Wall clock time and date at job start Tue Mar 31 2020 14:04:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.42899 * 113.99883 * 2 1 4 4 H 1.08998 * 109.47272 * 29.99679 * 3 2 1 5 5 C 1.53006 * 109.47214 * 270.00027 * 3 2 1 6 6 C 1.50705 * 109.46987 * 150.00060 * 3 2 1 7 7 N 1.29941 * 126.28744 * 45.02553 * 6 3 2 8 8 O 1.21297 * 110.24960 * 179.97438 * 7 6 3 9 9 C 1.33645 * 109.81249 * 0.02562 * 8 7 6 10 10 C 1.50705 * 126.55055 * 179.97438 * 9 8 7 11 11 S 1.80995 * 109.46705 * 270.01950 * 10 9 8 12 12 C 1.76205 * 99.99991 * 180.02562 * 11 10 9 13 13 N 1.32393 * 126.25643 * 0.02562 * 12 11 10 14 14 N 1.28514 * 110.20061 * 179.97438 * 13 12 11 15 15 C 1.33092 * 109.74691 * 0.02562 * 14 13 12 16 16 C 1.39783 * 126.56054 * 179.97438 * 15 14 13 17 17 H 1.08005 * 119.99560 * 180.02562 * 16 15 14 18 18 C 1.40081 * 120.00220 * 0.02562 * 16 15 14 19 19 N 1.30811 * 119.99623 * 359.97438 * 18 16 15 20 20 Si 1.86796 * 119.99903 * 180.02562 * 18 16 15 21 21 H 1.48495 * 109.47538 * 59.99931 * 20 18 16 22 22 H 1.48500 * 109.46864 * 179.97438 * 20 18 16 23 23 H 1.48497 * 109.47041 * 299.99667 * 20 18 16 24 24 N 1.36674 * 126.26068 * 179.97438 * 12 11 10 25 25 C 1.46496 * 127.14869 * 0.02562 * 24 12 11 26 26 N 1.31126 * 106.89446 * 0.22059 * 9 8 7 27 27 H 1.08996 * 109.46931 * 299.99742 * 1 2 3 28 28 H 1.08997 * 109.46951 * 60.00252 * 1 2 3 29 29 H 1.09004 * 109.46846 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.46885 * 59.99818 * 5 3 2 31 31 H 1.08994 * 109.47168 * 180.02562 * 5 3 2 32 32 H 1.08998 * 109.46717 * 299.99992 * 5 3 2 33 33 H 1.08996 * 109.46659 * 150.02220 * 10 9 8 34 34 H 1.09001 * 109.47127 * 30.01808 * 10 9 8 35 35 H 0.97002 * 119.99556 * 179.97438 * 19 18 16 36 36 H 1.09001 * 109.47442 * 270.04566 * 25 24 12 37 37 H 1.08998 * 109.47226 * 30.05058 * 25 24 12 38 38 H 1.09007 * 109.46812 * 150.04918 * 25 24 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 1 1.3450 1.9994 0.5138 5 6 2.2177 1.7714 -1.4425 6 6 3.3387 1.2639 0.7104 7 7 4.2664 0.3674 0.5546 8 8 5.2143 0.6156 1.2696 9 6 4.9737 1.7274 1.9712 10 6 5.8961 2.3741 2.9722 11 16 5.5703 1.6961 4.6185 12 6 6.7515 2.6016 5.5616 13 7 7.5974 3.5072 5.0955 14 7 8.3181 3.9747 6.0513 15 6 7.9763 3.3927 7.1984 16 6 8.5353 3.6384 8.4558 17 1 8.1750 3.1018 9.3211 18 6 9.5627 4.5806 8.5936 19 7 9.9993 5.2302 7.5454 20 14 10.3101 4.9085 10.2738 21 1 10.8999 3.6542 10.8066 22 1 11.3708 5.9405 10.1509 23 1 9.2541 5.3912 11.1996 24 7 6.9614 2.4984 6.9082 25 6 6.2583 1.6222 7.8485 26 7 3.7797 2.1450 1.6259 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 1.2569 1.8014 -1.9563 31 1 2.6614 2.7669 -1.4425 32 1 2.8830 1.0775 -1.9563 33 1 5.7243 3.4504 2.9820 34 1 6.9311 2.1738 2.6951 35 1 10.7104 5.8829 7.6409 36 1 5.3863 2.1413 8.2463 37 1 5.9383 0.7173 7.3321 38 1 6.9274 1.3562 8.6669 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001649782897.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:04:38 Heat of formation + Delta-G solvation = 75.968759 kcal Electronic energy + Delta-G solvation = -23915.902723 eV Core-core repulsion = 20117.037336 eV Total energy + Delta-G solvation = -3798.865386 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 325.100 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -46.87833 -42.46470 -39.54511 -37.10941 -35.62106 -35.22993 -34.89404 -32.24093 -31.35863 -30.19196 -28.22197 -27.79847 -27.39426 -25.94798 -24.60317 -22.83264 -22.59000 -21.97734 -19.50415 -19.29413 -18.92439 -18.03832 -17.58900 -17.25136 -16.91959 -16.59242 -16.31130 -16.24482 -15.90467 -15.44055 -15.03525 -14.78326 -14.37465 -13.94358 -13.86187 -13.79590 -13.57410 -13.53945 -13.21990 -12.90964 -12.88291 -12.74872 -12.66344 -12.42241 -12.18619 -12.05872 -11.99549 -11.73651 -11.42436 -11.17543 -10.85302 -10.59455 -10.38099 -10.30275 -8.63892 -8.53186 -6.57906 -0.51377 0.38511 0.85436 1.12772 1.20276 1.44393 1.49551 1.59164 1.62959 2.01111 2.19961 2.45113 2.50205 2.76648 2.94285 3.35481 3.59536 3.82169 3.88758 4.04225 4.09192 4.25740 4.42623 4.46118 4.47497 4.51882 4.56144 4.64709 4.66465 4.76879 4.83680 4.86378 4.96129 5.09705 5.32881 5.56240 5.98368 6.02273 6.22974 6.77000 6.88922 6.91758 8.41701 8.62835 Molecular weight = 325.10amu Principal moments of inertia in cm(-1) A = 0.036643 B = 0.002256 C = 0.002189 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 763.948273 B =12409.830659 C =12787.226105 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.403 6.403 3 C 0.177 3.823 4 H 0.112 0.888 5 C -0.163 4.163 6 C 0.165 3.835 7 N -0.373 5.373 8 O 0.087 5.913 9 C 0.207 3.793 10 C -0.011 4.011 11 S 0.037 5.963 12 C 0.050 3.950 13 N -0.320 5.320 14 N -0.384 5.384 15 C 0.320 3.680 16 C -0.469 4.469 17 H 0.104 0.896 18 C 0.030 3.970 19 N -0.785 5.785 20 Si 1.005 2.995 21 H -0.254 1.254 22 H -0.273 1.273 23 H -0.254 1.254 24 N -0.519 5.519 25 C 0.091 3.909 26 N -0.469 5.469 27 H 0.053 0.947 28 H 0.067 0.933 29 H 0.100 0.900 30 H 0.100 0.900 31 H 0.076 0.924 32 H 0.057 0.943 33 H 0.138 0.862 34 H 0.139 0.861 35 H 0.285 0.715 36 H 0.075 0.925 37 H 0.090 0.910 38 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.760 -7.805 -9.064 19.785 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.321 6.321 3 C 0.117 3.883 4 H 0.129 0.871 5 C -0.221 4.221 6 C -0.109 4.109 7 N -0.080 5.080 8 O 0.027 5.973 9 C -0.014 4.014 10 C -0.161 4.161 11 S 0.262 5.738 12 C -0.324 4.324 13 N -0.165 5.165 14 N -0.231 5.231 15 C 0.075 3.925 16 C -0.509 4.509 17 H 0.122 0.878 18 C -0.192 4.192 19 N -0.410 5.410 20 Si 0.824 3.176 21 H -0.178 1.178 22 H -0.198 1.198 23 H -0.178 1.178 24 N -0.221 5.221 25 C -0.051 4.051 26 N -0.205 5.205 27 H 0.072 0.928 28 H 0.085 0.915 29 H 0.119 0.881 30 H 0.118 0.882 31 H 0.095 0.905 32 H 0.076 0.924 33 H 0.156 0.844 34 H 0.157 0.843 35 H 0.095 0.905 36 H 0.093 0.907 37 H 0.109 0.891 38 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -16.051 -8.165 -10.420 20.806 hybrid contribution 0.866 0.632 1.265 1.658 sum -15.185 -7.532 -9.155 19.265 Atomic orbital electron populations 1.23126 0.77877 1.04511 1.01755 1.87956 1.22675 1.26290 1.95221 1.20297 0.85438 0.86731 0.95798 0.87061 1.22235 1.04659 1.01955 0.93242 1.26169 0.99857 0.88654 0.96222 1.74662 0.97416 1.22507 1.13372 1.85365 1.35114 1.36999 1.39848 1.27598 0.92444 0.86008 0.95354 1.21649 1.00574 1.03732 0.90117 1.84570 1.41767 1.49729 0.97768 1.26074 1.09445 1.09765 0.87104 1.74405 1.05721 1.09234 1.27171 1.75328 1.24572 1.27331 0.95884 1.22011 0.86498 0.87212 0.96819 1.18601 1.18393 1.22803 0.91108 0.87817 1.26953 0.95633 0.93547 1.03025 1.70133 1.20772 1.17118 1.32951 0.84923 0.78134 0.79089 0.75482 1.17804 1.19761 1.17827 1.46312 1.32956 1.36584 1.06229 1.21880 0.97249 0.93185 0.92810 1.71906 1.08152 1.27458 1.12948 0.92838 0.91456 0.88115 0.88172 0.90463 0.92416 0.84363 0.84301 0.90465 0.90690 0.89138 0.89145 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.26 10.82 113.37 1.23 1.49 16 2 O -0.40 -8.35 10.33 -148.98 -1.54 -9.89 16 3 C 0.18 3.46 3.27 29.85 0.10 3.55 16 4 H 0.11 1.76 7.79 -2.39 -0.02 1.74 16 5 C -0.16 -2.43 9.51 71.98 0.68 -1.75 16 6 C 0.16 4.39 7.10 138.47 0.98 5.37 16 7 N -0.37 -10.99 12.16 -60.35 -0.73 -11.72 16 8 O 0.09 2.51 11.31 74.82 0.85 3.36 16 9 C 0.21 5.81 7.77 88.38 0.69 6.50 16 10 C -0.01 -0.32 5.85 71.24 0.42 0.10 16 11 S 0.04 1.23 21.77 -56.49 -1.23 0.00 16 12 C 0.05 2.25 8.09 179.18 1.45 3.70 16 13 N -0.32 -17.02 11.62 -56.17 -0.65 -17.68 16 14 N -0.38 -23.03 10.48 -55.02 -0.58 -23.61 16 15 C 0.32 17.63 7.53 133.24 1.00 18.63 16 16 C -0.47 -24.22 9.05 23.09 0.21 -24.02 16 17 H 0.10 4.71 7.30 -2.91 -0.02 4.69 16 18 C 0.03 1.48 5.50 85.29 0.47 1.95 16 19 N -0.78 -43.28 11.94 21.85 0.26 -43.02 16 20 Si 1.00 36.65 29.56 68.60 2.03 38.68 16 21 H -0.25 -8.75 7.11 99.48 0.71 -8.04 16 22 H -0.27 -9.70 7.11 99.48 0.71 -9.00 16 23 H -0.25 -8.77 7.11 99.48 0.71 -8.06 16 24 N -0.52 -23.89 3.26 -543.62 -1.77 -25.66 16 25 C 0.09 3.02 10.88 127.77 1.39 4.41 16 26 N -0.47 -13.29 11.55 -303.23 -3.50 -16.79 16 27 H 0.05 0.54 8.08 -2.39 -0.02 0.52 16 28 H 0.07 0.49 7.87 -2.39 -0.02 0.47 16 29 H 0.10 0.95 8.14 -2.38 -0.02 0.93 16 30 H 0.10 0.95 7.87 -2.39 -0.02 0.93 16 31 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 32 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 33 H 0.14 4.14 8.14 -2.40 -0.02 4.12 16 34 H 0.14 3.91 8.14 -2.39 -0.02 3.89 16 35 H 0.28 14.23 8.30 -92.71 -0.77 13.46 16 36 H 0.07 2.23 8.14 -2.39 -0.02 2.21 16 37 H 0.09 2.53 7.85 -2.39 -0.02 2.51 16 38 H 0.09 2.79 7.52 -2.38 -0.02 2.77 16 Total: -1.00 -73.99 352.07 2.85 -71.15 By element: Atomic # 1 Polarization: 14.13 SS G_CDS: 1.10 Total: 15.23 kcal Atomic # 6 Polarization: 11.34 SS G_CDS: 8.62 Total: 19.95 kcal Atomic # 7 Polarization: -131.50 SS G_CDS: -6.98 Total: -138.47 kcal Atomic # 8 Polarization: -5.84 SS G_CDS: -0.69 Total: -6.53 kcal Atomic # 14 Polarization: 36.65 SS G_CDS: 2.03 Total: 38.68 kcal Atomic # 16 Polarization: 1.23 SS G_CDS: -1.23 Total: 0.00 kcal Total: -73.99 2.85 -71.15 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001649782897.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 147.116 kcal (2) G-P(sol) polarization free energy of solvation -73.993 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.122 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.846 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.147 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.969 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds