Wall clock time and date at job start Tue Mar 31 2020 13:54:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31415 * 1 3 3 Si 1.86796 * 120.00086 * 2 1 4 4 H 1.48501 * 109.46764 * 264.98792 * 3 2 1 5 5 H 1.48500 * 109.47069 * 24.98481 * 3 2 1 6 6 H 1.48493 * 109.47470 * 144.98493 * 3 2 1 7 7 C 1.38950 * 119.99659 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99689 * 201.39199 * 7 2 1 9 9 N 1.37095 * 120.00407 * 21.38759 * 7 2 1 10 10 C 1.46497 * 119.99530 * 11.50993 * 9 7 2 11 11 C 1.50697 * 109.47393 * 264.66198 * 10 9 7 12 12 O 1.20825 * 119.99941 * 0.02562 * 11 10 9 13 13 O 1.34227 * 120.00344 * 179.97438 * 11 10 9 14 14 C 1.34772 * 120.00284 * 191.50920 * 9 7 2 15 15 O 1.21296 * 119.99700 * 0.02562 * 14 9 7 16 16 C 1.50700 * 120.00227 * 180.02562 * 14 9 7 17 17 C 1.53000 * 109.47105 * 179.97438 * 16 14 9 18 18 C 1.52999 * 109.46807 * 179.97438 * 17 16 14 19 19 O 1.42897 * 109.46749 * 179.97438 * 18 17 16 20 20 C 1.35903 * 116.99974 * 180.02562 * 19 18 17 21 21 C 1.38769 * 120.03850 * 359.72209 * 20 19 18 22 22 C 1.38142 * 119.99057 * 179.74669 * 21 20 19 23 23 C 1.38244 * 120.07821 * 0.53574 * 22 21 20 24 24 C 1.38474 * 120.09027 * 359.74339 * 23 22 21 25 25 F 1.35092 * 120.00071 * 180.02562 * 24 23 22 26 26 C 1.38386 * 120.00165 * 359.97438 * 24 23 22 27 27 H 0.97001 * 120.00114 * 359.97438 * 1 2 3 28 28 H 1.09001 * 109.47801 * 24.66672 * 10 9 7 29 29 H 1.09005 * 109.46739 * 144.66381 * 10 9 7 30 30 H 0.96699 * 117.00267 * 180.02562 * 13 11 10 31 31 H 1.08997 * 109.47024 * 59.99542 * 16 14 9 32 32 H 1.09003 * 109.46701 * 299.99919 * 16 14 9 33 33 H 1.08999 * 109.47005 * 59.99841 * 17 16 14 34 34 H 1.08998 * 109.46932 * 299.99876 * 17 16 14 35 35 H 1.09008 * 109.46991 * 60.00277 * 18 17 16 36 36 H 1.08995 * 109.47759 * 300.00398 * 18 17 16 37 37 H 1.07998 * 120.00499 * 0.02562 * 21 20 19 38 38 H 1.08004 * 119.95605 * 180.27902 * 22 21 20 39 39 H 1.08008 * 119.95512 * 179.76714 * 23 22 21 40 40 H 1.07998 * 120.03877 * 180.02562 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 2.6016 1.9851 -1.3948 5 1 1.3966 2.6809 0.5914 6 1 3.4887 1.4731 0.8033 7 6 2.0088 -1.2034 0.0005 8 1 3.0331 -1.2355 0.3417 9 7 1.3942 -2.3500 -0.4319 10 6 0.1062 -2.2736 -1.1257 11 6 -1.0107 -2.4851 -0.1363 12 8 -0.7569 -2.6794 1.0289 13 8 -2.2875 -2.4568 -0.5493 14 6 1.9748 -3.5474 -0.2188 15 8 3.0411 -3.6106 0.3560 16 6 1.2994 -4.8077 -0.6947 17 6 2.1621 -6.0176 -0.3299 18 6 1.4760 -7.2971 -0.8125 19 8 2.2820 -8.4270 -0.4723 20 6 1.8130 -9.6505 -0.8329 21 6 0.5987 -9.7613 -1.4955 22 6 0.1254 -11.0050 -1.8662 23 6 0.8546 -12.1410 -1.5682 24 6 2.0639 -12.0347 -0.9020 25 9 2.7753 -13.1460 -0.6121 26 6 2.5443 -10.7901 -0.5341 27 1 -0.4850 0.8400 0.0004 28 1 0.0004 -1.2925 -1.5887 29 1 0.0614 -3.0449 -1.8946 30 1 -2.9693 -2.5974 0.1219 31 1 1.1722 -4.7655 -1.7764 32 1 0.3238 -4.8995 -0.2173 33 1 2.2897 -6.0599 0.7518 34 1 3.1375 -5.9255 -0.8075 35 1 1.3481 -7.2550 -1.8942 36 1 0.5007 -7.3890 -0.3346 37 1 0.0260 -8.8750 -1.7253 38 1 -0.8176 -11.0902 -2.3859 39 1 0.4808 -13.1127 -1.8556 40 1 3.4876 -10.7065 -0.0149 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000739077607.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:54:38 Heat of formation + Delta-G solvation = -176.128672 kcal Electronic energy + Delta-G solvation = -26727.355359 eV Core-core repulsion = 22422.592623 eV Total energy + Delta-G solvation = -4304.762735 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.120 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -49.17061 -40.30238 -39.56068 -38.32335 -37.51272 -35.40981 -34.68381 -33.46675 -31.80119 -31.06674 -29.98527 -27.90846 -27.24675 -24.74373 -23.30793 -22.70976 -21.42220 -21.10459 -19.12821 -18.48268 -17.28461 -17.04433 -16.85530 -16.51424 -16.46273 -16.16568 -16.11898 -15.84010 -15.66456 -14.85441 -14.56623 -14.43271 -14.32162 -14.08117 -14.00005 -13.07777 -13.03871 -12.64609 -12.32350 -12.15211 -12.10939 -11.92190 -11.73845 -11.57018 -11.48527 -11.18493 -10.98935 -10.89587 -10.57434 -10.47841 -10.41970 -10.31380 -9.76570 -9.16639 -9.10377 -8.61375 -8.54164 -8.02899 -6.51721 -3.94031 0.84746 1.02442 2.85484 3.10039 3.20926 3.25920 3.31788 3.33300 3.56973 3.99168 4.08534 4.16982 4.45012 4.63587 4.70002 4.75114 4.91296 4.94664 4.99654 5.08258 5.12156 5.20216 5.51638 5.54276 5.63436 5.69209 5.79307 5.79989 5.94461 5.97511 6.04716 6.30053 6.40193 6.42277 6.53279 6.59391 7.18094 7.38929 7.48459 7.89024 8.29540 8.91455 9.01946 9.23495 9.75907 10.56264 Molecular weight = 325.12amu Principal moments of inertia in cm(-1) A = 0.024336 B = 0.002344 C = 0.002185 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1150.278692 B =11942.729847 C =12814.029543 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.887 5.887 2 C 0.026 3.974 3 Si 0.931 3.069 4 H -0.276 1.276 5 H -0.285 1.285 6 H -0.270 1.270 7 C -0.301 4.301 8 H 0.110 0.890 9 N -0.433 5.433 10 C 0.140 3.860 11 C 0.489 3.511 12 O -0.508 6.508 13 O -0.533 6.533 14 C 0.460 3.540 15 O -0.575 6.575 16 C -0.131 4.131 17 C -0.098 4.098 18 C 0.059 3.941 19 O -0.306 6.306 20 C 0.167 3.833 21 C -0.221 4.221 22 C -0.050 4.050 23 C -0.199 4.199 24 C 0.137 3.863 25 F -0.136 7.136 26 C -0.194 4.194 27 H 0.272 0.728 28 H 0.139 0.861 29 H 0.076 0.924 30 H 0.392 0.608 31 H 0.081 0.919 32 H 0.079 0.921 33 H 0.081 0.919 34 H 0.081 0.919 35 H 0.065 0.935 36 H 0.065 0.935 37 H 0.137 0.863 38 H 0.135 0.865 39 H 0.135 0.865 40 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.940 -16.552 -7.508 18.834 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.175 4.175 3 Si 0.758 3.242 4 H -0.202 1.202 5 H -0.211 1.211 6 H -0.194 1.194 7 C -0.428 4.428 8 H 0.128 0.872 9 N -0.153 5.153 10 C 0.014 3.986 11 C 0.329 3.671 12 O -0.394 6.394 13 O -0.344 6.344 14 C 0.249 3.751 15 O -0.458 6.458 16 C -0.172 4.172 17 C -0.136 4.136 18 C -0.016 4.016 19 O -0.219 6.219 20 C 0.120 3.880 21 C -0.240 4.240 22 C -0.068 4.068 23 C -0.218 4.218 24 C 0.118 3.882 25 F -0.115 7.115 26 C -0.213 4.213 27 H 0.082 0.918 28 H 0.157 0.843 29 H 0.094 0.906 30 H 0.248 0.752 31 H 0.100 0.900 32 H 0.098 0.902 33 H 0.100 0.900 34 H 0.100 0.900 35 H 0.084 0.916 36 H 0.083 0.917 37 H 0.155 0.845 38 H 0.153 0.847 39 H 0.153 0.847 40 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -3.936 -16.379 -7.059 18.265 hybrid contribution -0.555 0.745 0.554 1.082 sum -4.491 -15.635 -6.505 17.519 Atomic orbital electron populations 1.69815 1.06039 1.28032 1.48875 1.25220 0.95397 1.00002 0.96907 0.85844 0.79366 0.80406 0.78564 1.20176 1.21096 1.19409 1.19782 0.98037 0.83284 1.41705 0.87222 1.43498 1.15971 1.05790 1.50009 1.20894 0.80954 1.05492 0.91288 1.23975 0.82361 0.70787 0.89954 1.90626 1.83912 1.45140 1.19736 1.84533 1.17969 1.85743 1.46141 1.19863 0.87582 0.83951 0.83724 1.90545 1.23609 1.86196 1.45426 1.21464 0.99933 0.93937 1.01817 1.21190 0.99605 0.89236 1.03561 1.23048 0.94328 0.84092 1.00140 1.86119 1.48108 1.12272 1.75404 1.18686 0.91668 0.85372 0.92257 1.21417 0.97392 0.99524 1.05673 1.20793 0.98854 0.90948 0.96216 1.21020 0.95371 1.00423 1.04947 1.17285 0.90848 0.81928 0.98167 1.91509 1.77771 1.50737 1.91453 1.20291 1.03454 0.89206 1.08397 0.91786 0.84334 0.90594 0.75152 0.90023 0.90231 0.90045 0.89999 0.91636 0.91686 0.84526 0.84679 0.84743 0.83861 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -22.51 9.27 55.50 0.51 -22.00 16 2 C 0.03 0.67 4.95 -17.47 -0.09 0.58 16 3 Si 0.93 20.13 29.60 -169.99 -5.03 15.09 16 4 H -0.28 -5.77 7.11 56.52 0.40 -5.37 16 5 H -0.29 -6.15 7.11 56.52 0.40 -5.75 16 6 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 7 C -0.30 -8.08 9.42 -14.93 -0.14 -8.22 16 8 H 0.11 3.11 7.31 -52.48 -0.38 2.73 16 9 N -0.43 -10.51 2.17 -116.10 -0.25 -10.76 16 10 C 0.14 2.89 4.98 -5.20 -0.03 2.86 16 11 C 0.49 10.28 6.05 36.00 0.22 10.50 16 12 O -0.51 -12.73 17.03 -18.75 -0.32 -13.05 16 13 O -0.53 -8.96 13.42 -39.25 -0.53 -9.49 16 14 C 0.46 10.67 7.44 -10.99 -0.08 10.59 16 15 O -0.57 -15.38 15.59 5.54 0.09 -15.29 16 16 C -0.13 -2.19 4.31 -27.88 -0.12 -2.31 16 17 C -0.10 -1.51 4.87 -26.73 -0.13 -1.64 16 18 C 0.06 0.70 4.74 37.16 0.18 0.87 16 19 O -0.31 -4.06 10.14 -19.43 -0.20 -4.26 16 20 C 0.17 1.95 6.69 -39.23 -0.26 1.69 16 21 C -0.22 -2.12 9.04 -39.42 -0.36 -2.48 16 22 C -0.05 -0.41 10.04 -39.61 -0.40 -0.80 16 23 C -0.20 -1.74 10.02 -39.49 -0.40 -2.14 16 24 C 0.14 1.44 7.30 -39.44 -0.29 1.16 16 25 F -0.14 -1.49 17.27 2.25 0.04 -1.45 16 26 C -0.19 -2.19 9.97 -39.37 -0.39 -2.58 16 27 H 0.27 6.61 8.31 -40.82 -0.34 6.27 16 28 H 0.14 3.02 6.01 -51.93 -0.31 2.71 16 29 H 0.08 1.22 6.66 -51.93 -0.35 0.87 16 30 H 0.39 4.97 9.10 45.56 0.41 5.39 16 31 H 0.08 1.10 7.41 -51.93 -0.38 0.72 16 32 H 0.08 1.29 7.56 -51.93 -0.39 0.90 16 33 H 0.08 1.41 8.10 -51.93 -0.42 0.99 16 34 H 0.08 1.32 8.10 -51.93 -0.42 0.90 16 35 H 0.07 0.64 7.67 -51.92 -0.40 0.25 16 36 H 0.06 0.69 7.65 -51.93 -0.40 0.29 16 37 H 0.14 1.10 6.30 -52.49 -0.33 0.77 16 38 H 0.14 0.72 8.06 -52.48 -0.42 0.30 16 39 H 0.13 0.90 8.06 -52.48 -0.42 0.48 16 40 H 0.14 1.53 8.06 -52.49 -0.42 1.10 16 LS Contribution 349.99 15.07 5.27 5.27 Total: -1.00 -33.36 349.99 -6.47 -39.84 By element: Atomic # 1 Polarization: 11.79 SS G_CDS: -3.78 Total: 8.01 kcal Atomic # 6 Polarization: 10.36 SS G_CDS: -2.28 Total: 8.08 kcal Atomic # 7 Polarization: -33.03 SS G_CDS: 0.26 Total: -32.76 kcal Atomic # 8 Polarization: -41.13 SS G_CDS: -0.96 Total: -42.08 kcal Atomic # 9 Polarization: -1.49 SS G_CDS: 0.04 Total: -1.45 kcal Atomic # 14 Polarization: 20.13 SS G_CDS: -5.03 Total: 15.09 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -33.36 -6.47 -39.84 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000739077607.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -136.292 kcal (2) G-P(sol) polarization free energy of solvation -33.365 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -169.657 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.471 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.836 kcal (6) G-S(sol) free energy of system = (1) + (5) -176.129 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds