Wall clock time and date at job start Tue Mar 31 2020 14:09:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53003 * 109.47111 * 2 1 4 4 C 1.52998 * 109.47111 * 179.97438 * 3 2 1 5 5 N 1.46496 * 109.47138 * 179.97438 * 4 3 2 6 6 C 1.36914 * 120.00120 * 269.99938 * 5 4 3 7 7 H 1.08002 * 119.99883 * 136.46128 * 6 5 4 8 8 C 1.38980 * 119.99854 * 316.46138 * 6 5 4 9 9 N 1.31414 * 119.99612 * 346.07361 * 8 6 5 10 10 Si 1.86800 * 119.99994 * 166.06935 * 8 6 5 11 11 H 1.48499 * 109.46808 * 60.00464 * 10 8 6 12 12 H 1.48498 * 109.46965 * 179.97438 * 10 8 6 13 13 H 1.48492 * 109.46986 * 300.00317 * 10 8 6 14 14 C 1.34784 * 120.00065 * 89.99787 * 5 4 3 15 15 O 1.21771 * 119.99800 * 354.44963 * 14 5 4 16 16 C 1.46218 * 119.99776 * 174.45055 * 14 5 4 17 17 S 1.76195 * 126.12783 * 352.98631 * 16 14 5 18 18 C 1.70921 * 90.41492 * 179.97438 * 17 16 14 19 19 N 1.38385 * 124.73068 * 180.02562 * 18 17 16 20 20 C 1.34776 * 120.00193 * 180.31357 * 19 18 17 21 21 C 1.50700 * 119.99961 * 179.97438 * 20 19 18 22 22 O 1.21263 * 119.99996 * 359.97438 * 20 19 18 23 23 N 1.30129 * 110.53780 * 0.34554 * 18 17 16 24 24 C 1.30844 * 117.30806 * 359.72794 * 23 18 17 25 25 C 1.50703 * 123.00474 * 180.02562 * 24 23 18 26 26 H 1.09002 * 109.47308 * 179.97438 * 1 2 3 27 27 H 1.08993 * 109.47509 * 300.00107 * 1 2 3 28 28 H 1.09001 * 109.46983 * 60.00383 * 1 2 3 29 29 H 1.09002 * 109.47389 * 240.00138 * 2 1 3 30 30 H 1.09001 * 109.46983 * 119.99617 * 2 1 3 31 31 H 1.08993 * 109.47021 * 59.99594 * 3 2 1 32 32 H 1.09001 * 109.46884 * 299.99678 * 3 2 1 33 33 H 1.09001 * 109.46983 * 299.99617 * 4 3 2 34 34 H 1.08998 * 109.47428 * 59.99392 * 4 3 2 35 35 H 0.97002 * 119.99376 * 185.02096 * 9 8 6 36 36 H 0.97006 * 119.99529 * 0.30605 * 19 18 17 37 37 H 1.08997 * 109.46939 * 89.99909 * 21 20 19 38 38 H 1.09003 * 109.46907 * 210.00230 * 21 20 19 39 39 H 1.09000 * 109.47338 * 330.00078 * 21 20 19 40 40 H 1.08998 * 109.47059 * 269.97818 * 25 24 23 41 41 H 1.09004 * 109.47169 * 29.97546 * 25 24 23 42 42 H 1.08992 * 109.46855 * 149.97695 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 7 4.0583 2.8237 0.0000 6 6 4.2870 3.4684 -1.1860 7 1 3.9653 4.4913 -1.3153 8 6 4.9331 2.8066 -2.2233 9 7 5.5635 1.6773 -1.9904 10 14 4.9052 3.5222 -3.9486 11 1 5.5322 4.8683 -3.9362 12 1 5.6619 2.6327 -4.8657 13 1 3.4999 3.6350 -4.4150 14 6 4.2824 3.4598 1.1670 15 8 3.9842 2.9244 2.2193 16 6 4.8835 4.7927 1.1694 17 16 5.5329 5.6419 -0.2312 18 6 5.9469 6.9758 0.7540 19 7 6.5546 8.1331 0.2995 20 6 6.8450 9.1258 1.1635 21 6 7.5073 10.3858 0.6687 22 8 6.5734 9.0051 2.3392 23 7 5.6172 6.7487 1.9921 24 6 5.0490 5.6012 2.2612 25 6 4.6149 5.2055 3.6490 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 1.8934 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 1.6766 1.9563 0.8899 32 1 1.6767 1.9563 -0.8900 33 1 3.9329 0.9289 0.8909 34 1 3.9337 0.9285 -0.8890 35 1 6.0752 1.2530 -2.6969 36 1 6.7717 8.2297 -0.6410 37 1 6.7439 11.1078 0.3790 38 1 8.1242 10.8077 1.4621 39 1 8.1329 10.1531 -0.1931 40 1 5.4336 4.6923 4.1533 41 1 4.3432 6.0979 4.2130 42 1 3.7539 4.5403 3.5845 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001189886708.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:09:50 Heat of formation + Delta-G solvation = -53.402216 kcal Electronic energy + Delta-G solvation = -25688.777871 eV Core-core repulsion = 21987.842881 eV Total energy + Delta-G solvation = -3700.934989 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 325.125 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.46814 -40.66361 -39.58709 -37.15541 -36.04257 -35.62383 -33.56453 -32.28610 -30.59798 -30.39155 -28.65195 -26.97501 -25.35003 -24.65175 -22.69994 -21.98059 -21.55483 -20.29061 -19.65790 -18.57112 -18.18976 -17.32788 -17.01825 -16.79760 -16.41076 -16.00695 -15.97607 -15.88342 -15.20256 -15.04816 -14.74544 -14.33101 -14.30261 -13.79059 -13.75810 -13.60963 -13.44576 -13.35126 -13.19559 -12.99138 -12.92538 -12.82445 -12.17800 -12.14512 -11.99165 -11.98051 -11.83000 -11.59054 -11.43918 -11.40684 -11.08516 -10.52702 -10.14446 -10.03509 -9.51552 -8.93546 -8.41871 -6.27143 -0.47391 0.28377 0.92801 1.35450 1.46836 1.51719 1.58201 1.97145 2.03587 2.23032 2.47908 2.89332 3.02522 3.39038 3.96041 4.08897 4.15877 4.24582 4.31271 4.44094 4.50140 4.61212 4.67029 4.72611 4.75931 4.86235 4.88648 4.92962 5.00616 5.06084 5.07574 5.16196 5.17720 5.26775 5.38177 5.43594 5.45635 5.56373 5.93425 6.15577 6.29120 6.85969 6.94720 7.23354 7.44621 7.90028 8.57381 Molecular weight = 325.12amu Principal moments of inertia in cm(-1) A = 0.013575 B = 0.004499 C = 0.003580 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2062.186814 B = 6221.781601 C = 7819.837324 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.115 4.115 3 C -0.116 4.116 4 C 0.124 3.876 5 N -0.443 5.443 6 C -0.353 4.353 7 H 0.103 0.897 8 C 0.030 3.970 9 N -0.868 5.868 10 Si 0.964 3.036 11 H -0.240 1.240 12 H -0.277 1.277 13 H -0.262 1.262 14 C 0.533 3.467 15 O -0.616 6.616 16 C -0.312 4.312 17 S 0.288 5.712 18 C 0.185 3.815 19 N -0.618 5.618 20 C 0.491 3.509 21 C -0.153 4.153 22 O -0.542 6.542 23 N -0.523 5.523 24 C 0.126 3.874 25 C -0.066 4.066 26 H 0.070 0.930 27 H 0.049 0.951 28 H 0.055 0.945 29 H 0.064 0.936 30 H 0.057 0.943 31 H 0.037 0.963 32 H 0.056 0.944 33 H 0.035 0.965 34 H 0.093 0.907 35 H 0.283 0.717 36 H 0.440 0.560 37 H 0.119 0.881 38 H 0.099 0.901 39 H 0.118 0.882 40 H 0.072 0.928 41 H 0.074 0.926 42 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.916 9.309 -6.522 11.403 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.153 4.153 3 C -0.155 4.155 4 C 0.001 3.999 5 N -0.160 5.160 6 C -0.487 4.487 7 H 0.119 0.881 8 C -0.180 4.180 9 N -0.501 5.501 10 Si 0.785 3.215 11 H -0.163 1.163 12 H -0.201 1.201 13 H -0.187 1.187 14 C 0.323 3.677 15 O -0.505 6.505 16 C -0.438 4.438 17 S 0.550 5.450 18 C -0.178 4.178 19 N -0.271 5.271 20 C 0.279 3.721 21 C -0.212 4.212 22 O -0.415 6.415 23 N -0.245 5.245 24 C -0.015 4.015 25 C -0.125 4.125 26 H 0.089 0.911 27 H 0.068 0.932 28 H 0.074 0.926 29 H 0.083 0.917 30 H 0.075 0.925 31 H 0.056 0.944 32 H 0.075 0.925 33 H 0.053 0.947 34 H 0.111 0.889 35 H 0.093 0.907 36 H 0.282 0.718 37 H 0.137 0.863 38 H 0.118 0.882 39 H 0.136 0.864 40 H 0.090 0.910 41 H 0.092 0.908 42 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 1.005 9.170 -6.040 11.026 hybrid contribution 0.020 -0.326 0.068 0.334 sum 1.024 8.844 -5.972 10.720 Atomic orbital electron populations 1.21712 0.94327 1.02301 1.01714 1.21406 0.96988 0.95092 1.01826 1.21784 0.95357 0.97837 1.00480 1.21393 0.93319 0.83517 1.01688 1.43481 1.55602 1.12639 1.04242 1.19611 1.39977 0.98776 0.90344 0.88066 1.26366 0.92400 0.95545 1.03652 1.69894 1.26297 1.17882 1.36012 0.85397 0.79674 0.80043 0.76419 1.16292 1.20135 1.18675 1.17428 0.81207 0.84701 0.84356 1.90591 1.59043 1.68651 1.32214 1.25494 1.18223 1.02698 0.97375 1.84727 1.51949 1.02522 1.05807 1.25848 0.99368 0.96310 0.96237 1.43237 1.57795 1.12372 1.13728 1.22448 0.77979 0.85958 0.85753 1.21938 1.02653 0.91629 1.05010 1.90816 1.51327 1.80357 1.18986 1.66241 1.18478 1.20822 1.18949 1.20784 0.95684 0.87645 0.97339 1.20330 1.02024 1.01146 0.88967 0.91104 0.93168 0.92561 0.91731 0.92461 0.94378 0.92476 0.94669 0.88866 0.90713 0.71827 0.86277 0.88216 0.86383 0.90981 0.90765 0.90116 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.71 9.91 71.98 0.71 -3.00 16 2 C -0.11 -3.67 5.93 30.59 0.18 -3.49 16 3 C -0.12 -4.63 5.54 30.59 0.17 -4.46 16 4 C 0.12 5.81 4.95 86.38 0.43 6.24 16 5 N -0.44 -22.05 2.48 -640.53 -1.59 -23.63 16 6 C -0.35 -16.37 6.74 84.08 0.57 -15.80 16 7 H 0.10 4.50 5.78 -11.35 -0.07 4.44 16 8 C 0.03 1.31 5.09 84.93 0.43 1.74 16 9 N -0.87 -41.49 11.43 21.67 0.25 -41.25 16 10 Si 0.96 33.36 29.58 68.60 2.03 35.39 16 11 H -0.24 -7.39 7.11 99.48 0.71 -6.68 16 12 H -0.28 -9.51 7.11 99.48 0.71 -8.81 16 13 H -0.26 -8.96 7.11 99.48 0.71 -8.25 16 14 C 0.53 27.63 7.55 86.31 0.65 28.28 16 15 O -0.62 -33.86 14.05 -4.57 -0.06 -33.93 16 16 C -0.31 -14.72 6.29 24.02 0.15 -14.57 16 17 S 0.29 10.96 18.76 -56.49 -1.06 9.90 16 18 C 0.19 6.86 7.98 179.27 1.43 8.29 16 19 N -0.62 -16.15 5.38 -313.87 -1.69 -17.84 16 20 C 0.49 13.10 7.90 87.66 0.69 13.79 16 21 C -0.15 -1.83 10.30 71.24 0.73 -1.10 16 22 O -0.54 -21.25 15.70 -2.98 -0.05 -21.29 16 23 N -0.52 -23.16 8.54 -188.06 -1.61 -24.77 16 24 C 0.13 5.80 6.83 42.38 0.29 6.09 16 25 C -0.07 -2.75 9.63 71.24 0.69 -2.07 16 26 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 27 H 0.05 1.31 8.14 -2.39 -0.02 1.29 16 28 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 29 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 30 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16 31 H 0.04 1.62 8.14 -2.39 -0.02 1.60 16 32 H 0.06 2.28 8.14 -2.39 -0.02 2.26 16 33 H 0.03 1.75 7.51 -2.39 -0.02 1.73 16 34 H 0.09 4.51 5.68 -2.39 -0.01 4.49 16 35 H 0.28 12.60 8.32 -92.71 -0.77 11.83 16 36 H 0.44 6.96 8.82 -92.70 -0.82 6.15 16 37 H 0.12 0.97 8.14 -2.39 -0.02 0.95 16 38 H 0.10 1.21 8.14 -2.39 -0.02 1.19 16 39 H 0.12 0.59 8.14 -2.39 -0.02 0.57 16 40 H 0.07 2.92 8.14 -2.39 -0.02 2.90 16 41 H 0.07 2.83 8.14 -2.39 -0.02 2.81 16 42 H 0.08 3.57 6.22 -2.39 -0.01 3.55 16 Total: -1.00 -72.34 361.92 3.54 -68.80 By element: Atomic # 1 Polarization: 28.48 SS G_CDS: 0.19 Total: 28.67 kcal Atomic # 6 Polarization: 12.82 SS G_CDS: 7.13 Total: 19.95 kcal Atomic # 7 Polarization: -102.85 SS G_CDS: -4.63 Total: -107.49 kcal Atomic # 8 Polarization: -55.11 SS G_CDS: -0.11 Total: -55.22 kcal Atomic # 14 Polarization: 33.36 SS G_CDS: 2.03 Total: 35.39 kcal Atomic # 16 Polarization: 10.96 SS G_CDS: -1.06 Total: 9.90 kcal Total: -72.34 3.54 -68.80 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001189886708.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.398 kcal (2) G-P(sol) polarization free energy of solvation -72.339 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.941 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.539 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.801 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.402 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds