Wall clock time and date at job start Tue Mar 31 2020 14:44:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46497 * 109.47358 * 2 1 4 4 C 1.46502 * 119.99801 * 269.99886 * 3 2 1 5 5 C 1.50693 * 109.47489 * 269.99924 * 4 3 2 6 6 H 1.07998 * 119.99887 * 0.02562 * 5 4 3 7 7 C 1.37883 * 120.00406 * 179.97438 * 5 4 3 8 8 N 1.31514 * 119.99616 * 0.02562 * 7 5 4 9 9 Si 1.86798 * 120.00172 * 179.97438 * 7 5 4 10 10 H 1.48501 * 109.46798 * 90.00305 * 9 7 5 11 11 H 1.48492 * 109.47364 * 210.00278 * 9 7 5 12 12 H 1.48505 * 109.47341 * 330.00528 * 9 7 5 13 13 C 1.34775 * 120.00405 * 90.00127 * 3 2 1 14 14 O 1.21278 * 120.00164 * 180.02562 * 13 3 2 15 15 C 1.50696 * 119.99612 * 359.97438 * 13 3 2 16 16 S 1.81408 * 109.47133 * 180.02562 * 15 13 3 17 17 C 1.81398 * 103.00267 * 180.02562 * 16 15 13 18 18 H 1.09001 * 109.46769 * 304.99886 * 17 16 15 19 19 C 1.52995 * 109.46973 * 64.99781 * 17 16 15 20 20 C 1.50696 * 109.46927 * 184.99947 * 17 16 15 21 21 C 1.38248 * 119.97128 * 119.99777 * 20 17 16 22 22 C 1.38196 * 120.02483 * 179.97438 * 21 20 17 23 23 C 1.38458 * 119.97492 * 0.02562 * 22 21 20 24 24 F 1.35104 * 120.02786 * 179.97438 * 23 22 21 25 25 C 1.38465 * 119.94675 * 0.24873 * 23 22 21 26 26 C 1.38196 * 119.97501 * 359.51590 * 25 23 22 27 27 H 1.08999 * 109.47112 * 59.99973 * 1 2 3 28 28 H 1.09002 * 109.47346 * 180.02562 * 1 2 3 29 29 H 1.08996 * 109.46913 * 299.99994 * 1 2 3 30 30 H 1.09001 * 109.47503 * 239.99620 * 2 1 3 31 31 H 1.08999 * 109.47112 * 120.00027 * 2 1 3 32 32 H 1.09005 * 109.47057 * 30.00379 * 4 3 2 33 33 H 1.08999 * 109.46974 * 149.99632 * 4 3 2 34 34 H 0.97005 * 119.99773 * 179.97438 * 8 7 5 35 35 H 1.08997 * 109.47008 * 60.00755 * 15 13 3 36 36 H 1.08994 * 109.47753 * 300.00558 * 15 13 3 37 37 H 1.09001 * 109.46818 * 179.97438 * 19 17 16 38 38 H 1.09001 * 109.47810 * 299.99913 * 19 17 16 39 39 H 1.09001 * 109.47287 * 60.00422 * 19 17 16 40 40 H 1.08001 * 119.98881 * 0.02562 * 21 20 17 41 41 H 1.07996 * 120.01603 * 179.97438 * 22 21 20 42 42 H 1.08007 * 120.01064 * 179.75151 * 25 23 22 43 43 H 1.07993 * 119.98776 * 180.24915 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2625 2.0717 -1.2688 5 6 3.6857 1.8349 -1.7038 6 1 4.3426 1.2301 -1.0963 7 6 4.1491 2.3895 -2.8781 8 7 3.3491 3.1255 -3.6182 9 14 5.9135 2.0965 -3.4170 10 1 5.9774 0.8751 -4.2592 11 1 6.3921 3.2636 -4.2004 12 1 6.7736 1.9177 -2.2197 13 6 2.2430 2.0166 1.1671 14 8 2.6469 3.1601 1.1671 15 6 1.9913 1.3064 2.4722 16 16 2.3838 2.4180 3.8510 17 6 2.0245 1.4014 5.3098 18 1 1.0009 1.0312 5.2515 19 6 2.9929 0.2179 5.3577 20 6 2.1872 2.2345 6.5550 21 6 1.1147 2.4189 7.4076 22 6 1.2629 3.1822 8.5501 23 6 2.4859 3.7627 8.8404 24 9 2.6318 4.5096 9.9568 25 6 3.5578 3.5820 7.9827 26 6 3.4086 2.8143 6.8434 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.8934 -0.5139 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 1.5816 1.6876 -2.0284 33 1 2.0955 3.1409 -1.1385 34 1 3.6751 3.5160 -4.4442 35 1 2.6212 0.4187 2.5302 36 1 0.9433 1.0125 2.5298 37 1 2.7773 -0.3927 6.2345 38 1 2.8752 -0.3847 4.4571 39 1 4.0165 0.5881 5.4160 40 1 0.1610 1.9656 7.1812 41 1 0.4249 3.3265 9.2158 42 1 4.5112 4.0377 8.2061 43 1 4.2456 2.6698 6.1764 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000062696708.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:44:42 Heat of formation + Delta-G solvation = -80.992350 kcal Electronic energy + Delta-G solvation = -24313.554092 eV Core-core repulsion = 20591.502743 eV Total energy + Delta-G solvation = -3722.051349 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 325.125 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -49.91233 -40.67682 -40.21516 -37.00377 -35.07327 -34.92566 -32.13217 -31.90233 -31.21452 -29.91680 -28.52061 -25.06864 -24.90871 -24.12606 -23.96258 -22.19103 -20.13215 -18.71010 -18.64201 -18.06971 -17.84420 -17.48731 -16.92063 -16.60874 -16.52993 -16.21914 -16.01239 -15.31277 -14.98793 -14.77200 -14.62989 -14.60900 -14.44423 -14.41681 -13.92449 -13.81081 -13.58283 -13.37926 -13.22510 -13.07534 -12.86810 -12.68834 -12.63110 -12.45442 -12.19159 -12.07400 -11.94031 -11.90309 -11.72933 -10.74652 -10.69648 -10.64622 -10.07100 -9.54231 -9.48867 -8.65739 -8.23345 -6.38075 -0.10588 0.26619 0.69597 1.35673 1.39240 1.49286 1.60466 1.74915 2.29279 2.43899 2.64371 3.06463 3.26714 3.51251 3.62083 3.73147 3.95751 4.02648 4.06095 4.09409 4.21975 4.29098 4.36902 4.42903 4.46768 4.63307 4.76307 4.88497 4.92528 4.97577 4.98129 5.01428 5.04532 5.14640 5.20837 5.22784 5.28173 5.39338 5.50573 5.56212 5.82841 5.89003 6.04908 6.66491 6.74527 7.26054 7.42287 8.83849 Molecular weight = 325.13amu Principal moments of inertia in cm(-1) A = 0.018584 B = 0.002552 C = 0.002382 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1506.312906 B =10971.091782 C =11752.960422 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.097 3.903 3 N -0.598 5.598 4 C 0.263 3.737 5 C -0.542 4.542 6 H 0.054 0.946 7 C 0.007 3.993 8 N -0.929 5.929 9 Si 0.968 3.032 10 H -0.262 1.262 11 H -0.282 1.282 12 H -0.273 1.273 13 C 0.509 3.491 14 O -0.582 6.582 15 C -0.103 4.103 16 S -0.241 6.241 17 C -0.018 4.018 18 H 0.118 0.882 19 C -0.145 4.145 20 C -0.081 4.081 21 C -0.073 4.073 22 C -0.153 4.153 23 C 0.080 3.920 24 F -0.149 7.149 25 C -0.160 4.160 26 C -0.081 4.081 27 H 0.037 0.963 28 H 0.098 0.902 29 H 0.061 0.939 30 H 0.074 0.926 31 H 0.103 0.897 32 H 0.025 0.975 33 H -0.006 1.006 34 H 0.267 0.733 35 H 0.132 0.868 36 H 0.136 0.864 37 H 0.084 0.916 38 H 0.069 0.931 39 H 0.061 0.939 40 H 0.162 0.838 41 H 0.157 0.843 42 H 0.144 0.856 43 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.538 -10.824 23.741 26.899 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.025 4.025 3 N -0.330 5.330 4 C 0.142 3.858 5 C -0.580 4.580 6 H 0.072 0.928 7 C -0.192 4.192 8 N -0.569 5.569 9 Si 0.792 3.208 10 H -0.186 1.186 11 H -0.208 1.208 12 H -0.198 1.198 13 C 0.297 3.703 14 O -0.463 6.463 15 C -0.253 4.253 16 S -0.012 6.012 17 C -0.146 4.146 18 H 0.137 0.863 19 C -0.203 4.203 20 C -0.083 4.083 21 C -0.093 4.093 22 C -0.172 4.172 23 C 0.060 3.940 24 F -0.128 7.128 25 C -0.179 4.179 26 C -0.101 4.101 27 H 0.056 0.944 28 H 0.116 0.884 29 H 0.080 0.920 30 H 0.092 0.908 31 H 0.121 0.879 32 H 0.043 0.957 33 H 0.013 0.987 34 H 0.076 0.924 35 H 0.150 0.850 36 H 0.154 0.846 37 H 0.103 0.897 38 H 0.088 0.912 39 H 0.080 0.920 40 H 0.179 0.821 41 H 0.174 0.826 42 H 0.162 0.838 43 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -5.983 -9.087 23.486 25.883 hybrid contribution 0.585 -0.486 -0.671 1.014 sum -5.397 -9.572 22.815 25.324 Atomic orbital electron populations 1.22165 0.94453 1.03650 1.01727 1.21811 0.95401 0.81047 1.04201 1.48209 1.63737 1.15241 1.05807 1.18714 0.95403 0.91459 0.80240 1.21694 0.97846 1.32014 1.06469 0.92796 1.25870 1.02414 0.94458 0.96480 1.70055 1.37823 1.34193 1.14804 0.85415 0.78971 0.78215 0.78222 1.18634 1.20773 1.19755 1.20398 0.77741 0.86392 0.85816 1.90690 1.47571 1.20428 1.87601 1.23517 1.08112 1.01573 0.92137 1.88122 1.89140 1.24462 0.99452 1.22203 1.04852 0.96597 0.90933 0.86342 1.22129 0.98665 0.95922 1.03628 1.19440 0.94331 0.99391 0.95144 1.21186 0.99091 0.96583 0.92391 1.21376 0.96585 0.99461 0.99736 1.18012 0.95990 0.95263 0.84691 1.91479 1.96505 1.74551 1.50246 1.21298 0.99409 1.01805 0.95370 1.21051 0.98081 0.95231 0.95725 0.94401 0.88361 0.92043 0.90779 0.87855 0.95746 0.98738 0.92413 0.85027 0.84590 0.89706 0.91159 0.91997 0.82090 0.82556 0.83796 0.84728 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.64 10.24 71.98 0.74 -2.90 16 2 C 0.10 2.75 5.93 86.38 0.51 3.26 16 3 N -0.60 -24.79 2.46 -826.19 -2.03 -26.82 16 4 C 0.26 14.24 5.16 85.63 0.44 14.68 16 5 C -0.54 -31.30 9.39 25.60 0.24 -31.06 16 6 H 0.05 3.07 7.81 -2.91 -0.02 3.05 16 7 C 0.01 0.39 5.46 84.66 0.46 0.85 16 8 N -0.93 -56.67 13.29 21.45 0.28 -56.38 16 9 Si 0.97 45.13 29.54 68.60 2.03 47.16 16 10 H -0.26 -11.35 7.11 99.48 0.71 -10.64 16 11 H -0.28 -12.96 7.11 99.48 0.71 -12.26 16 12 H -0.27 -12.58 7.11 99.48 0.71 -11.88 16 13 C 0.51 21.03 7.69 87.66 0.67 21.70 16 14 O -0.58 -31.03 15.44 -3.02 -0.05 -31.07 16 15 C -0.10 -2.73 4.67 71.23 0.33 -2.39 16 16 S -0.24 -6.80 19.90 -56.49 -1.12 -7.92 16 17 C -0.02 -0.29 3.01 29.84 0.09 -0.21 16 18 H 0.12 1.41 7.87 -2.39 -0.02 1.39 16 19 C -0.14 -1.94 8.91 71.98 0.64 -1.29 16 20 C -0.08 -1.42 4.78 -19.86 -0.09 -1.51 16 21 C -0.07 -1.03 9.67 22.26 0.22 -0.81 16 22 C -0.15 -2.32 10.03 22.31 0.22 -2.10 16 23 C 0.08 1.52 7.30 22.38 0.16 1.69 16 24 F -0.15 -3.09 17.27 44.97 0.78 -2.32 16 25 C -0.16 -3.03 10.03 22.31 0.22 -2.80 16 26 C -0.08 -1.58 8.77 22.26 0.20 -1.38 16 27 H 0.04 1.04 8.14 -2.39 -0.02 1.02 16 28 H 0.10 1.51 8.14 -2.39 -0.02 1.49 16 29 H 0.06 1.25 7.22 -2.39 -0.02 1.23 16 30 H 0.07 2.25 8.07 -2.39 -0.02 2.23 16 31 H 0.10 2.08 6.44 -2.39 -0.02 2.07 16 32 H 0.02 1.34 8.07 -2.38 -0.02 1.32 16 33 H -0.01 -0.35 7.42 -2.39 -0.02 -0.37 16 34 H 0.27 15.26 8.31 -92.70 -0.77 14.49 16 35 H 0.13 2.74 6.40 -2.39 -0.02 2.72 16 36 H 0.14 2.66 7.18 -2.39 -0.02 2.64 16 37 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 38 H 0.07 0.84 6.92 -2.39 -0.02 0.82 16 39 H 0.06 0.97 7.39 -2.39 -0.02 0.95 16 40 H 0.16 1.33 7.94 -2.91 -0.02 1.30 16 41 H 0.16 1.65 8.06 -2.91 -0.02 1.62 16 42 H 0.14 2.34 8.06 -2.91 -0.02 2.32 16 43 H 0.13 2.65 7.58 -2.91 -0.02 2.63 16 Total: -1.00 -78.61 375.43 5.95 -72.66 By element: Atomic # 1 Polarization: 7.98 SS G_CDS: 1.00 Total: 8.98 kcal Atomic # 6 Polarization: -9.34 SS G_CDS: 5.06 Total: -4.28 kcal Atomic # 7 Polarization: -81.46 SS G_CDS: -1.74 Total: -83.20 kcal Atomic # 8 Polarization: -31.03 SS G_CDS: -0.05 Total: -31.07 kcal Atomic # 9 Polarization: -3.09 SS G_CDS: 0.78 Total: -2.32 kcal Atomic # 14 Polarization: 45.13 SS G_CDS: 2.03 Total: 47.16 kcal Atomic # 16 Polarization: -6.80 SS G_CDS: -1.12 Total: -7.92 kcal Total: -78.61 5.95 -72.66 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000062696708.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.329 kcal (2) G-P(sol) polarization free energy of solvation -78.612 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.941 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.949 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.663 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.992 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds