Wall clock time and date at job start Tue Mar 31 2020 14:44:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46497 * 109.47358 * 2 1 4 4 C 1.46502 * 119.99801 * 269.99886 * 3 2 1 5 5 C 1.50693 * 109.47489 * 269.99924 * 4 3 2 6 6 H 1.07998 * 119.99887 * 0.02562 * 5 4 3 7 7 C 1.37883 * 120.00406 * 179.97438 * 5 4 3 8 8 N 1.31514 * 119.99616 * 0.02562 * 7 5 4 9 9 Si 1.86798 * 120.00172 * 179.97438 * 7 5 4 10 10 H 1.48501 * 109.46798 * 90.00305 * 9 7 5 11 11 H 1.48492 * 109.47364 * 210.00278 * 9 7 5 12 12 H 1.48505 * 109.47341 * 330.00528 * 9 7 5 13 13 C 1.34775 * 120.00405 * 90.00127 * 3 2 1 14 14 O 1.21278 * 120.00164 * 180.02562 * 13 3 2 15 15 C 1.50696 * 119.99612 * 359.97438 * 13 3 2 16 16 S 1.81408 * 109.47133 * 180.02562 * 15 13 3 17 17 C 1.81398 * 103.00267 * 180.02562 * 16 15 13 18 18 H 1.09001 * 109.46769 * 304.99886 * 17 16 15 19 19 C 1.52995 * 109.46973 * 64.99781 * 17 16 15 20 20 C 1.50696 * 109.46927 * 184.99947 * 17 16 15 21 21 C 1.38248 * 119.97128 * 119.99777 * 20 17 16 22 22 C 1.38196 * 120.02483 * 179.97438 * 21 20 17 23 23 C 1.38458 * 119.97492 * 0.02562 * 22 21 20 24 24 F 1.35104 * 120.02786 * 179.97438 * 23 22 21 25 25 C 1.38465 * 119.94675 * 0.24873 * 23 22 21 26 26 C 1.38196 * 119.97501 * 359.51590 * 25 23 22 27 27 H 1.08999 * 109.47112 * 59.99973 * 1 2 3 28 28 H 1.09002 * 109.47346 * 180.02562 * 1 2 3 29 29 H 1.08996 * 109.46913 * 299.99994 * 1 2 3 30 30 H 1.09001 * 109.47503 * 239.99620 * 2 1 3 31 31 H 1.08999 * 109.47112 * 120.00027 * 2 1 3 32 32 H 1.09005 * 109.47057 * 30.00379 * 4 3 2 33 33 H 1.08999 * 109.46974 * 149.99632 * 4 3 2 34 34 H 0.97005 * 119.99773 * 179.97438 * 8 7 5 35 35 H 1.08997 * 109.47008 * 60.00755 * 15 13 3 36 36 H 1.08994 * 109.47753 * 300.00558 * 15 13 3 37 37 H 1.09001 * 109.46818 * 179.97438 * 19 17 16 38 38 H 1.09001 * 109.47810 * 299.99913 * 19 17 16 39 39 H 1.09001 * 109.47287 * 60.00422 * 19 17 16 40 40 H 1.08001 * 119.98881 * 0.02562 * 21 20 17 41 41 H 1.07996 * 120.01603 * 179.97438 * 22 21 20 42 42 H 1.08007 * 120.01064 * 179.75151 * 25 23 22 43 43 H 1.07993 * 119.98776 * 180.24915 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2625 2.0717 -1.2688 5 6 3.6857 1.8349 -1.7038 6 1 4.3426 1.2301 -1.0963 7 6 4.1491 2.3895 -2.8781 8 7 3.3491 3.1255 -3.6182 9 14 5.9135 2.0965 -3.4170 10 1 5.9774 0.8751 -4.2592 11 1 6.3921 3.2636 -4.2004 12 1 6.7736 1.9177 -2.2197 13 6 2.2430 2.0166 1.1671 14 8 2.6469 3.1601 1.1671 15 6 1.9913 1.3064 2.4722 16 16 2.3838 2.4180 3.8510 17 6 2.0245 1.4014 5.3098 18 1 1.0009 1.0312 5.2515 19 6 2.9929 0.2179 5.3577 20 6 2.1872 2.2345 6.5550 21 6 1.1147 2.4189 7.4076 22 6 1.2629 3.1822 8.5501 23 6 2.4859 3.7627 8.8404 24 9 2.6318 4.5096 9.9568 25 6 3.5578 3.5820 7.9827 26 6 3.4086 2.8143 6.8434 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.8934 -0.5139 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 1.5816 1.6876 -2.0284 33 1 2.0955 3.1409 -1.1385 34 1 3.6751 3.5160 -4.4442 35 1 2.6212 0.4187 2.5302 36 1 0.9433 1.0125 2.5298 37 1 2.7773 -0.3927 6.2345 38 1 2.8752 -0.3847 4.4571 39 1 4.0165 0.5881 5.4160 40 1 0.1610 1.9656 7.1812 41 1 0.4249 3.3265 9.2158 42 1 4.5112 4.0377 8.2061 43 1 4.2456 2.6698 6.1764 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000062696708.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:44:43 Heat of formation + Delta-G solvation = -62.567771 kcal Electronic energy + Delta-G solvation = -24312.755143 eV Core-core repulsion = 20591.502743 eV Total energy + Delta-G solvation = -3721.252399 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 325.125 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -49.13315 -39.53192 -39.03879 -35.37422 -34.33471 -32.87616 -31.44512 -30.36027 -30.01149 -29.08352 -26.65891 -24.36050 -23.29344 -23.09912 -22.67764 -21.42661 -18.61945 -17.94186 -16.93922 -16.71099 -16.55377 -16.33338 -15.83479 -15.59110 -15.24401 -14.98544 -14.63306 -14.26598 -13.96023 -13.84687 -13.76357 -13.47262 -13.37523 -13.12491 -12.89430 -12.75729 -12.17980 -12.07412 -11.99910 -11.85152 -11.65891 -11.37855 -11.27148 -11.17501 -10.93715 -10.80005 -10.56171 -10.15422 -9.77462 -9.66564 -9.38272 -9.06473 -8.78925 -8.45250 -7.76283 -7.54137 -6.06210 -4.11046 0.69131 0.95382 1.66029 2.55533 3.27986 3.29579 3.34689 3.36428 3.41291 3.87095 3.98329 4.23391 4.40365 4.43343 4.60699 4.72108 4.90450 4.92738 5.01707 5.10985 5.13687 5.17510 5.28481 5.32341 5.40528 5.53240 5.56024 5.62061 5.69861 5.71378 5.82825 5.86266 5.94955 5.96452 6.16210 6.20826 6.41197 6.58648 6.99344 7.40517 7.48329 7.89671 8.20403 8.31564 8.85155 9.00476 9.54041 11.01959 Molecular weight = 325.13amu Principal moments of inertia in cm(-1) A = 0.018584 B = 0.002552 C = 0.002382 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1506.312906 B =10971.091782 C =11752.960422 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.106 3.894 3 N -0.593 5.593 4 C 0.248 3.752 5 C -0.527 4.527 6 H 0.057 0.943 7 C 0.061 3.939 8 N -0.894 5.894 9 Si 0.898 3.102 10 H -0.280 1.280 11 H -0.285 1.285 12 H -0.274 1.274 13 C 0.521 3.479 14 O -0.520 6.520 15 C -0.127 4.127 16 S -0.164 6.164 17 C -0.044 4.044 18 H 0.094 0.906 19 C -0.145 4.145 20 C -0.070 4.070 21 C -0.077 4.077 22 C -0.154 4.154 23 C 0.096 3.904 24 F -0.142 7.142 25 C -0.151 4.151 26 C -0.071 4.071 27 H 0.062 0.938 28 H 0.060 0.940 29 H 0.049 0.951 30 H 0.084 0.916 31 H 0.062 0.938 32 H 0.034 0.966 33 H 0.044 0.956 34 H 0.264 0.736 35 H 0.104 0.896 36 H 0.102 0.898 37 H 0.064 0.936 38 H 0.061 0.939 39 H 0.071 0.929 40 H 0.133 0.867 41 H 0.136 0.864 42 H 0.137 0.863 43 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.885 -7.920 22.110 24.212 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.019 4.019 3 N -0.325 5.325 4 C 0.129 3.871 5 C -0.566 4.566 6 H 0.075 0.925 7 C -0.141 4.141 8 N -0.533 5.533 9 Si 0.726 3.274 10 H -0.207 1.207 11 H -0.211 1.211 12 H -0.198 1.198 13 C 0.305 3.695 14 O -0.396 6.396 15 C -0.279 4.279 16 S 0.065 5.935 17 C -0.172 4.172 18 H 0.112 0.888 19 C -0.204 4.204 20 C -0.072 4.072 21 C -0.097 4.097 22 C -0.173 4.173 23 C 0.077 3.923 24 F -0.120 7.120 25 C -0.170 4.170 26 C -0.090 4.090 27 H 0.081 0.919 28 H 0.079 0.921 29 H 0.068 0.932 30 H 0.103 0.897 31 H 0.081 0.919 32 H 0.051 0.949 33 H 0.062 0.938 34 H 0.073 0.927 35 H 0.122 0.878 36 H 0.120 0.880 37 H 0.083 0.917 38 H 0.080 0.920 39 H 0.090 0.910 40 H 0.151 0.849 41 H 0.154 0.846 42 H 0.155 0.845 43 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -5.306 -6.124 21.845 23.299 hybrid contribution 0.425 -1.405 -0.242 1.488 sum -4.881 -7.529 21.603 23.393 Atomic orbital electron populations 1.22227 0.96705 1.01464 1.02413 1.21439 0.93571 0.84163 1.02712 1.48197 1.63719 1.13265 1.07367 1.19306 0.96390 0.93687 0.77763 1.21413 0.96868 1.32023 1.06276 0.92463 1.24936 0.97894 0.94867 0.96389 1.69932 1.35732 1.33338 1.14321 0.86492 0.84642 0.77673 0.78606 1.20660 1.21052 1.19841 1.19369 0.79250 0.86819 0.84026 1.90722 1.44987 1.17496 1.86445 1.23727 1.05568 1.02228 0.96354 1.87766 1.88449 1.21163 0.96124 1.22185 1.03209 0.97482 0.94334 0.88798 1.22119 0.99574 0.96362 1.02325 1.19289 0.94094 0.98977 0.94824 1.20881 0.98475 0.97269 0.93082 1.21089 0.96564 1.00228 0.99378 1.17764 0.95176 0.94719 0.84677 1.91500 1.96405 1.74249 1.49866 1.21164 0.98845 1.01648 0.95315 1.20991 0.97658 0.94712 0.95634 0.91855 0.92095 0.93157 0.89712 0.91918 0.94852 0.93784 0.92680 0.87824 0.88000 0.91747 0.91967 0.90977 0.84878 0.84644 0.84510 0.84241 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.13 10.24 37.16 0.38 -1.75 16 2 C 0.11 1.60 5.93 -4.05 -0.02 1.57 16 3 N -0.59 -12.20 2.46 -175.07 -0.43 -12.63 16 4 C 0.25 6.39 5.16 -5.20 -0.03 6.36 16 5 C -0.53 -14.82 9.39 -34.44 -0.32 -15.14 16 6 H 0.06 1.61 7.81 -52.49 -0.41 1.20 16 7 C 0.06 1.74 5.46 -17.82 -0.10 1.65 16 8 N -0.89 -26.50 13.29 55.43 0.74 -25.77 16 9 Si 0.90 21.80 29.54 -169.99 -5.02 16.78 16 10 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 11 H -0.28 -6.88 7.11 56.52 0.40 -6.47 16 12 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 13 C 0.52 10.70 7.69 -10.99 -0.08 10.62 16 14 O -0.52 -13.23 15.44 5.56 0.09 -13.15 16 15 C -0.13 -1.84 4.67 36.00 0.17 -1.67 16 16 S -0.16 -2.40 19.90 -107.50 -2.14 -4.54 16 17 C -0.04 -0.43 3.01 -27.89 -0.08 -0.51 16 18 H 0.09 0.78 7.87 -51.92 -0.41 0.37 16 19 C -0.14 -1.21 8.91 37.15 0.33 -0.88 16 20 C -0.07 -0.69 4.78 -104.62 -0.50 -1.19 16 21 C -0.08 -0.66 9.67 -39.59 -0.38 -1.04 16 22 C -0.15 -1.34 10.03 -39.52 -0.40 -1.73 16 23 C 0.10 0.96 7.30 -39.42 -0.29 0.67 16 24 F -0.14 -1.51 17.27 2.25 0.04 -1.47 16 25 C -0.15 -1.45 10.03 -39.51 -0.40 -1.85 16 26 C -0.07 -0.71 8.77 -39.59 -0.35 -1.05 16 27 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 28 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.05 0.60 7.22 -51.93 -0.37 0.22 16 30 H 0.08 1.34 8.07 -51.93 -0.42 0.92 16 31 H 0.06 0.77 6.44 -51.93 -0.33 0.43 16 32 H 0.03 0.87 8.07 -51.93 -0.42 0.45 16 33 H 0.04 1.29 7.42 -51.93 -0.39 0.91 16 34 H 0.26 7.37 8.31 -40.82 -0.34 7.04 16 35 H 0.10 1.28 6.40 -51.93 -0.33 0.95 16 36 H 0.10 1.21 7.18 -51.93 -0.37 0.84 16 37 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 38 H 0.06 0.50 6.92 -51.93 -0.36 0.14 16 39 H 0.07 0.63 7.39 -51.93 -0.38 0.25 16 40 H 0.13 0.84 7.94 -52.49 -0.42 0.43 16 41 H 0.14 0.91 8.06 -52.49 -0.42 0.48 16 42 H 0.14 1.10 8.06 -52.48 -0.42 0.67 16 43 H 0.14 1.35 7.58 -52.49 -0.40 0.95 16 LS Contribution 375.43 15.07 5.66 5.66 Total: -1.00 -33.61 375.43 -9.41 -43.02 By element: Atomic # 1 Polarization: 4.30 SS G_CDS: -6.26 Total: -1.96 kcal Atomic # 6 Polarization: -3.87 SS G_CDS: -2.07 Total: -5.94 kcal Atomic # 7 Polarization: -38.70 SS G_CDS: 0.31 Total: -38.40 kcal Atomic # 8 Polarization: -13.23 SS G_CDS: 0.09 Total: -13.15 kcal Atomic # 9 Polarization: -1.51 SS G_CDS: 0.04 Total: -1.47 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.02 Total: 16.78 kcal Atomic # 16 Polarization: -2.40 SS G_CDS: -2.14 Total: -4.54 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -33.61 -9.41 -43.02 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000062696708.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.551 kcal (2) G-P(sol) polarization free energy of solvation -33.611 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.162 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.406 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.017 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.568 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds