Wall clock time and date at job start Tue Mar 31 2020 13:48:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31574 * 1 3 3 Si 1.86799 * 119.99992 * 2 1 4 4 H 1.48507 * 109.46873 * 269.99381 * 3 2 1 5 5 H 1.48496 * 109.47671 * 29.99279 * 3 2 1 6 6 H 1.48505 * 109.46971 * 149.99870 * 3 2 1 7 7 C 1.38626 * 119.99719 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00429 * 0.02562 * 7 2 1 9 9 O 1.34813 * 120.00272 * 180.02562 * 7 2 1 10 10 C 1.35776 * 117.00282 * 174.96802 * 9 7 2 11 11 C 1.38898 * 120.00088 * 5.31967 * 10 9 7 12 12 C 1.38003 * 120.00492 * 179.97438 * 11 10 9 13 13 C 1.38918 * 119.99791 * 359.97438 * 12 11 10 14 14 N 1.39994 * 120.00488 * 179.97438 * 13 12 11 15 15 C 1.34780 * 119.99732 * 35.11953 * 14 13 12 16 16 O 1.21292 * 119.99851 * 355.57047 * 15 14 13 17 17 C 1.50698 * 119.99801 * 175.56655 * 15 14 13 18 18 H 1.08999 * 109.47369 * 300.00250 * 17 15 14 19 19 C 1.53001 * 109.46969 * 179.97438 * 17 15 14 20 20 C 1.53002 * 109.47303 * 180.02562 * 19 17 15 21 21 C 1.52992 * 109.47173 * 59.99914 * 20 19 17 22 22 C 1.53004 * 109.47429 * 300.00226 * 21 20 19 23 23 C 1.53002 * 109.47031 * 60.00415 * 17 15 14 24 24 F 1.39893 * 109.47533 * 59.99951 * 23 17 15 25 25 F 1.39904 * 109.47080 * 299.99421 * 23 17 15 26 26 C 1.38920 * 119.99514 * 0.26019 * 13 12 11 27 27 C 1.38010 * 119.99849 * 359.48639 * 26 13 12 28 28 H 0.97010 * 119.99996 * 0.02562 * 1 2 3 29 29 H 1.08002 * 119.99568 * 0.02562 * 11 10 9 30 30 H 1.07999 * 120.00261 * 180.02562 * 12 11 10 31 31 H 0.97003 * 119.99972 * 215.12508 * 14 13 12 32 32 H 1.09001 * 109.46915 * 59.99841 * 19 17 15 33 33 H 1.08999 * 109.47297 * 300.00316 * 19 17 15 34 34 H 1.09002 * 109.46375 * 300.00116 * 20 19 17 35 35 H 1.08997 * 109.47405 * 180.02562 * 20 19 17 36 36 H 1.08996 * 109.47367 * 180.02562 * 21 20 19 37 37 H 1.09002 * 109.47301 * 60.00214 * 21 20 19 38 38 H 1.09001 * 109.47453 * 179.97438 * 22 21 20 39 39 H 1.09002 * 109.46870 * 300.00252 * 22 21 20 40 40 H 1.08006 * 119.99905 * 179.74337 * 26 13 12 41 41 H 1.08000 * 119.99979 * 180.25900 * 27 26 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3157 0.0000 0.0000 3 14 2.2497 1.6177 0.0000 4 1 2.4973 2.0463 -1.4002 5 1 1.4472 2.6528 0.6998 6 1 3.5473 1.4401 0.7001 7 6 2.0088 -1.2006 0.0005 8 1 1.4688 -2.1359 0.0005 9 8 3.3569 -1.2007 0.0011 10 6 3.9732 -2.4058 0.1077 11 6 3.2213 -3.5736 0.0985 12 6 3.8477 -4.7986 0.2064 13 6 5.2304 -4.8637 0.3235 14 7 5.8659 -6.1062 0.4335 15 6 5.3799 -7.1729 -0.2318 16 8 4.3474 -7.0763 -0.8610 17 6 6.1195 -8.4854 -0.1941 18 1 7.1194 -8.3510 -0.6065 19 6 5.3601 -9.5226 -1.0239 20 6 6.1105 -10.8554 -0.9851 21 6 6.2167 -11.3389 0.4625 22 6 6.9761 -10.3017 1.2924 23 6 6.2255 -8.9696 1.2534 24 9 4.9422 -9.1421 1.7827 25 9 6.9196 -8.0213 2.0126 26 6 5.9820 -3.6955 0.3376 27 6 5.3559 -2.4708 0.2245 28 1 -0.4850 0.8401 -0.0004 29 1 2.1465 -3.5230 0.0062 30 1 3.2631 -5.7066 0.1988 31 1 6.6560 -6.1995 0.9885 32 1 5.2841 -9.1779 -2.0551 33 1 4.3603 -9.6569 -0.6111 34 1 7.1105 -10.7213 -1.3977 35 1 5.5698 -11.5942 -1.5766 36 1 6.7517 -12.2882 0.4902 37 1 5.2168 -11.4729 0.8752 38 1 7.0514 -10.6460 2.3238 39 1 7.9761 -10.1678 0.8797 40 1 7.0567 -3.7458 0.4328 41 1 5.9405 -1.5627 0.2312 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000327946310.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:48:25 Heat of formation + Delta-G solvation = -144.548024 kcal Electronic energy + Delta-G solvation = -27626.196356 eV Core-core repulsion = 23335.175850 eV Total energy + Delta-G solvation = -4291.020506 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.128 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -49.40257 -47.34843 -40.37358 -38.97252 -37.77038 -36.53223 -34.06286 -32.34044 -31.82095 -30.52214 -30.27390 -28.13408 -25.30532 -24.18191 -23.21445 -22.48643 -21.45547 -20.51379 -20.17386 -18.30580 -17.77149 -17.61270 -17.27837 -17.04119 -16.54762 -16.41778 -15.08683 -14.95173 -14.59263 -14.38267 -14.26902 -13.99716 -13.85980 -13.77501 -13.71703 -13.62749 -13.47731 -13.04539 -12.74094 -12.61241 -12.43817 -12.26759 -12.10430 -11.82014 -11.68866 -11.62312 -11.31708 -11.14076 -10.94697 -10.76723 -10.68927 -10.24117 -9.77651 -9.66728 -9.23311 -8.75629 -8.27750 -7.06306 -6.39280 -4.05160 1.92908 2.12057 2.60318 3.04077 3.24277 3.26837 3.34633 3.41393 3.65336 3.77107 3.97885 4.25305 4.41673 4.46797 4.50106 4.55330 4.70357 4.73839 4.84611 4.87688 5.11233 5.12554 5.17230 5.30870 5.45740 5.53633 5.56660 5.62850 5.66917 5.75408 5.94181 6.09007 6.10101 6.24836 6.59356 6.76824 6.90341 7.09701 7.31038 7.53709 7.64387 7.81384 8.04229 8.23689 8.95599 9.57241 10.68333 Molecular weight = 325.13amu Principal moments of inertia in cm(-1) A = 0.030689 B = 0.002611 C = 0.002536 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 912.150330 B =10720.724307 C =11038.420437 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.879 5.879 2 C 0.063 3.937 3 Si 0.906 3.094 4 H -0.273 1.273 5 H -0.283 1.283 6 H -0.259 1.259 7 C -0.389 4.389 8 H 0.107 0.893 9 O -0.216 6.216 10 C 0.153 3.847 11 C -0.207 4.207 12 C -0.066 4.066 13 C 0.041 3.959 14 N -0.657 5.657 15 C 0.508 3.492 16 O -0.511 6.511 17 C -0.146 4.146 18 H 0.125 0.875 19 C -0.102 4.102 20 C -0.124 4.124 21 C -0.123 4.123 22 C -0.155 4.155 23 C 0.297 3.703 24 F -0.188 7.188 25 F -0.197 7.197 26 C -0.094 4.094 27 C -0.177 4.177 28 H 0.279 0.721 29 H 0.137 0.863 30 H 0.127 0.873 31 H 0.405 0.595 32 H 0.087 0.913 33 H 0.083 0.917 34 H 0.068 0.932 35 H 0.077 0.923 36 H 0.079 0.921 37 H 0.075 0.925 38 H 0.092 0.908 39 H 0.097 0.903 40 H 0.117 0.883 41 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.374 -22.306 1.225 28.300 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.517 5.517 2 C -0.140 4.140 3 Si 0.732 3.268 4 H -0.199 1.199 5 H -0.208 1.208 6 H -0.183 1.183 7 C -0.464 4.464 8 H 0.124 0.876 9 O -0.121 6.121 10 C 0.100 3.900 11 C -0.226 4.226 12 C -0.085 4.085 13 C -0.051 4.051 14 N -0.303 5.303 15 C 0.293 3.707 16 O -0.386 6.386 17 C -0.168 4.168 18 H 0.143 0.857 19 C -0.139 4.139 20 C -0.162 4.162 21 C -0.160 4.160 22 C -0.193 4.193 23 C 0.261 3.739 24 F -0.169 7.169 25 F -0.178 7.178 26 C -0.114 4.114 27 C -0.197 4.197 28 H 0.089 0.911 29 H 0.155 0.845 30 H 0.145 0.855 31 H 0.242 0.758 32 H 0.106 0.894 33 H 0.101 0.899 34 H 0.087 0.913 35 H 0.096 0.904 36 H 0.098 0.902 37 H 0.094 0.906 38 H 0.110 0.890 39 H 0.115 0.885 40 H 0.135 0.865 41 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 16.501 -21.864 0.778 27.403 hybrid contribution 0.544 0.788 0.458 1.061 sum 17.045 -21.076 1.236 27.134 Atomic orbital electron populations 1.69662 1.05571 1.28471 1.48000 1.24471 0.95034 0.98827 0.95711 0.86169 0.80307 0.81409 0.78936 1.19893 1.20831 1.18330 1.20785 0.76893 0.96700 1.52030 0.87567 1.83561 1.22627 1.25632 1.80273 1.19143 0.91683 0.85563 0.93597 1.21227 1.01326 0.91260 1.08823 1.20912 0.92416 0.97888 0.97327 1.17333 0.91790 0.83541 1.12439 1.43403 1.31497 1.07926 1.47482 1.20172 0.85912 0.84875 0.79748 1.90732 1.22469 1.83606 1.41750 1.22465 1.03940 0.95449 0.94990 0.85694 1.21402 0.99498 0.92266 1.00777 1.21651 1.01160 0.96888 0.96467 1.21572 1.01441 0.97872 0.95121 1.22534 1.00455 0.92530 1.03826 1.20944 0.77099 0.88800 0.87079 1.93052 1.40219 1.95780 1.87884 1.92963 1.79405 1.67044 1.78416 1.20351 0.98185 0.90736 1.02153 1.19979 0.91930 0.97269 1.10535 0.91053 0.84530 0.85492 0.75773 0.89434 0.89861 0.91287 0.90426 0.90228 0.90587 0.88986 0.88461 0.86532 0.86000 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.80 13.96 55.48 0.77 -25.02 16 2 C 0.06 1.79 5.49 -17.52 -0.10 1.69 16 3 Si 0.91 21.87 28.62 -169.99 -4.86 17.01 16 4 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 5 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 6 H -0.26 -6.24 7.11 56.52 0.40 -5.84 16 7 C -0.39 -11.15 9.94 30.88 0.31 -10.85 16 8 H 0.11 3.14 5.43 -52.48 -0.28 2.85 16 9 O -0.22 -5.78 8.58 0.02 0.00 -5.78 16 10 C 0.15 3.61 6.65 -39.09 -0.26 3.35 16 11 C -0.21 -4.76 9.16 -39.42 -0.36 -5.12 16 12 C -0.07 -1.36 8.69 -39.42 -0.34 -1.70 16 13 C 0.04 0.75 6.30 -83.62 -0.53 0.22 16 14 N -0.66 -9.52 5.10 -9.82 -0.05 -9.57 16 15 C 0.51 7.32 6.73 -10.99 -0.07 7.25 16 16 O -0.51 -9.32 13.42 5.55 0.07 -9.25 16 17 C -0.15 -1.38 2.25 -91.77 -0.21 -1.59 16 18 H 0.13 0.83 8.14 -51.93 -0.42 0.40 16 19 C -0.10 -0.88 4.37 -26.73 -0.12 -1.00 16 20 C -0.12 -0.67 5.92 -26.73 -0.16 -0.83 16 21 C -0.12 -0.62 5.80 -26.73 -0.16 -0.78 16 22 C -0.16 -0.88 5.45 -26.75 -0.15 -1.03 16 23 C 0.30 2.74 1.62 -26.75 -0.04 2.70 16 24 F -0.19 -2.30 15.73 2.25 0.04 -2.27 16 25 F -0.20 -1.98 14.76 2.25 0.03 -1.94 16 26 C -0.09 -1.61 9.96 -39.41 -0.39 -2.01 16 27 C -0.18 -3.52 9.99 -39.42 -0.39 -3.91 16 28 H 0.28 7.55 8.31 -40.82 -0.34 7.21 16 29 H 0.14 3.30 5.63 -52.49 -0.30 3.01 16 30 H 0.13 2.66 6.22 -52.49 -0.33 2.33 16 31 H 0.41 4.73 6.82 -40.82 -0.28 4.45 16 32 H 0.09 0.80 8.10 -51.93 -0.42 0.38 16 33 H 0.08 0.87 7.76 -51.93 -0.40 0.47 16 34 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 35 H 0.08 0.37 8.14 -51.93 -0.42 -0.06 16 36 H 0.08 0.27 8.14 -51.93 -0.42 -0.15 16 37 H 0.08 0.47 7.80 -51.93 -0.41 0.07 16 38 H 0.09 0.48 8.14 -51.93 -0.42 0.05 16 39 H 0.10 0.37 8.14 -51.93 -0.42 -0.06 16 40 H 0.12 1.56 8.06 -52.48 -0.42 1.14 16 41 H 0.12 2.20 8.06 -52.49 -0.42 1.78 16 LS Contribution 340.86 15.07 5.14 5.14 Total: -1.00 -32.87 340.86 -6.76 -39.63 By element: Atomic # 1 Polarization: 10.59 SS G_CDS: -4.93 Total: 5.66 kcal Atomic # 6 Polarization: -10.64 SS G_CDS: -2.97 Total: -13.60 kcal Atomic # 7 Polarization: -35.32 SS G_CDS: 0.72 Total: -34.60 kcal Atomic # 8 Polarization: -15.10 SS G_CDS: 0.07 Total: -15.03 kcal Atomic # 9 Polarization: -4.28 SS G_CDS: 0.07 Total: -4.21 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -4.86 Total: 17.01 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -32.87 -6.76 -39.63 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000327946310.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -104.921 kcal (2) G-P(sol) polarization free energy of solvation -32.871 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.792 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.756 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.627 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.548 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds