Wall clock time and date at job start Tue Mar 31 2020 15:01:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42903 * 109.47107 * 2 1 4 4 C 1.42906 * 113.99922 * 179.97438 * 3 2 1 5 5 H 1.08999 * 109.47105 * 329.99886 * 4 3 2 6 6 C 1.52993 * 109.46663 * 89.99912 * 4 3 2 7 7 C 1.50699 * 109.47030 * 210.00124 * 4 3 2 8 8 N 1.29400 * 124.70561 * 315.02536 * 7 4 3 9 9 C 1.30911 * 117.46583 * 179.97438 * 8 7 4 10 10 C 1.36763 * 113.93526 * 359.97438 * 9 8 7 11 11 C 1.46493 * 126.18228 * 179.97438 * 10 9 8 12 12 O 1.21605 * 120.00375 * 185.83906 * 11 10 9 13 13 O 1.34884 * 119.99674 * 5.56043 * 11 10 9 14 14 C 1.45205 * 116.99496 * 176.74980 * 13 11 10 15 15 C 1.53009 * 109.46566 * 183.77889 * 14 13 11 16 16 C 1.50700 * 115.54701 * 306.12190 * 15 14 13 17 17 H 1.08002 * 119.99239 * 144.73354 * 16 15 14 18 18 C 1.37875 * 120.00549 * 324.73315 * 16 15 14 19 19 N 1.31509 * 119.99849 * 346.03370 * 18 16 15 20 20 Si 1.86798 * 120.00010 * 166.02838 * 18 16 15 21 21 H 1.48497 * 109.47376 * 0.02562 * 20 18 16 22 22 H 1.48504 * 109.46935 * 120.00261 * 20 18 16 23 23 H 1.48501 * 109.47204 * 239.99989 * 20 18 16 24 24 C 1.52994 * 117.49625 * 160.45980 * 15 14 13 25 25 C 1.52992 * 117.49910 * 91.79740 * 15 14 13 26 26 S 1.70928 * 124.70843 * 135.25393 * 7 4 3 27 27 H 1.09000 * 109.46775 * 59.99884 * 1 2 3 28 28 H 1.08993 * 109.47242 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.47356 * 300.00284 * 1 2 3 30 30 H 1.08996 * 109.47356 * 239.99715 * 2 1 3 31 31 H 1.08995 * 109.46779 * 119.99616 * 2 1 3 32 32 H 1.08996 * 109.47655 * 299.99654 * 6 4 3 33 33 H 1.09007 * 109.47178 * 60.00406 * 6 4 3 34 34 H 1.09012 * 109.46978 * 179.97438 * 6 4 3 35 35 H 1.07997 * 123.03631 * 179.97438 * 9 8 7 36 36 H 1.08997 * 109.47090 * 303.77240 * 14 13 11 37 37 H 1.08992 * 109.47051 * 63.77916 * 14 13 11 38 38 H 0.97008 * 120.00234 * 185.05193 * 19 18 16 39 39 H 1.09003 * 117.50358 * 359.97438 * 24 15 14 40 40 H 1.08998 * 117.49764 * 145.01734 * 24 15 14 41 41 H 1.08998 * 117.49629 * 214.97614 * 25 15 14 42 42 H 1.09005 * 117.50063 * 359.97438 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4309 1.4601 0.0006 5 1 3.8632 0.6017 0.5147 6 6 3.9398 1.5001 -1.4417 7 6 3.8342 2.7265 0.7110 8 7 3.2775 3.8808 0.5322 9 6 3.7416 4.8890 1.2264 10 6 4.7745 4.5599 2.0602 11 6 5.4902 5.4745 2.9531 12 8 6.4632 5.0849 3.5699 13 8 5.0734 6.7503 3.0868 14 6 5.7853 7.5795 4.0428 15 6 5.1161 8.9531 4.1242 16 6 4.9443 9.6712 2.8105 17 1 4.0706 10.2825 2.6396 18 6 5.9025 9.5477 1.8267 19 7 7.0811 9.0417 2.1167 20 14 5.5263 10.0991 0.0821 21 1 4.1406 10.6291 0.0183 22 1 6.4818 11.1634 -0.3175 23 1 5.6578 8.9436 -0.8414 24 6 5.4001 9.8049 5.3630 25 6 4.0293 9.1478 5.1832 26 16 5.0942 2.8385 1.8606 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3634 0.5138 0.8899 30 1 1.8934 -0.5138 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 3.6482 0.5842 -1.9555 33 1 3.5076 2.3587 -1.9558 34 1 5.0265 1.5867 -1.4413 35 1 3.3448 5.8904 1.1478 36 1 5.7615 7.1051 5.0239 37 1 6.8200 7.6979 3.7214 38 1 7.7795 9.0221 1.4437 39 1 6.0632 9.3867 6.1202 40 1 5.4621 10.8847 5.2278 41 1 3.1901 9.7956 4.9299 42 1 3.7906 8.2972 5.8218 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000744276708.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:01:07 Heat of formation + Delta-G solvation = -59.221589 kcal Electronic energy + Delta-G solvation = -24930.880807 eV Core-core repulsion = 21197.400719 eV Total energy + Delta-G solvation = -3733.480088 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 325.118 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.06993 -39.32739 -38.29884 -36.75984 -35.08748 -33.30737 -32.18474 -30.80275 -29.91425 -26.84064 -26.05969 -25.29036 -23.33622 -22.97890 -21.82860 -21.22880 -19.57658 -19.23346 -18.11825 -17.39939 -16.66268 -16.40601 -16.01103 -15.60383 -15.41539 -15.29127 -14.66307 -14.31520 -14.22216 -13.77564 -13.55632 -13.38178 -13.07480 -12.82848 -12.36064 -12.18697 -12.11288 -12.08564 -11.72018 -11.71010 -11.49543 -11.24381 -10.98937 -10.86065 -10.52287 -10.39801 -10.35317 -10.03276 -9.65325 -9.58561 -9.48351 -9.43615 -9.15843 -8.93675 -8.78612 -8.13326 -6.09291 -4.10597 0.17596 0.98432 1.56412 2.49569 3.25949 3.31686 3.35898 3.39688 3.39808 3.53136 3.89188 4.35516 4.41994 4.66123 4.81504 4.90270 4.91746 4.99447 5.02472 5.15519 5.22263 5.40960 5.43805 5.48792 5.59369 5.59925 5.83247 5.89659 5.98487 6.13897 6.17824 6.39875 6.56337 6.62413 6.74233 6.83706 6.92810 7.22629 7.32937 7.37882 7.64341 7.87036 8.29562 8.44203 8.83940 9.48813 10.93678 Molecular weight = 325.12amu Principal moments of inertia in cm(-1) A = 0.015653 B = 0.003206 C = 0.003037 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1788.311353 B = 8730.735197 C = 9217.912609 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.053 3.947 3 O -0.361 6.361 4 C 0.170 3.830 5 H 0.081 0.919 6 C -0.168 4.168 7 C 0.030 3.970 8 N -0.451 5.451 9 C 0.118 3.882 10 C -0.269 4.269 11 C 0.536 3.464 12 O -0.519 6.519 13 O -0.311 6.311 14 C 0.116 3.884 15 C 0.048 3.952 16 C -0.485 4.485 17 H 0.064 0.936 18 C 0.076 3.924 19 N -0.881 5.881 20 Si 0.892 3.108 21 H -0.270 1.270 22 H -0.285 1.285 23 H -0.281 1.281 24 C -0.191 4.191 25 C -0.209 4.209 26 S 0.228 5.772 27 H 0.064 0.936 28 H 0.070 0.930 29 H 0.064 0.936 30 H 0.051 0.949 31 H 0.050 0.950 32 H 0.069 0.931 33 H 0.076 0.924 34 H 0.070 0.930 35 H 0.198 0.802 36 H 0.031 0.969 37 H 0.114 0.886 38 H 0.263 0.737 39 H 0.067 0.933 40 H 0.085 0.915 41 H 0.079 0.921 42 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.909 -18.852 -4.232 20.519 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.024 4.024 3 O -0.280 6.280 4 C 0.108 3.892 5 H 0.099 0.901 6 C -0.227 4.227 7 C -0.244 4.244 8 N -0.165 5.165 9 C -0.040 4.040 10 C -0.392 4.392 11 C 0.379 3.621 12 O -0.411 6.411 13 O -0.225 6.225 14 C 0.043 3.957 15 C 0.047 3.953 16 C -0.522 4.522 17 H 0.082 0.918 18 C -0.127 4.127 19 N -0.518 5.518 20 Si 0.720 3.280 21 H -0.195 1.195 22 H -0.211 1.211 23 H -0.207 1.207 24 C -0.229 4.229 25 C -0.246 4.246 26 S 0.486 5.514 27 H 0.083 0.917 28 H 0.089 0.911 29 H 0.083 0.917 30 H 0.069 0.931 31 H 0.068 0.932 32 H 0.088 0.912 33 H 0.095 0.905 34 H 0.089 0.911 35 H 0.215 0.785 36 H 0.049 0.951 37 H 0.132 0.868 38 H 0.073 0.927 39 H 0.085 0.915 40 H 0.103 0.897 41 H 0.098 0.902 42 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -6.296 -19.591 -4.095 20.982 hybrid contribution -0.165 1.123 -0.792 1.384 sum -6.461 -18.469 -4.887 20.167 Atomic orbital electron populations 1.21728 0.93399 1.02183 1.03501 1.22599 0.96021 0.83635 1.00117 1.88120 1.18705 1.26255 1.94915 1.20396 0.83111 0.90424 0.95247 0.90076 1.22275 1.01820 1.03802 0.94841 1.27337 0.98592 0.97949 1.00560 1.66060 1.28236 0.98046 1.24164 1.22888 0.91515 0.99580 0.90038 1.25297 1.06760 0.97632 1.09479 1.19296 0.81415 0.82259 0.79171 1.90831 1.26136 1.77963 1.46196 1.86590 1.57792 1.19254 1.58897 1.22906 0.99077 0.87200 0.86499 1.18869 0.95368 0.90943 0.90091 1.20439 1.06683 1.28953 0.96104 0.91773 1.24927 0.94673 0.94311 0.98837 1.69816 1.02571 1.45081 1.34310 0.86527 0.78707 0.78269 0.84533 1.19457 1.21084 1.20683 1.22973 0.97797 0.99292 1.02826 1.22975 0.92822 1.02621 1.06198 1.83785 1.31068 1.02154 1.34404 0.91652 0.91070 0.91691 0.93115 0.93223 0.91236 0.90462 0.91071 0.78529 0.95087 0.86842 0.92691 0.91453 0.89680 0.90208 0.91284 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.06 10.28 37.16 0.38 -0.68 16 2 C 0.05 0.41 6.47 37.16 0.24 0.65 16 3 O -0.36 -4.15 9.95 -35.23 -0.35 -4.50 16 4 C 0.17 1.75 3.22 -27.89 -0.09 1.66 16 5 H 0.08 0.61 7.78 -51.93 -0.40 0.21 16 6 C -0.17 -1.49 9.51 37.15 0.35 -1.14 16 7 C 0.03 0.41 6.27 -13.30 -0.08 0.33 16 8 N -0.45 -7.28 10.48 -11.26 -0.12 -7.40 16 9 C 0.12 2.02 11.20 -18.48 -0.21 1.82 16 10 C -0.27 -4.87 6.51 -36.79 -0.24 -5.11 16 11 C 0.54 11.66 7.92 34.06 0.27 11.93 16 12 O -0.52 -12.09 16.75 -19.35 -0.32 -12.42 16 13 O -0.31 -7.39 9.69 -41.00 -0.40 -7.79 16 14 C 0.12 2.85 4.60 37.16 0.17 3.02 16 15 C 0.05 1.18 2.10 -155.66 -0.33 0.85 16 16 C -0.48 -13.01 8.75 -34.44 -0.30 -13.31 16 17 H 0.06 1.72 7.85 -52.49 -0.41 1.31 16 18 C 0.08 2.04 5.15 -17.82 -0.09 1.95 16 19 N -0.88 -24.40 10.92 55.43 0.61 -23.80 16 20 Si 0.89 20.97 29.56 -169.99 -5.03 15.95 16 21 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 22 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 23 H -0.28 -6.64 7.11 56.52 0.40 -6.23 16 24 C -0.19 -4.23 9.96 -26.70 -0.27 -4.50 16 25 C -0.21 -4.49 9.92 -26.70 -0.26 -4.75 16 26 S 0.23 3.16 23.00 -107.50 -2.47 0.68 16 27 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 28 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 29 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.05 0.31 7.87 -51.93 -0.41 -0.10 16 31 H 0.05 0.33 8.08 -51.93 -0.42 -0.09 16 32 H 0.07 0.47 7.87 -51.93 -0.41 0.06 16 33 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 34 H 0.07 0.57 8.14 -51.92 -0.42 0.15 16 35 H 0.20 3.31 8.06 -52.49 -0.42 2.88 16 36 H 0.03 0.71 8.05 -51.93 -0.42 0.29 16 37 H 0.11 3.07 6.09 -51.93 -0.32 2.76 16 38 H 0.26 7.01 8.32 -40.82 -0.34 6.67 16 39 H 0.07 1.39 8.14 -51.93 -0.42 0.96 16 40 H 0.08 1.87 8.14 -51.93 -0.42 1.45 16 41 H 0.08 1.66 8.14 -51.93 -0.42 1.24 16 42 H 0.07 1.37 8.14 -51.93 -0.42 0.95 16 LS Contribution 376.79 15.07 5.68 5.68 Total: -1.00 -30.99 376.79 -9.01 -40.00 By element: Atomic # 1 Polarization: 7.03 SS G_CDS: -6.15 Total: 0.88 kcal Atomic # 6 Polarization: -6.82 SS G_CDS: -0.46 Total: -7.28 kcal Atomic # 7 Polarization: -31.69 SS G_CDS: 0.49 Total: -31.20 kcal Atomic # 8 Polarization: -23.64 SS G_CDS: -1.07 Total: -24.71 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -5.03 Total: 15.95 kcal Atomic # 16 Polarization: 3.16 SS G_CDS: -2.47 Total: 0.68 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -30.99 -9.01 -40.00 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000744276708.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.225 kcal (2) G-P(sol) polarization free energy of solvation -30.986 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.211 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.011 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.997 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.222 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds