Wall clock time and date at job start Tue Mar 31 2020 13:47:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86798 * 120.00217 * 2 1 4 4 H 1.48506 * 109.47265 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47291 * 300.00291 * 3 2 1 6 6 H 1.48501 * 109.47083 * 60.00355 * 3 2 1 7 7 C 1.37875 * 119.99919 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00368 * 180.02562 * 7 2 1 9 9 C 1.50703 * 120.00067 * 359.97438 * 7 2 1 10 10 N 1.46901 * 109.46973 * 174.72781 * 9 7 2 11 11 C 1.46908 * 110.99662 * 159.07693 * 10 9 7 12 12 C 1.50696 * 109.47015 * 189.99792 * 11 10 9 13 13 C 1.38245 * 119.98662 * 269.73040 * 12 11 10 14 14 C 1.38212 * 120.01035 * 179.72725 * 13 12 11 15 15 C 1.38358 * 119.99049 * 0.54598 * 14 13 12 16 16 Cl 1.73596 * 120.01664 * 179.74922 * 15 14 13 17 17 C 1.38356 * 119.96780 * 359.72158 * 15 14 13 18 18 C 1.38215 * 119.98921 * 0.02562 * 17 15 14 19 19 C 1.46903 * 110.99972 * 283.02751 * 10 9 7 20 20 H 1.08997 * 109.30393 * 189.18904 * 19 10 9 21 21 C 1.52579 * 109.38701 * 69.43915 * 19 10 9 22 22 C 1.52577 * 110.72632 * 169.17262 * 21 19 10 23 23 C 1.53105 * 109.95418 * 70.67577 * 22 21 19 24 24 S 1.81741 * 108.84016 * 296.97746 * 23 22 21 25 25 C 1.53092 * 109.39245 * 308.94539 * 19 10 9 26 26 H 0.96999 * 119.99392 * 359.97438 * 1 2 3 27 27 H 1.08999 * 109.46954 * 54.72379 * 9 7 2 28 28 H 1.09002 * 109.46956 * 294.72669 * 9 7 2 29 29 H 1.08994 * 109.47392 * 310.00088 * 11 10 9 30 30 H 1.09005 * 109.46873 * 70.00135 * 11 10 9 31 31 H 1.07997 * 119.99468 * 359.97438 * 13 12 11 32 32 H 1.08001 * 120.00628 * 180.26610 * 14 13 12 33 33 H 1.08001 * 120.00192 * 180.02562 * 17 15 14 34 34 H 1.07997 * 119.99032 * 179.97438 * 18 17 15 35 35 H 1.09000 * 109.22726 * 289.49830 * 21 19 10 36 36 H 1.09007 * 109.22851 * 48.85083 * 21 19 10 37 37 H 1.08999 * 109.39191 * 310.53079 * 22 21 19 38 38 H 1.08999 * 109.39360 * 190.82290 * 22 21 19 39 39 H 1.08998 * 109.57765 * 177.16729 * 23 22 21 40 40 H 1.08998 * 109.57531 * 56.78449 * 23 22 21 41 41 H 1.09001 * 109.57811 * 302.98268 * 25 19 10 42 42 H 1.09003 * 109.57757 * 63.23167 * 25 19 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7093 1.3463 0.0006 5 1 1.8905 2.3965 -1.2124 6 1 1.8906 2.3964 1.2126 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 7 2.2005 -3.6127 -0.1284 11 6 1.6078 -4.8678 0.3529 12 6 2.6758 -5.9276 0.4378 13 6 2.9301 -6.7410 -0.6508 14 6 3.9134 -7.7093 -0.5754 15 6 4.6355 -7.8722 0.5935 16 17 5.8661 -9.0927 0.6911 17 6 4.3766 -7.0616 1.6844 18 6 3.3967 -6.0900 1.6061 19 6 2.6686 -3.7490 -1.5142 20 1 3.2378 -4.6732 -1.6130 21 6 3.5623 -2.5635 -1.8658 22 6 4.2775 -2.8011 -3.1925 23 6 3.2754 -2.7235 -4.3475 24 16 2.0533 -4.0547 -4.1546 25 6 1.4625 -3.7916 -2.4562 26 1 -0.4849 0.8401 0.0004 27 1 0.5551 -2.5169 -0.8392 28 1 0.6974 -2.5991 0.9331 29 1 1.1737 -4.7096 1.3401 30 1 0.8296 -5.1908 -0.3387 31 1 2.3632 -6.6170 -1.5616 32 1 4.1149 -8.3419 -1.4273 33 1 4.9402 -7.1879 2.5970 34 1 3.1943 -5.4575 2.4577 35 1 2.9515 -1.6640 -1.9434 36 1 4.3033 -2.4264 -1.0781 37 1 4.7416 -3.7873 -3.1818 38 1 5.0474 -2.0419 -3.3298 39 1 3.8003 -2.8440 -5.2951 40 1 2.7699 -1.7580 -4.3281 41 1 0.8027 -4.6100 -2.1681 42 1 0.9202 -2.8478 -2.3982 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001257681663.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:47:09 Heat of formation + Delta-G solvation = 17.853525 kcal Electronic energy + Delta-G solvation = -23725.101417 eV Core-core repulsion = 20435.672722 eV Total energy + Delta-G solvation = -3289.428695 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 325.096 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.64583 -38.03388 -36.44698 -34.46484 -32.83669 -31.33821 -31.00674 -29.41315 -27.38536 -26.71943 -24.66842 -23.11413 -22.68958 -21.49647 -20.66829 -19.00193 -17.03305 -16.68616 -16.34066 -15.48154 -15.27952 -15.03554 -14.64747 -14.49733 -13.86270 -13.76268 -13.64892 -13.40445 -13.23158 -13.03738 -12.76967 -12.61125 -12.15477 -11.82038 -11.45431 -11.38966 -11.25166 -11.20340 -11.02998 -10.84111 -10.78707 -10.69862 -10.62868 -10.41590 -10.04875 -9.69726 -9.50530 -9.09187 -8.92234 -8.54109 -8.45121 -7.71086 -7.10195 -6.11413 -4.10362 1.21278 1.37247 2.13106 2.14956 2.86468 3.23602 3.32871 3.35996 3.68447 4.34691 4.79136 4.85859 4.92857 5.00565 5.13091 5.22832 5.26578 5.31252 5.37486 5.42181 5.46889 5.59869 5.72043 5.74554 5.86497 5.93491 6.05333 6.09923 6.11250 6.23714 6.27339 6.31690 6.32471 6.44391 6.70015 6.77123 6.88212 7.02515 7.19973 7.25986 7.72901 7.96780 8.02852 8.40019 8.95740 9.51582 10.98567 Molecular weight = 325.10amu Principal moments of inertia in cm(-1) A = 0.012796 B = 0.004137 C = 0.003564 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2187.578557 B = 6767.071225 C = 7853.520145 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.055 3.945 3 Si 0.890 3.110 4 H -0.271 1.271 5 H -0.285 1.285 6 H -0.284 1.284 7 C -0.501 4.501 8 H 0.071 0.929 9 C 0.182 3.818 10 N -0.519 5.519 11 C 0.084 3.916 12 C -0.056 4.056 13 C -0.102 4.102 14 C -0.111 4.111 15 C -0.041 4.041 16 Cl -0.084 7.084 17 C -0.113 4.113 18 C -0.087 4.087 19 C 0.099 3.901 20 H 0.078 0.922 21 C -0.122 4.122 22 C -0.121 4.121 23 C -0.074 4.074 24 S -0.291 6.291 25 C -0.108 4.108 26 H 0.261 0.739 27 H 0.011 0.989 28 H 0.025 0.975 29 H 0.082 0.918 30 H 0.036 0.964 31 H 0.129 0.871 32 H 0.129 0.871 33 H 0.129 0.871 34 H 0.133 0.867 35 H 0.099 0.901 36 H 0.073 0.927 37 H 0.065 0.935 38 H 0.068 0.932 39 H 0.094 0.906 40 H 0.083 0.917 41 H 0.090 0.910 42 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.021 -12.713 -2.242 14.695 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.146 4.146 3 Si 0.718 3.282 4 H -0.196 1.196 5 H -0.212 1.212 6 H -0.211 1.211 7 C -0.540 4.540 8 H 0.089 0.911 9 C 0.057 3.943 10 N -0.242 5.242 11 C -0.044 4.044 12 C -0.057 4.057 13 C -0.121 4.121 14 C -0.130 4.130 15 C -0.068 4.068 16 Cl -0.056 7.056 17 C -0.132 4.132 18 C -0.106 4.106 19 C -0.011 4.011 20 H 0.096 0.904 21 C -0.159 4.159 22 C -0.160 4.160 23 C -0.222 4.222 24 S -0.065 6.065 25 C -0.258 4.258 26 H 0.070 0.930 27 H 0.028 0.972 28 H 0.043 0.957 29 H 0.101 0.899 30 H 0.054 0.946 31 H 0.147 0.853 32 H 0.147 0.853 33 H 0.147 0.853 34 H 0.151 0.849 35 H 0.117 0.883 36 H 0.092 0.908 37 H 0.083 0.917 38 H 0.086 0.914 39 H 0.113 0.887 40 H 0.102 0.898 41 H 0.108 0.892 42 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 7.048 -13.352 -2.665 15.331 hybrid contribution 0.068 1.604 0.342 1.641 sum 7.115 -11.748 -2.323 13.930 Atomic orbital electron populations 1.69955 1.06000 1.26696 1.51022 1.24968 0.94791 0.99146 0.95691 0.86556 0.80231 0.83810 0.77594 1.19558 1.21159 1.21054 1.21288 0.93923 0.89398 1.49349 0.91110 1.19968 0.90177 0.87454 0.96712 1.62483 1.40844 1.02713 1.18189 1.21128 0.92675 0.89391 1.01181 1.20077 0.97091 0.95335 0.93216 1.21085 0.97600 0.94827 0.98585 1.20961 0.96216 0.99282 0.96556 1.20867 0.94710 0.94676 0.96536 1.98348 1.54020 1.54694 1.98508 1.21017 0.98840 0.95642 0.97667 1.21036 0.94579 0.96588 0.98354 1.21770 0.93495 0.99127 0.86735 0.90411 1.21823 0.99295 0.99929 0.94856 1.21802 0.97459 1.02113 0.94667 1.23403 0.97806 0.99212 1.01826 1.86414 1.52974 1.45505 1.21655 1.24330 1.02687 1.06315 0.92424 0.92970 0.97180 0.95719 0.89931 0.94566 0.85329 0.85341 0.85316 0.84883 0.88308 0.90807 0.91656 0.91354 0.88738 0.89789 0.89193 0.87760 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.93 13.29 55.43 0.74 -24.20 16 2 C 0.06 1.45 5.46 -17.82 -0.10 1.35 16 3 Si 0.89 20.45 29.54 -169.99 -5.02 15.43 16 4 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 5 H -0.29 -6.57 7.11 56.52 0.40 -6.16 16 6 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 7 C -0.50 -12.56 6.75 -34.44 -0.23 -12.79 16 8 H 0.07 1.77 6.03 -52.48 -0.32 1.46 16 9 C 0.18 4.16 4.51 -4.97 -0.02 4.14 16 10 N -0.52 -9.72 4.43 -229.71 -1.02 -10.73 16 11 C 0.08 1.34 5.00 -4.97 -0.02 1.31 16 12 C -0.06 -0.79 4.91 -104.62 -0.51 -1.31 16 13 C -0.10 -1.33 7.85 -39.59 -0.31 -1.65 16 14 C -0.11 -1.36 9.83 -39.55 -0.39 -1.75 16 15 C -0.04 -0.51 6.32 -39.49 -0.25 -0.76 16 16 Cl -0.08 -0.95 28.96 -51.86 -1.50 -2.45 16 17 C -0.11 -1.37 9.83 -39.55 -0.39 -1.76 16 18 C -0.09 -1.14 9.70 -39.59 -0.38 -1.53 16 19 C 0.10 1.70 1.85 -67.88 -0.13 1.57 16 20 H 0.08 1.28 5.21 -51.93 -0.27 1.01 16 21 C -0.12 -2.15 3.52 -27.16 -0.10 -2.24 16 22 C -0.12 -1.75 5.75 -26.89 -0.15 -1.91 16 23 C -0.07 -1.06 6.46 37.21 0.24 -0.82 16 24 S -0.29 -4.56 22.33 -107.50 -2.40 -6.96 16 25 C -0.11 -1.85 4.93 37.21 0.18 -1.67 16 26 H 0.26 6.95 8.31 -40.82 -0.34 6.61 16 27 H 0.01 0.26 5.33 -51.93 -0.28 -0.02 16 28 H 0.02 0.62 7.71 -51.93 -0.40 0.21 16 29 H 0.08 1.31 7.76 -51.93 -0.40 0.90 16 30 H 0.04 0.56 6.44 -51.93 -0.33 0.23 16 31 H 0.13 1.63 7.81 -52.49 -0.41 1.22 16 32 H 0.13 1.35 8.06 -52.49 -0.42 0.93 16 33 H 0.13 1.33 8.06 -52.49 -0.42 0.91 16 34 H 0.13 1.66 8.06 -52.49 -0.42 1.23 16 35 H 0.10 2.04 5.90 -51.93 -0.31 1.73 16 36 H 0.07 1.38 7.55 -51.92 -0.39 0.99 16 37 H 0.06 0.91 8.06 -51.93 -0.42 0.50 16 38 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 39 H 0.09 1.15 8.14 -51.93 -0.42 0.73 16 40 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 41 H 0.09 1.48 6.60 -51.93 -0.34 1.13 16 42 H 0.10 2.11 6.16 -51.93 -0.32 1.79 16 LS Contribution 349.99 15.07 5.27 5.27 Total: -1.00 -26.27 349.99 -12.36 -38.63 By element: Atomic # 1 Polarization: 10.67 SS G_CDS: -5.86 Total: 4.81 kcal Atomic # 6 Polarization: -17.24 SS G_CDS: -2.57 Total: -19.80 kcal Atomic # 7 Polarization: -34.65 SS G_CDS: -0.28 Total: -34.93 kcal Atomic # 14 Polarization: 20.45 SS G_CDS: -5.02 Total: 15.43 kcal Atomic # 16 Polarization: -4.56 SS G_CDS: -2.40 Total: -6.96 kcal Atomic # 17 Polarization: -0.95 SS G_CDS: -1.50 Total: -2.45 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -26.27 -12.36 -38.63 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001257681663.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.483 kcal (2) G-P(sol) polarization free energy of solvation -26.272 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.211 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.357 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.629 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.854 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds