Wall clock time and date at job start Tue Mar 31 2020 14:09:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53003 * 109.47111 * 2 1 4 4 C 1.52998 * 109.47111 * 179.97438 * 3 2 1 5 5 N 1.46496 * 109.47138 * 179.97438 * 4 3 2 6 6 C 1.36914 * 120.00120 * 269.99938 * 5 4 3 7 7 H 1.08002 * 119.99883 * 136.46128 * 6 5 4 8 8 C 1.38980 * 119.99854 * 316.46138 * 6 5 4 9 9 N 1.31414 * 119.99612 * 346.07361 * 8 6 5 10 10 Si 1.86800 * 119.99994 * 166.06935 * 8 6 5 11 11 H 1.48499 * 109.46808 * 60.00464 * 10 8 6 12 12 H 1.48498 * 109.46965 * 179.97438 * 10 8 6 13 13 H 1.48492 * 109.46986 * 300.00317 * 10 8 6 14 14 C 1.34784 * 120.00065 * 89.99787 * 5 4 3 15 15 O 1.21771 * 119.99800 * 354.44963 * 14 5 4 16 16 C 1.46218 * 119.99776 * 174.45055 * 14 5 4 17 17 S 1.76195 * 126.12783 * 352.98631 * 16 14 5 18 18 C 1.70921 * 90.41492 * 179.97438 * 17 16 14 19 19 N 1.38385 * 124.73068 * 180.02562 * 18 17 16 20 20 C 1.34776 * 120.00193 * 180.31357 * 19 18 17 21 21 C 1.50700 * 119.99961 * 179.97438 * 20 19 18 22 22 O 1.21263 * 119.99996 * 359.97438 * 20 19 18 23 23 N 1.30129 * 110.53780 * 0.34554 * 18 17 16 24 24 C 1.30844 * 117.30806 * 359.72794 * 23 18 17 25 25 C 1.50703 * 123.00474 * 180.02562 * 24 23 18 26 26 H 1.09002 * 109.47308 * 179.97438 * 1 2 3 27 27 H 1.08993 * 109.47509 * 300.00107 * 1 2 3 28 28 H 1.09001 * 109.46983 * 60.00383 * 1 2 3 29 29 H 1.09002 * 109.47389 * 240.00138 * 2 1 3 30 30 H 1.09001 * 109.46983 * 119.99617 * 2 1 3 31 31 H 1.08993 * 109.47021 * 59.99594 * 3 2 1 32 32 H 1.09001 * 109.46884 * 299.99678 * 3 2 1 33 33 H 1.09001 * 109.46983 * 299.99617 * 4 3 2 34 34 H 1.08998 * 109.47428 * 59.99392 * 4 3 2 35 35 H 0.97002 * 119.99376 * 185.02096 * 9 8 6 36 36 H 0.97006 * 119.99529 * 0.30605 * 19 18 17 37 37 H 1.08997 * 109.46939 * 89.99909 * 21 20 19 38 38 H 1.09003 * 109.46907 * 210.00230 * 21 20 19 39 39 H 1.09000 * 109.47338 * 330.00078 * 21 20 19 40 40 H 1.08998 * 109.47059 * 269.97818 * 25 24 23 41 41 H 1.09004 * 109.47169 * 29.97546 * 25 24 23 42 42 H 1.08992 * 109.46855 * 149.97695 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 7 4.0583 2.8237 0.0000 6 6 4.2870 3.4684 -1.1860 7 1 3.9653 4.4913 -1.3153 8 6 4.9331 2.8066 -2.2233 9 7 5.5635 1.6773 -1.9904 10 14 4.9052 3.5222 -3.9486 11 1 5.5322 4.8683 -3.9362 12 1 5.6619 2.6327 -4.8657 13 1 3.4999 3.6350 -4.4150 14 6 4.2824 3.4598 1.1670 15 8 3.9842 2.9244 2.2193 16 6 4.8835 4.7927 1.1694 17 16 5.5329 5.6419 -0.2312 18 6 5.9469 6.9758 0.7540 19 7 6.5546 8.1331 0.2995 20 6 6.8450 9.1258 1.1635 21 6 7.5073 10.3858 0.6687 22 8 6.5734 9.0051 2.3392 23 7 5.6172 6.7487 1.9921 24 6 5.0490 5.6012 2.2612 25 6 4.6149 5.2055 3.6490 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 1.8934 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 1.6766 1.9563 0.8899 32 1 1.6767 1.9563 -0.8900 33 1 3.9329 0.9289 0.8909 34 1 3.9337 0.9285 -0.8890 35 1 6.0752 1.2530 -2.6969 36 1 6.7717 8.2297 -0.6410 37 1 6.7439 11.1078 0.3790 38 1 8.1242 10.8077 1.4621 39 1 8.1329 10.1531 -0.1931 40 1 5.4336 4.6923 4.1533 41 1 4.3432 6.0979 4.2130 42 1 3.7539 4.5403 3.5845 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001189886708.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:09:51 Heat of formation + Delta-G solvation = -33.623538 kcal Electronic energy + Delta-G solvation = -25687.920203 eV Core-core repulsion = 21987.842881 eV Total energy + Delta-G solvation = -3700.077322 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 325.125 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.04708 -38.97829 -37.97084 -35.42741 -34.62818 -34.11124 -31.80577 -30.89830 -29.42748 -28.92015 -27.00704 -25.24200 -23.93118 -23.07826 -21.25157 -20.54110 -19.85876 -18.67053 -18.18835 -17.07176 -16.62861 -15.65897 -15.50841 -15.46985 -14.86132 -14.45578 -14.33336 -14.31610 -13.79793 -13.69015 -13.11858 -12.90702 -12.77957 -12.63083 -12.48300 -12.29024 -12.05376 -11.88387 -11.78682 -11.62430 -11.34991 -11.24223 -10.72638 -10.62132 -10.53146 -10.43941 -10.34405 -10.11036 -10.04892 -9.83254 -9.43298 -8.74234 -8.48158 -8.39787 -7.73074 -7.31871 -6.70215 -4.46160 1.15653 1.83956 2.56817 2.68379 2.93850 3.01063 3.02252 3.25917 3.51961 3.80418 4.26244 4.56217 4.63384 4.78259 4.98363 5.22908 5.27018 5.45449 5.49845 5.62752 5.66262 5.92247 6.02015 6.14581 6.21516 6.29174 6.33422 6.36195 6.38829 6.50717 6.55251 6.64983 6.66396 6.77490 6.97556 7.01491 7.04861 7.31937 7.36399 7.71144 8.07111 8.17927 8.64000 8.71848 9.27820 9.72139 10.27401 Molecular weight = 325.12amu Principal moments of inertia in cm(-1) A = 0.013575 B = 0.004499 C = 0.003580 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2062.186814 B = 6221.781601 C = 7819.837324 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.119 4.119 3 C -0.129 4.129 4 C 0.122 3.878 5 N -0.437 5.437 6 C -0.332 4.332 7 H 0.097 0.903 8 C 0.061 3.939 9 N -0.834 5.834 10 Si 0.909 3.091 11 H -0.262 1.262 12 H -0.277 1.277 13 H -0.265 1.265 14 C 0.549 3.451 15 O -0.587 6.587 16 C -0.268 4.268 17 S 0.246 5.754 18 C 0.172 3.828 19 N -0.632 5.632 20 C 0.496 3.504 21 C -0.168 4.168 22 O -0.483 6.483 23 N -0.491 5.491 24 C 0.130 3.870 25 C -0.071 4.071 26 H 0.047 0.953 27 H 0.051 0.949 28 H 0.050 0.950 29 H 0.058 0.942 30 H 0.058 0.942 31 H 0.055 0.945 32 H 0.059 0.941 33 H 0.056 0.944 34 H 0.102 0.898 35 H 0.279 0.721 36 H 0.417 0.583 37 H 0.094 0.906 38 H 0.094 0.906 39 H 0.080 0.920 40 H 0.068 0.932 41 H 0.060 0.940 42 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.414 7.171 -4.093 8.268 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.157 4.157 3 C -0.167 4.167 4 C -0.001 4.001 5 N -0.154 5.154 6 C -0.468 4.468 7 H 0.114 0.886 8 C -0.152 4.152 9 N -0.467 5.467 10 Si 0.734 3.266 11 H -0.187 1.187 12 H -0.202 1.202 13 H -0.190 1.190 14 C 0.338 3.662 15 O -0.474 6.474 16 C -0.393 4.393 17 S 0.508 5.492 18 C -0.190 4.190 19 N -0.282 5.282 20 C 0.280 3.720 21 C -0.228 4.228 22 O -0.352 6.352 23 N -0.212 5.212 24 C -0.011 4.011 25 C -0.131 4.131 26 H 0.066 0.934 27 H 0.070 0.930 28 H 0.069 0.931 29 H 0.077 0.923 30 H 0.076 0.924 31 H 0.073 0.927 32 H 0.078 0.922 33 H 0.075 0.925 34 H 0.120 0.880 35 H 0.090 0.910 36 H 0.254 0.746 37 H 0.113 0.887 38 H 0.113 0.887 39 H 0.099 0.901 40 H 0.087 0.913 41 H 0.079 0.921 42 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 0.494 7.024 -3.541 7.881 hybrid contribution 0.092 0.225 -0.707 0.747 sum 0.586 7.249 -4.248 8.422 Atomic orbital electron populations 1.21755 0.96609 1.00692 1.01520 1.21429 0.95034 0.97675 1.01592 1.21917 0.97648 0.95576 1.01595 1.21408 0.91372 0.84026 1.03329 1.43246 1.55939 1.12331 1.03917 1.19356 1.38928 0.98089 0.90455 0.88594 1.25607 0.93457 0.95552 1.00538 1.69800 1.25523 1.16618 1.34749 0.86234 0.79484 0.79685 0.81234 1.18688 1.20190 1.18956 1.17074 0.80985 0.83732 0.84410 1.90642 1.57712 1.67584 1.31416 1.25559 1.15991 1.02575 0.95212 1.85253 1.52555 1.03553 1.07801 1.25631 1.01118 0.95090 0.97208 1.42999 1.59096 1.13974 1.12156 1.21143 0.79404 0.84866 0.86625 1.21882 1.02049 0.95169 1.03686 1.90829 1.48988 1.79167 1.16244 1.66136 1.16791 1.20798 1.17496 1.20493 0.96278 0.87536 0.96744 1.20387 1.02481 1.00897 0.89289 0.93424 0.93029 0.93056 0.92285 0.92356 0.92670 0.92216 0.92529 0.88050 0.91003 0.74606 0.88720 0.88679 0.90074 0.91295 0.92080 0.88875 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.02 9.91 37.16 0.37 -1.65 16 2 C -0.12 -1.90 5.93 -26.73 -0.16 -2.06 16 3 C -0.13 -2.49 5.54 -26.73 -0.15 -2.64 16 4 C 0.12 2.73 4.95 -4.05 -0.02 2.71 16 5 N -0.44 -10.50 2.48 -116.45 -0.29 -10.78 16 6 C -0.33 -7.65 6.74 -15.01 -0.10 -7.75 16 7 H 0.10 2.15 5.78 -39.21 -0.23 1.92 16 8 C 0.06 1.36 5.09 -17.46 -0.09 1.27 16 9 N -0.83 -19.75 11.43 55.50 0.63 -19.12 16 10 Si 0.91 17.03 29.58 -169.99 -5.03 12.00 16 11 H -0.26 -4.64 7.11 56.52 0.40 -4.24 16 12 H -0.28 -5.19 7.11 56.52 0.40 -4.79 16 13 H -0.26 -4.95 7.11 56.52 0.40 -4.55 16 14 C 0.55 13.61 7.55 -13.05 -0.10 13.51 16 15 O -0.59 -15.25 14.05 5.13 0.07 -15.18 16 16 C -0.27 -6.15 6.29 -36.88 -0.23 -6.39 16 17 S 0.25 4.78 18.76 -107.50 -2.02 2.77 16 18 C 0.17 3.28 7.98 -87.54 -0.70 2.58 16 19 N -0.63 -9.13 5.38 -13.14 -0.07 -9.20 16 20 C 0.50 7.25 7.90 -10.99 -0.09 7.16 16 21 C -0.17 -1.38 10.30 36.01 0.37 -1.01 16 22 O -0.48 -9.69 15.70 5.57 0.09 -9.60 16 23 N -0.49 -10.88 8.54 -10.79 -0.09 -10.97 16 24 C 0.13 2.90 6.83 -83.51 -0.57 2.33 16 25 C -0.07 -1.44 9.63 36.01 0.35 -1.10 16 26 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 27 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 28 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 29 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 30 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 31 H 0.05 1.13 8.14 -51.93 -0.42 0.71 16 32 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 33 H 0.06 1.32 7.51 -51.93 -0.39 0.93 16 34 H 0.10 2.36 5.68 -51.93 -0.29 2.06 16 35 H 0.28 6.20 8.32 -40.82 -0.34 5.86 16 36 H 0.42 4.14 8.82 -40.82 -0.36 3.78 16 37 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 38 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 39 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 40 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 41 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 42 H 0.09 1.95 6.22 -51.93 -0.32 1.63 16 LS Contribution 361.92 15.07 5.45 5.45 Total: -1.00 -31.57 361.92 -8.17 -39.74 By element: Atomic # 1 Polarization: 13.71 SS G_CDS: -5.80 Total: 7.91 kcal Atomic # 6 Polarization: 8.10 SS G_CDS: -1.12 Total: 6.99 kcal Atomic # 7 Polarization: -50.26 SS G_CDS: 0.18 Total: -50.08 kcal Atomic # 8 Polarization: -24.94 SS G_CDS: 0.16 Total: -24.78 kcal Atomic # 14 Polarization: 17.03 SS G_CDS: -5.03 Total: 12.00 kcal Atomic # 16 Polarization: 4.78 SS G_CDS: -2.02 Total: 2.77 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -31.57 -8.17 -39.74 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001189886708.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.115 kcal (2) G-P(sol) polarization free energy of solvation -31.571 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.456 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.168 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.739 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.624 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds