Wall clock time and date at job start Tue Mar 31 2020 14:55:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52995 * 109.47460 * 2 1 4 4 H 1.09002 * 109.47106 * 304.99698 * 3 2 1 5 5 C 1.50708 * 109.47215 * 185.00004 * 3 2 1 6 6 H 1.07995 * 119.99526 * 239.99690 * 5 3 2 7 7 C 1.37875 * 119.99855 * 59.99965 * 5 3 2 8 8 N 1.31520 * 119.99957 * 0.02562 * 7 5 3 9 9 Si 1.86795 * 119.99828 * 180.02562 * 7 5 3 10 10 H 1.48501 * 109.47205 * 0.02562 * 9 7 5 11 11 H 1.48498 * 109.47352 * 119.99889 * 9 7 5 12 12 H 1.48503 * 109.47276 * 239.99620 * 9 7 5 13 13 N 1.46504 * 109.47313 * 65.00045 * 3 2 1 14 14 C 1.34776 * 119.99401 * 274.72666 * 13 3 2 15 15 O 1.21542 * 120.00481 * 0.27170 * 14 13 3 16 16 C 1.47845 * 119.99470 * 180.27536 * 14 13 3 17 17 C 1.39596 * 120.14663 * 353.07482 * 16 14 13 18 18 C 1.37938 * 119.85554 * 179.97438 * 17 16 14 19 19 C 1.38379 * 120.14555 * 0.02562 * 18 17 16 20 20 C 1.38342 * 120.28899 * 359.97438 * 19 18 17 21 21 S 1.76202 * 119.92356 * 180.02562 * 20 19 18 22 22 C 1.81406 * 104.44932 * 111.01495 * 21 20 19 23 23 O 1.42099 * 104.27713 * 227.08681 * 21 20 19 24 24 O 1.42101 * 104.28005 * 354.94301 * 21 20 19 25 25 C 1.37973 * 120.14652 * 359.74632 * 20 19 18 26 26 C 1.50700 * 120.07422 * 180.25225 * 25 20 19 27 27 H 1.09000 * 109.47209 * 59.99957 * 1 2 3 28 28 H 1.08995 * 109.47902 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.46918 * 300.00205 * 1 2 3 30 30 H 1.09001 * 109.46918 * 239.99795 * 2 1 3 31 31 H 1.09000 * 109.47209 * 120.00043 * 2 1 3 32 32 H 0.97001 * 119.99348 * 180.02562 * 8 7 5 33 33 H 0.97000 * 119.99815 * 95.00132 * 13 3 2 34 34 H 1.08005 * 120.07550 * 0.02562 * 17 16 14 35 35 H 1.08003 * 119.92709 * 179.97438 * 18 17 16 36 36 H 1.08003 * 119.85566 * 180.02562 * 19 18 17 37 37 H 1.08995 * 109.46849 * 53.57557 * 22 21 20 38 38 H 1.09002 * 109.47064 * 173.57885 * 22 21 20 39 39 H 1.08995 * 109.46740 * 293.57877 * 22 21 20 40 40 H 1.08999 * 109.47476 * 263.28053 * 26 25 20 41 41 H 1.08993 * 109.47171 * 23.27844 * 26 25 20 42 42 H 1.09004 * 109.47371 * 143.28034 * 26 25 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9815 -0.8419 5 6 3.5420 1.4442 -0.1238 6 1 4.1472 1.8887 0.6523 7 6 4.1433 0.8782 -1.2280 8 7 3.4061 0.3373 -2.1733 9 14 6.0049 0.8797 -1.3811 10 1 6.5988 1.5438 -0.1930 11 1 6.4961 -0.5193 -1.4626 12 1 6.4000 1.6153 -2.6092 13 7 1.6525 2.0975 1.2518 14 6 0.4373 2.6693 1.3650 15 8 -0.3389 2.6371 0.4303 16 6 0.0485 3.3356 2.6262 17 6 0.8754 3.2508 3.7477 18 6 0.5071 3.8753 4.9212 19 6 -0.6794 4.5843 4.9884 20 6 -1.5034 4.6722 3.8806 21 16 -3.0117 5.5780 3.9767 22 6 -2.7363 7.0289 2.9232 23 8 -3.9771 4.7140 3.3930 24 8 -3.1031 5.9629 5.3415 25 6 -1.1439 4.0570 2.6991 26 6 -2.0400 4.1586 1.4917 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3635 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 1.8932 -0.5139 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 3.8293 -0.0612 -2.9499 33 1 2.2720 2.1231 1.9978 34 1 1.8019 2.6982 3.6965 35 1 1.1457 3.8101 5.7897 36 1 -0.9630 5.0717 5.9094 37 1 -2.4101 6.7038 1.9353 38 1 -3.6645 7.5931 2.8320 39 1 -1.9689 7.6613 3.3694 40 1 -2.6678 3.2698 1.4293 41 1 -2.6705 5.0432 1.5806 42 1 -1.4298 4.2363 0.5918 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001194438708.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:55:44 Heat of formation + Delta-G solvation = -77.003301 kcal Electronic energy + Delta-G solvation = -25959.912535 eV Core-core repulsion = 22225.661374 eV Total energy + Delta-G solvation = -3734.251160 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 325.118 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.23188 -38.23825 -37.35075 -36.11322 -35.26314 -33.23753 -32.44744 -31.72422 -30.51613 -29.80031 -27.48681 -26.67964 -24.07398 -23.18989 -22.11225 -20.56156 -19.60822 -19.07432 -18.07221 -16.75927 -16.54574 -16.31844 -15.95990 -15.68714 -15.42636 -15.03581 -14.66376 -14.39337 -13.94946 -13.75572 -13.57625 -13.39889 -12.99887 -12.76197 -12.47365 -12.35071 -12.24408 -12.14064 -12.05266 -11.85354 -11.81034 -11.55673 -11.31371 -11.21312 -11.00285 -10.89288 -10.74736 -10.34800 -10.24505 -9.68289 -9.46771 -9.13392 -9.01069 -8.90940 -8.57310 -7.91019 -6.19257 -4.29106 -0.14595 0.59868 0.96586 2.64317 2.94331 3.18660 3.26955 3.28891 3.60610 3.82664 3.93649 4.01453 4.29865 4.47530 4.54956 4.65031 4.73749 4.79523 5.03323 5.12431 5.21278 5.29544 5.47418 5.55217 5.68323 5.81235 5.91803 6.10778 6.15754 6.35211 6.40357 6.43029 6.60169 6.68992 6.99391 7.13916 7.28613 7.34846 7.54735 7.64837 7.82127 8.10774 8.53352 8.68546 8.98021 9.38314 10.86000 Molecular weight = 325.12amu Principal moments of inertia in cm(-1) A = 0.023654 B = 0.003146 C = 0.002996 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1183.451452 B = 8898.784220 C = 9343.901873 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.128 4.128 3 C 0.270 3.730 4 H 0.052 0.948 5 C -0.536 4.536 6 H 0.061 0.939 7 C 0.067 3.933 8 N -0.880 5.880 9 Si 0.901 3.099 10 H -0.273 1.273 11 H -0.282 1.282 12 H -0.282 1.282 13 N -0.700 5.700 14 C 0.542 3.458 15 O -0.535 6.535 16 C -0.147 4.147 17 C -0.031 4.031 18 C -0.155 4.155 19 C -0.005 4.005 20 C -0.675 4.675 21 S 2.503 3.497 22 C -0.657 4.657 23 O -0.930 6.930 24 O -0.945 6.945 25 C 0.067 3.933 26 C -0.144 4.144 27 H 0.051 0.949 28 H 0.023 0.977 29 H 0.038 0.962 30 H 0.100 0.900 31 H 0.031 0.969 32 H 0.265 0.735 33 H 0.387 0.613 34 H 0.136 0.864 35 H 0.136 0.864 36 H 0.146 0.854 37 H 0.138 0.862 38 H 0.133 0.867 39 H 0.133 0.867 40 H 0.102 0.898 41 H 0.049 0.951 42 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.910 11.197 12.412 18.493 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.166 4.166 3 C 0.169 3.831 4 H 0.070 0.930 5 C -0.575 4.575 6 H 0.079 0.921 7 C -0.136 4.136 8 N -0.518 5.518 9 Si 0.729 3.271 10 H -0.198 1.198 11 H -0.208 1.208 12 H -0.208 1.208 13 N -0.348 5.348 14 C 0.327 3.673 15 O -0.415 6.415 16 C -0.151 4.151 17 C -0.050 4.050 18 C -0.174 4.174 19 C -0.024 4.024 20 C -0.762 4.762 21 S 2.683 3.317 22 C -0.807 4.807 23 O -0.927 6.927 24 O -0.942 6.942 25 C 0.065 3.935 26 C -0.199 4.199 27 H 0.070 0.930 28 H 0.042 0.958 29 H 0.057 0.943 30 H 0.118 0.882 31 H 0.050 0.950 32 H 0.075 0.925 33 H 0.220 0.780 34 H 0.154 0.846 35 H 0.154 0.846 36 H 0.164 0.836 37 H 0.156 0.844 38 H 0.151 0.849 39 H 0.152 0.848 40 H 0.120 0.880 41 H 0.067 0.933 42 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -9.134 10.821 11.984 18.551 hybrid contribution 2.272 -0.013 -0.055 2.273 sum -6.862 10.809 11.929 17.499 Atomic orbital electron populations 1.21845 0.98243 0.98213 1.01264 1.21937 0.92701 0.99646 1.02356 1.18853 0.94328 0.89261 0.80667 0.93022 1.21245 0.90612 1.39226 1.06390 0.92073 1.24879 0.98651 0.94722 0.95350 1.69903 1.35084 1.37456 1.09313 0.86401 0.84778 0.77827 0.78131 1.19768 1.20836 1.20847 1.46492 1.14365 1.55181 1.18722 1.18016 0.83138 0.79593 0.86536 1.90701 1.51059 1.59669 1.40064 1.20314 0.96370 1.02662 0.95746 1.21735 0.97762 0.93600 0.91923 1.21199 0.97713 1.00028 0.98435 1.21086 0.91745 0.93023 0.96558 1.30307 1.24067 1.21231 1.00619 1.05072 0.74538 0.76670 0.75439 1.30366 1.12432 1.20489 1.17418 1.93628 1.57342 1.62673 1.79062 1.93546 1.85760 1.83999 1.30903 1.19691 0.92175 0.88532 0.93079 1.21569 0.98611 1.02806 0.96928 0.93021 0.95778 0.94281 0.88181 0.95042 0.92543 0.77994 0.84582 0.84607 0.83628 0.84359 0.84892 0.84834 0.87953 0.93252 0.86836 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.01 8.52 37.15 0.32 -2.69 16 2 C -0.13 -3.00 5.45 -26.74 -0.15 -3.15 16 3 C 0.27 6.49 2.24 -69.08 -0.15 6.33 16 4 H 0.05 1.43 7.57 -51.93 -0.39 1.04 16 5 C -0.54 -13.60 8.73 -34.44 -0.30 -13.90 16 6 H 0.06 1.48 7.74 -52.49 -0.41 1.08 16 7 C 0.07 1.75 5.29 -17.82 -0.09 1.66 16 8 N -0.88 -23.92 11.30 55.43 0.63 -23.29 16 9 Si 0.90 20.00 29.54 -169.99 -5.02 14.97 16 10 H -0.27 -5.93 7.11 56.52 0.40 -5.52 16 11 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 12 H -0.28 -6.31 7.11 56.52 0.40 -5.90 16 13 N -0.70 -13.74 4.97 -55.88 -0.28 -14.02 16 14 C 0.54 10.22 6.27 -12.33 -0.08 10.14 16 15 O -0.53 -11.34 10.53 5.33 0.06 -11.29 16 16 C -0.15 -2.25 5.87 -104.97 -0.62 -2.87 16 17 C -0.03 -0.39 9.52 -39.18 -0.37 -0.76 16 18 C -0.15 -1.61 10.03 -39.64 -0.40 -2.01 16 19 C 0.00 -0.05 9.50 -39.49 -0.37 -0.43 16 20 C -0.68 -8.03 5.59 -39.64 -0.22 -8.26 16 21 S 2.50 25.35 5.14 -107.50 -0.55 24.79 16 22 C -0.66 -4.03 10.41 101.05 1.05 -2.98 16 23 O -0.93 -12.47 15.98 -57.54 -0.92 -13.39 16 24 O -0.94 -11.40 16.74 -57.54 -0.96 -12.36 16 25 C 0.07 0.95 5.90 -104.23 -0.61 0.34 16 26 C -0.14 -2.00 7.44 36.01 0.27 -1.73 16 27 H 0.05 1.18 7.85 -51.93 -0.41 0.78 16 28 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.04 0.83 5.66 -51.93 -0.29 0.53 16 30 H 0.10 2.62 5.95 -51.93 -0.31 2.31 16 31 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.26 6.83 8.31 -40.82 -0.34 6.49 16 33 H 0.39 6.54 6.62 -40.82 -0.27 6.27 16 34 H 0.14 1.45 6.47 -52.48 -0.34 1.11 16 35 H 0.14 1.00 8.06 -52.48 -0.42 0.58 16 36 H 0.15 1.28 7.21 -52.48 -0.38 0.90 16 37 H 0.14 0.82 6.14 -51.93 -0.32 0.50 16 38 H 0.13 0.55 8.14 -51.92 -0.42 0.12 16 39 H 0.13 0.59 8.14 -51.93 -0.42 0.16 16 40 H 0.10 1.55 8.14 -51.93 -0.42 1.13 16 41 H 0.05 0.52 3.69 -51.93 -0.19 0.33 16 42 H 0.11 1.75 5.92 -51.93 -0.31 1.44 16 LS Contribution 344.17 15.07 5.19 5.19 Total: -1.00 -33.00 344.17 -8.89 -41.89 By element: Atomic # 1 Polarization: 13.11 SS G_CDS: -5.29 Total: 7.83 kcal Atomic # 6 Polarization: -18.58 SS G_CDS: -1.73 Total: -20.32 kcal Atomic # 7 Polarization: -37.66 SS G_CDS: 0.35 Total: -37.31 kcal Atomic # 8 Polarization: -35.21 SS G_CDS: -1.83 Total: -37.04 kcal Atomic # 14 Polarization: 20.00 SS G_CDS: -5.02 Total: 14.97 kcal Atomic # 16 Polarization: 25.35 SS G_CDS: -0.55 Total: 24.79 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -33.00 -8.89 -41.89 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001194438708.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.117 kcal (2) G-P(sol) polarization free energy of solvation -33.000 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.116 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.887 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.887 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.003 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds