220 * 10 9 8 34 34 H 1.09001 * 109.47127 * 30.01808 * 10 9 8 35 35 H 0.97002 * 119.99556 * 179.97438 * 19 18 16 36 36 H 1.09001 * 109.47442 * 270.04566 * 25 24 12 37 37 H 1.08998 * 109.47226 * 30.05058 * 25 24 12 38 38 H 1.09007 * 109.46812 * 150.04918 * 25 24 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 1 1.3450 1.9994 0.5138 5 6 2.2177 1.7714 -1.4425 6 6 3.3387 1.2639 0.7104 7 7 4.2664 0.3674 0.5546 8 8 5.2143 0.6156 1.2696 9 6 4.9737 1.7274 1.9712 10 6 5.8961 2.3741 2.9722 11 16 5.5703 1.6961 4.6185 12 6 6.7515 2.6016 5.5616 13 7 7.5974 3.5072 5.0955 14 7 8.3181 3.9747 6.0513 15 6 7.9763 3.3927 7.1984 16 6 8.5353 3.6384 8.4558 17 1 8.1750 3.1018 9.3211 18 6 9.5627 4.5806 8.5936 19 7 9.9993 5.2302 7.5454 20 14 10.3101 4.9085 10.2738 21 1 10.8999 3.6542 10.8066 22 1 11.3708 5.9405 10.1509 23 1 9.2541 5.3912 11.1996 24 7 6.9614 2.4984 6.9082 25 6 6.2583 1.6222 7.8485 26 7 3.7797 2.1450 1.6259 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 1.2569 1.8014 -1.9563 31 1 2.6614 2.7669 -1.4425 32 1 2.8830 1.0775 -1.9563 33 1 5.7243 3.4504 2.9820 34 1 6.9311 2.1738 2.6951 35 1 10.7104 5.8829 7.6409 36 1 5.3863 2.1413 8.2463 37 1 5.9383 0.7173 7.3321 38 1 6.9274 1.3562 8.6669 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001649782897.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:04:38 Heat of formation + Delta-G solvation = 98.910945 kcal Electronic energy + Delta-G solvation = -23914.907875 eV Core-core repulsion = 20117.037336 eV Total energy + Delta-G solvation = -3797.870539 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 325.100 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -45.73352 -40.60842 -38.78475 -36.00781 -33.93332 -33.74958 -33.37053 -31.41320 -29.54602 -28.89602 -27.21338 -26.56863 -25.60291 -25.03473 -23.50303 -21.36421 -20.92055 -20.48593 -18.34156 -17.86104 -17.44322 -16.98509 -16.33569 -16.03250 -15.61612 -15.51793 -14.91802 -14.79433 -14.49211 -13.91660 -13.73670 -13.62337 -13.31253 -13.09347 -12.89493 -12.49683 -12.32461 -12.29447 -12.13543 -11.73625 -11.48756 -11.46658 -11.33174 -11.15653 -11.00673 -10.77214 -10.45276 -10.23246 -9.90638 -9.85320 -9.68898 -8.81573 -8.55141 -8.49442 -7.00405 -6.71379 -4.65720 0.74457 1.65236 2.20900 2.50366 2.69913 2.87635 2.91555 3.03268 3.05382 3.27016 3.68210 3.82071 3.94681 4.14799 4.33684 4.45406 4.62740 4.87116 4.91260 4.99661 5.10438 5.22901 5.25212 5.25612 5.32956 5.44496 5.48512 5.66972 5.72118 5.81179 5.83161 5.99501 6.64408 6.64724 6.81037 7.16604 7.39231 7.77923 8.02037 8.10187 8.62828 8.76830 10.20791 10.52349 Molecular weight = 325.10amu Principal moments of inertia in cm(-1) A = 0.036643 B = 0.002256 C = 0.002189 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 763.948273 B =12409.830659 C =12787.226105 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.376 6.376 3 C 0.181 3.819 4 H 0.095 0.905 5 C -0.169 4.169 6 C 0.163 3.837 7 N -0.356 5.356 8 O 0.091 5.909 9 C 0.205 3.795 10 C -0.014 4.014 11 S -0.007 6.007 12 C 0.036 3.964 13 N -0.281 5.281 14 N -0.330 5.330 15 C 0.350 3.650 16 C -0.445 4.445 17 H 0.085 0.915 18 C 0.078 3.922 19 N -0.734 5.734 20 Si 0.922 3.078 21 H -0.265 1.265 22 H -0.276 1.276 23 H -0.265 1.265 24 N -0.513 5.513 25 C 0.100 3.900 26 N -0.461 5.461 27 H 0.047 0.953 28 H 0.046 0.954 29 H 0.091 0.909 30 H 0.073 0.927 31 H 0.074 0.926 32 H 0.070 0.930 33 H 0.139 0.861 34 H 0.132 0.868 35 H 0.281 0.719 36 H 0.057 0.943 37 H 0.066 0.934 38 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.963 -6.890 -9.646 18.316 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.294 6.294 3 C 0.122 3.878 4 H 0.113 0.887 5 C -0.227 4.227 6 C -0.110 4.110 7 N -0.061 5.061 8 O 0.029 5.971 9 C -0.016 4.016 10 C -0.164 4.164 11 S 0.218 5.782 12 C -0.335 4.335 13 N -0.128 5.128 14 N -0.178 5.178 15 C 0.106 3.894 16 C -0.485 4.485 17 H 0.103 0.897 18 C -0.148 4.148 19 N -0.358 5.358 20 Si 0.746 3.254 21 H -0.189 1.189 22 H -0.200 1.200 23 H -0.189 1.189 24 N -0.216 5.216 25 C -0.045 4.045 26 N -0.196 5.196 27 H 0.065 0.935 28 H 0.065 0.935 29 H 0.110 0.890 30 H 0.092 0.908 31 H 0.093 0.907 32 H 0.089 0.911 33 H 0.157 0.843 34 H 0.150 0.850 35 H 0.092 0.908 36 H 0.076 0.924 37 H 0.085 0.915 38 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -14.239 -7.228 -11.000 19.390 hybrid contribution 0.520 0.482 1.605 1.754 sum -13.719 -6.746 -9.395 17.944 Atomic orbital electron populations 1.22888 0.79954 1.03375 1.00412 1.87996 1.20372 1.25989 1.95021 1.20010 0.86705 0.86304 0.94817 0.88687 1.22256 1.03434 1.02410 0.94600 1.25467 0.98948 0.89655 0.96936 1.74660 0.96963 1.21712 1.12771 1.85373 1.34966 1.37026 1.39754 1.27812 0.92511 0.85900 0.95359 1.21668 0.99893 1.03778 0.91074 1.84735 1.44456 1.51295 0.97739 1.25112 1.10392 1.11555 0.86466 1.74527 1.04080 1.07134 1.27080 1.75461 1.22538 1.25227 0.94578 1.21614 0.85119 0.86089 0.96584 1.18097 1.17634 1.21889 0.90854 0.89706 1.25808 0.95754 0.94509 0.98742 1.69989 1.19750 1.16011 1.30048 0.86155 0.79072 0.79002 0.81220 1.18922 1.20034 1.18921 1.45978 1.33489 1.36714 1.05382 1.21521 0.96886 0.92985 0.93074 1.71886 1.08105 1.27096 1.12561 0.93478 0.93529 0.89048 0.90836 0.90745 0.91063 0.84320 0.85014 0.90789 0.92410 0.91539 0.90194 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 10.82 101.05 1.09 1.30 16 2 O -0.38 -4.22 10.33 -35.23 -0.36 -4.59 16 3 C 0.18 1.94 3.27 -27.88 -0.09 1.84 16 4 H 0.10 0.86 7.79 -51.93 -0.40 0.46 16 5 C -0.17 -1.43 9.51 37.16 0.35 -1.07 16 6 C 0.16 2.28 7.10 -156.38 -1.11 1.17 16 7 N -0.36 -5.38 12.16 30.89 0.38 -5.00 16 8 O 0.09 1.35 11.31 18.10 0.20 1.55 16 9 C 0.21 2.97 7.77 -13.06 -0.10 2.87 16 10 C -0.01 -0.21 5.85 36.01 0.21 0.00 16 11 S -0.01 -0.12 21.77 -107.50 -2.34 -2.46 16 12 C 0.04 0.82 8.09 -87.27 -0.71 0.12 16 13 N -0.28 -7.29 11.62 30.90 0.36 -6.93 16 14 N -0.33 -9.54 10.48 31.26 0.33 -9.21 16 15 C 0.35 9.42 7.53 -154.82 -1.17 8.25 16 16 C -0.44 -11.37 9.05 -38.31 -0.35 -11.72 16 17 H 0.08 1.95 7.30 -52.48 -0.38 1.57 16 18 C 0.08 1.93 5.50 -17.30 -0.10 1.83 16 19 N -0.73 -19.58 11.94 55.56 0.66 -18.91 16 20 Si 0.92 17.97 29.56 -169.99 -5.03 12.95 16 21 H -0.26 -5.04 7.11 56.52 0.40 -4.64 16 22 H -0.28 -5.27 7.11 56.52 0.40 -4.87 16 23 H -0.26 -5.05 7.11 56.52 0.40 -4.65 16 24 N -0.51 -11.88 3.26 -123.18 -0.40 -12.28 16 25 C 0.10 1.75 10.88 59.84 0.65 2.40 16 26 N -0.46 -6.81 11.55 -9.87 -0.11 -6.93 16 27 H 0.05 0.29 8.08 -51.93 -0.42 -0.13 16 28 H 0.05 0.24 7.87 -51.93 -0.41 -0.17 16 29 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.07 0.46 7.87 -51.93 -0.41 0.05 16 31 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.14 2.10 8.14 -51.92 -0.42 1.67 16 34 H 0.13 1.87 8.14 -51.92 -0.42 1.45 16 35 H 0.28 6.77 8.30 -40.82 -0.34 6.43 16 36 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 37 H 0.07 1.02 7.85 -51.93 -0.41 0.61 16 38 H 0.08 1.31 7.52 -51.93 -0.39 0.92 16 LS Contribution 352.07 15.07 5.31 5.31 Total: -1.00 -32.98 352.07 -6.81 -39.79 By element: Atomic # 1 Polarization: 4.23 SS G_CDS: -4.49 Total: -0.27 kcal Atomic # 6 Polarization: 8.30 SS G_CDS: -1.31 Total: 7.00 kcal Atomic # 7 Polarization: -60.48 SS G_CDS: 1.21 Total: -59.27 kcal Atomic # 8 Polarization: -2.88 SS G_CDS: -0.16 Total: -3.04 kcal Atomic # 14 Polarization: 17.97 SS G_CDS: -5.03 Total: 12.95 kcal Atomic # 16 Polarization: -0.12 SS G_CDS: -2.34 Total: -2.46 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -32.98 -6.81 -39.79 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001649782897.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.700 kcal (2) G-P(sol) polarization free energy of solvation -32.978 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 105.721 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.810 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.789 kcal (6) G-S(sol) free energy of system = (1) + (5) 98.911 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds