Wall clock time and date at job start Tue Mar 31 2020 14:03:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86795 * 120.00366 * 2 1 4 4 H 1.48496 * 109.47193 * 240.00366 * 3 2 1 5 5 H 1.48503 * 109.47131 * 359.97438 * 3 2 1 6 6 H 1.48492 * 109.47388 * 119.99861 * 3 2 1 7 7 C 1.37880 * 119.99572 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99760 * 180.02562 * 7 2 1 9 9 C 1.50702 * 120.00197 * 359.97438 * 7 2 1 10 10 C 1.52991 * 109.47292 * 180.02562 * 9 7 2 11 11 C 1.52999 * 109.47452 * 180.02562 * 10 9 7 12 12 N 1.46501 * 109.47398 * 179.97438 * 11 10 9 13 13 C 1.34772 * 120.00070 * 180.02562 * 12 11 10 14 14 O 1.21594 * 119.99972 * 359.97438 * 13 12 11 15 15 N 1.34770 * 120.00343 * 180.02562 * 13 12 11 16 16 N 1.40104 * 119.99699 * 359.97438 * 15 13 12 17 17 C 1.39881 * 119.99769 * 180.02562 * 16 15 13 18 18 C 1.38818 * 120.00952 * 0.02562 * 17 16 15 19 19 C 1.38356 * 120.27399 * 180.02562 * 18 17 16 20 20 C 1.37883 * 120.29756 * 359.69826 * 19 18 17 21 21 C 1.39752 * 120.00581 * 0.56174 * 20 19 18 22 22 C 1.47586 * 120.13460 * 179.74142 * 21 20 19 23 23 O 1.21485 * 120.00152 * 179.71847 * 22 21 20 24 24 O 1.34728 * 119.99876 * 359.44768 * 22 21 20 25 25 C 1.38944 * 120.00463 * 180.02562 * 17 16 15 26 26 F 1.35101 * 120.14694 * 359.97438 * 25 17 16 27 27 H 0.97000 * 119.99301 * 359.97438 * 1 2 3 28 28 H 1.09001 * 109.47051 * 59.99968 * 9 7 2 29 29 H 1.09009 * 109.46900 * 300.00656 * 9 7 2 30 30 H 1.09001 * 109.47405 * 59.99809 * 10 9 7 31 31 H 1.09008 * 109.46901 * 300.00224 * 10 9 7 32 32 H 1.09001 * 109.47012 * 59.99518 * 11 10 9 33 33 H 1.08994 * 109.47105 * 299.99892 * 11 10 9 34 34 H 0.97003 * 119.99696 * 0.02562 * 12 11 10 35 35 H 0.96998 * 120.00249 * 180.02562 * 15 13 12 36 36 H 0.96998 * 120.00051 * 0.02562 * 16 15 13 37 37 H 1.07995 * 119.86533 * 359.97438 * 18 17 16 38 38 H 1.08007 * 119.84831 * 180.02562 * 19 18 17 39 39 H 1.08003 * 119.99407 * 180.29723 * 20 19 18 40 40 H 0.96704 * 116.99989 * 179.97438 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2843 2.7464 -0.0006 6 1 3.1030 1.6963 1.2124 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1942 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 6 2.2451 -3.6621 -0.0005 11 6 1.4800 -4.9871 -0.0012 12 7 2.4320 -6.1007 -0.0018 13 6 1.9827 -7.3713 -0.0030 14 8 0.7872 -7.5935 -0.0030 15 7 2.8583 -8.3958 -0.0030 16 7 4.2358 -8.1399 -0.0024 17 6 5.1447 -9.2032 -0.0030 18 6 4.6821 -10.5120 -0.0047 19 6 5.5762 -11.5678 -0.0048 20 6 6.9342 -11.3293 -0.0094 21 6 7.4133 -10.0165 -0.0022 22 6 8.8663 -9.7580 -0.0013 23 8 9.2801 -8.6157 -0.0002 24 8 9.7339 -10.7887 0.0038 25 6 6.5108 -8.9495 -0.0018 26 9 6.9646 -7.6770 -0.0007 27 1 -0.4849 0.8401 0.0004 28 1 0.6239 -2.5567 -0.8903 29 1 0.6245 -2.5570 0.8897 30 1 2.8718 -3.6045 0.8894 31 1 2.8718 -3.6044 -0.8906 32 1 0.8536 -5.0446 -0.8914 33 1 0.8531 -5.0451 0.8885 34 1 3.3857 -5.9235 -0.0014 35 1 2.5350 -9.3103 -0.0042 36 1 4.5592 -7.2254 -0.0016 37 1 3.6198 -10.7069 -0.0052 38 1 5.2087 -12.5834 -0.0065 39 1 7.6278 -12.1572 -0.0142 40 1 10.6758 -10.5697 0.0037 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001601065607.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:03:35 Heat of formation + Delta-G solvation = -100.638963 kcal Electronic energy + Delta-G solvation = -26051.212344 eV Core-core repulsion = 21782.015839 eV Total energy + Delta-G solvation = -4269.196505 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.127 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -49.27269 -40.79614 -40.36815 -39.24073 -36.65969 -36.48928 -35.59712 -33.38675 -32.51288 -31.55704 -31.04337 -28.58347 -26.78416 -25.41643 -23.42975 -22.96225 -22.09550 -20.93152 -20.66480 -19.28977 -18.86290 -18.35931 -17.50929 -17.15461 -16.66499 -16.49749 -16.35035 -15.87000 -15.58774 -15.56893 -15.33486 -15.01526 -14.46790 -14.36846 -14.14682 -13.89600 -13.58334 -13.48354 -12.55633 -12.30893 -12.26868 -12.22884 -11.97310 -11.87932 -11.74756 -11.02728 -10.90397 -10.81354 -10.67458 -10.50197 -9.94734 -9.92209 -9.51818 -9.50459 -9.16969 -8.99074 -8.38577 -7.76154 -6.03458 -4.06705 0.00442 0.71627 1.45487 2.03460 2.46075 2.94567 2.96980 3.11980 3.31801 3.36462 3.38727 3.54797 4.13347 4.18973 4.34943 4.43584 4.51783 4.79978 5.06512 5.25086 5.32362 5.33058 5.54405 5.56545 5.70807 5.74753 5.87934 5.98659 6.08304 6.14404 6.29847 6.53253 6.62218 6.85487 6.92089 6.99711 7.40706 7.60364 7.72251 7.89645 7.94680 8.33079 8.37141 8.99523 9.57612 11.07736 Molecular weight = 325.13amu Principal moments of inertia in cm(-1) A = 0.014841 B = 0.002253 C = 0.001959 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1886.189905 B =12426.573224 C =14287.011523 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.057 3.943 3 Si 0.894 3.106 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.524 4.524 8 H 0.055 0.945 9 C 0.025 3.975 10 C -0.122 4.122 11 C 0.132 3.868 12 N -0.736 5.736 13 C 0.710 3.290 14 O -0.572 6.572 15 N -0.536 5.536 16 N -0.541 5.541 17 C 0.184 3.816 18 C -0.138 4.138 19 C -0.086 4.086 20 C -0.092 4.092 21 C -0.114 4.114 22 C 0.525 3.475 23 O -0.495 6.495 24 O -0.510 6.510 25 C 0.092 3.908 26 F -0.114 7.114 27 H 0.262 0.738 28 H 0.020 0.980 29 H 0.020 0.980 30 H 0.055 0.945 31 H 0.055 0.945 32 H 0.067 0.933 33 H 0.067 0.933 34 H 0.390 0.610 35 H 0.430 0.570 36 H 0.430 0.570 37 H 0.136 0.864 38 H 0.142 0.858 39 H 0.147 0.853 40 H 0.417 0.583 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.206 -28.480 -0.018 32.768 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.144 4.144 3 Si 0.722 3.278 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.562 4.562 8 H 0.073 0.927 9 C -0.013 4.013 10 C -0.160 4.160 11 C 0.009 3.991 12 N -0.392 5.392 13 C 0.410 3.590 14 O -0.445 6.445 15 N -0.292 5.292 16 N -0.271 5.271 17 C 0.079 3.921 18 C -0.162 4.162 19 C -0.105 4.105 20 C -0.112 4.112 21 C -0.116 4.116 22 C 0.368 3.632 23 O -0.383 6.383 24 O -0.322 6.322 25 C 0.067 3.933 26 F -0.093 7.093 27 H 0.072 0.928 28 H 0.038 0.962 29 H 0.038 0.962 30 H 0.074 0.926 31 H 0.074 0.926 32 H 0.086 0.914 33 H 0.086 0.914 34 H 0.224 0.776 35 H 0.276 0.724 36 H 0.274 0.726 37 H 0.154 0.846 38 H 0.160 0.840 39 H 0.165 0.835 40 H 0.277 0.723 Dipole moment (debyes) X Y Z Total from point charges 14.610 -28.022 -0.017 31.602 hybrid contribution 1.654 1.433 -0.001 2.189 sum 16.264 -26.589 -0.017 31.169 Atomic orbital electron populations 1.69957 1.06050 1.26840 1.50393 1.25028 0.94874 0.99320 0.95219 0.86630 0.79553 0.83025 0.78625 1.20230 1.21258 1.20227 1.21156 0.92971 0.90910 1.51182 0.92677 1.19018 0.93785 0.90714 0.97746 1.21923 0.99905 0.93190 1.01011 1.21648 0.91181 0.83919 1.02353 1.45477 1.10539 1.04573 1.78580 1.15767 0.84187 0.80637 0.78434 1.91043 1.12061 1.82589 1.58832 1.44590 0.92532 1.09602 1.82492 1.43158 0.93554 1.07002 1.83404 1.17443 0.86344 0.88783 0.99566 1.20664 1.00927 0.89595 1.05012 1.20958 0.92245 0.99343 0.97976 1.21168 0.96142 0.94707 0.99204 1.18761 0.89090 0.93814 1.09973 1.20513 0.87161 0.82485 0.72997 1.90994 1.79699 1.22904 1.44733 1.84517 1.22438 1.39343 1.85942 1.16831 0.89084 0.79443 1.07973 1.91593 1.89178 1.34897 1.93585 0.92845 0.96177 0.96188 0.92625 0.92632 0.91443 0.91439 0.77565 0.72414 0.72616 0.84580 0.84012 0.83529 0.72340 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.72 13.29 55.43 0.74 -25.99 16 2 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 3 Si 0.89 21.55 29.54 -169.99 -5.02 16.53 16 4 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 5 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 6 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 7 C -0.52 -14.58 9.11 -34.44 -0.31 -14.89 16 8 H 0.05 1.48 7.74 -52.49 -0.41 1.07 16 9 C 0.03 0.63 4.97 -27.89 -0.14 0.49 16 10 C -0.12 -2.34 5.27 -26.74 -0.14 -2.48 16 11 C 0.13 2.24 5.67 -4.04 -0.02 2.22 16 12 N -0.74 -10.21 5.52 -65.23 -0.36 -10.57 16 13 C 0.71 10.03 8.68 -86.93 -0.75 9.28 16 14 O -0.57 -10.27 17.18 5.28 0.09 -10.18 16 15 N -0.54 -5.37 6.22 27.63 0.17 -5.20 16 16 N -0.54 -4.86 6.45 32.44 0.21 -4.65 16 17 C 0.18 1.50 6.72 -83.71 -0.56 0.94 16 18 C -0.14 -0.81 9.47 -39.32 -0.37 -1.18 16 19 C -0.09 -0.38 10.02 -39.67 -0.40 -0.78 16 20 C -0.09 -0.50 9.61 -39.15 -0.38 -0.87 16 21 C -0.11 -0.94 5.88 -104.95 -0.62 -1.55 16 22 C 0.53 4.70 8.27 34.54 0.29 4.99 16 23 O -0.50 -6.25 16.12 -19.25 -0.31 -6.56 16 24 O -0.51 -2.69 12.68 -40.57 -0.51 -3.20 16 25 C 0.09 0.88 7.30 -38.76 -0.28 0.60 16 26 F -0.11 -1.35 14.92 2.25 0.03 -1.31 16 27 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 28 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.02 0.53 8.14 -51.92 -0.42 0.11 16 30 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 31 H 0.05 1.03 8.14 -51.92 -0.42 0.60 16 32 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 33 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 34 H 0.39 4.49 6.39 -40.82 -0.26 4.23 16 35 H 0.43 3.42 6.70 -182.60 -1.22 2.20 16 36 H 0.43 3.83 6.19 -182.60 -1.13 2.70 16 37 H 0.14 0.56 6.18 -52.49 -0.32 0.23 16 38 H 0.14 0.24 8.06 -52.48 -0.42 -0.19 16 39 H 0.15 0.52 7.61 -52.48 -0.40 0.12 16 40 H 0.42 0.47 9.11 45.56 0.42 0.88 16 LS Contribution 354.81 15.07 5.35 5.35 Total: -1.00 -36.10 354.81 -8.83 -44.93 By element: Atomic # 1 Polarization: 7.99 SS G_CDS: -5.42 Total: 2.57 kcal Atomic # 6 Polarization: 2.07 SS G_CDS: -3.79 Total: -1.72 kcal Atomic # 7 Polarization: -47.17 SS G_CDS: 0.76 Total: -46.41 kcal Atomic # 8 Polarization: -19.20 SS G_CDS: -0.73 Total: -19.94 kcal Atomic # 9 Polarization: -1.35 SS G_CDS: 0.03 Total: -1.31 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.02 Total: 16.53 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -36.10 -8.83 -44.93 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601065607.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.710 kcal (2) G-P(sol) polarization free energy of solvation -36.099 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.809 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.830 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.929 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.639 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds