Wall clock time and date at job start Tue Mar 31 2020 14:05:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.50697 * 109.47466 * 239.99773 * 2 1 3 5 5 H 1.07999 * 120.00055 * 240.00165 * 4 2 1 6 6 C 1.37878 * 119.99687 * 60.00188 * 4 2 1 7 7 N 1.31511 * 120.00458 * 359.97438 * 6 4 2 8 8 Si 1.86805 * 119.99926 * 180.02562 * 6 4 2 9 9 H 1.48506 * 109.46872 * 59.99743 * 8 6 4 10 10 H 1.48503 * 109.47008 * 179.97438 * 8 6 4 11 11 H 1.48494 * 109.46914 * 299.99916 * 8 6 4 12 12 N 1.46497 * 109.47188 * 119.99573 * 2 1 3 13 13 C 1.46509 * 119.99920 * 60.00125 * 12 2 1 14 14 C 1.34776 * 120.00710 * 240.00300 * 12 2 1 15 15 O 1.21283 * 119.99682 * 359.97438 * 14 12 2 16 16 C 1.50699 * 120.00475 * 180.02562 * 14 12 2 17 17 C 1.53003 * 109.47230 * 179.97438 * 16 14 12 18 18 H 1.09002 * 109.46872 * 305.00170 * 17 16 14 19 19 N 1.46496 * 109.46770 * 65.00089 * 17 16 14 20 20 C 1.34778 * 119.99944 * 205.00089 * 19 17 16 21 21 N 1.34778 * 120.00135 * 180.02562 * 20 19 17 22 22 O 1.21591 * 120.00148 * 359.97438 * 20 19 17 23 23 C 1.50693 * 109.47201 * 185.00014 * 17 16 14 24 24 C 1.33394 * 125.20530 * 100.00001 * 23 17 16 25 25 C 1.38418 * 114.92077 * 179.97438 * 24 23 17 26 26 C 1.33391 * 114.92464 * 0.02562 * 25 24 23 27 27 S 1.75884 * 125.20220 * 279.69673 * 23 17 16 28 28 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.46832 * 60.00191 * 1 2 3 30 30 H 1.09004 * 109.47261 * 300.00172 * 1 2 3 31 31 H 0.96999 * 120.00480 * 179.97438 * 7 6 4 32 32 H 1.09003 * 109.46975 * 89.99812 * 13 12 2 33 33 H 1.08995 * 109.47277 * 209.99863 * 13 12 2 34 34 H 1.09003 * 109.46743 * 330.00349 * 13 12 2 35 35 H 1.08994 * 109.46908 * 299.99876 * 16 14 12 36 36 H 1.09006 * 109.46757 * 60.00028 * 16 14 12 37 37 H 0.96995 * 120.00436 * 25.00063 * 19 17 16 38 38 H 0.96998 * 120.00186 * 359.97438 * 21 20 19 39 39 H 0.96999 * 120.00283 * 180.02562 * 21 20 19 40 40 H 1.08000 * 122.53708 * 0.02562 * 24 23 17 41 41 H 1.08006 * 122.53654 * 180.02562 * 25 24 23 42 42 H 1.07994 * 125.20084 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1312 6 6 1.6993 -0.2393 -2.4827 7 7 0.9428 0.8296 -2.6034 8 14 2.3215 -1.1204 -4.0079 9 1 1.8259 -2.5203 -4.0076 10 1 1.8261 -0.4206 -5.2204 11 1 3.8064 -1.1209 -4.0080 12 7 2.0183 -0.6905 1.1962 13 6 1.6644 -2.0932 1.4281 14 6 2.7931 -0.0356 2.0834 15 8 3.0865 1.1255 1.8913 16 6 3.2959 -0.7461 3.3136 17 6 4.1463 0.2155 4.1462 18 1 4.9426 0.6266 3.5257 19 7 3.3040 1.3053 4.6451 20 6 3.8550 2.4963 4.9525 21 7 3.0801 3.4988 5.4120 22 8 5.0512 2.6661 4.8160 23 6 4.7493 -0.5269 5.3107 24 6 6.0000 -0.9877 5.3645 25 6 6.3313 -1.6395 6.5398 26 6 5.3497 -1.7086 7.4403 27 16 3.9140 -0.9117 6.8100 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 0.5139 0.8900 31 1 0.7089 1.1612 -3.4844 32 1 2.4157 -2.7377 0.9718 33 1 1.6238 -2.2851 2.5002 34 1 0.6904 -2.3002 0.9847 35 1 2.4484 -1.0890 3.9070 36 1 3.9017 -1.6022 3.0165 37 1 2.3498 1.1698 4.7543 38 1 2.1259 3.3633 5.5212 39 1 3.4766 4.3561 5.6328 40 1 6.7011 -0.8610 4.5529 41 1 7.3106 -2.0603 6.7145 42 1 5.4262 -2.1782 8.4098 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000264090621.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:05:37 Heat of formation + Delta-G solvation = -29.180206 kcal Electronic energy + Delta-G solvation = -25747.630652 eV Core-core repulsion = 22047.746007 eV Total energy + Delta-G solvation = -3699.884644 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 325.125 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.05650 -38.93582 -37.85589 -35.68123 -34.83526 -33.55025 -32.89671 -30.90212 -29.75834 -28.37131 -26.14800 -25.24890 -24.78027 -22.79941 -21.18528 -20.75720 -19.45048 -18.44530 -18.07360 -17.66397 -16.85221 -16.52164 -16.02592 -15.55738 -15.35513 -15.12771 -14.72634 -14.37932 -14.26651 -13.85622 -13.28153 -13.06891 -12.74489 -12.70207 -12.62047 -12.39416 -12.20994 -11.83064 -11.74524 -11.53980 -11.27185 -11.06354 -10.83227 -10.81570 -10.71113 -10.27793 -10.17772 -10.11196 -9.56086 -9.24994 -9.13687 -8.92276 -8.67356 -8.50058 -8.43411 -7.61075 -6.08465 -4.16530 0.92242 1.56164 1.94936 2.67158 3.04720 3.27218 3.31892 3.32746 3.37443 3.43538 3.87660 4.38408 4.56584 4.73957 4.82964 4.97234 5.20297 5.22132 5.29668 5.44982 5.53282 5.61644 5.73574 5.89758 6.02911 6.06010 6.23740 6.26947 6.37410 6.59106 6.71936 6.77561 6.79198 7.01692 7.02354 7.39784 7.49591 7.69772 7.99148 8.06901 8.18046 8.50346 8.79664 8.81768 9.02757 9.50236 10.96766 Molecular weight = 325.12amu Principal moments of inertia in cm(-1) A = 0.016486 B = 0.003376 C = 0.003114 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1697.964622 B = 8290.976708 C = 8988.533889 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.259 3.741 3 H 0.063 0.937 4 C -0.526 4.526 5 H 0.058 0.942 6 C 0.065 3.935 7 N -0.888 5.888 8 Si 0.898 3.102 9 H -0.277 1.277 10 H -0.286 1.286 11 H -0.277 1.277 12 N -0.593 5.593 13 C 0.085 3.915 14 C 0.500 3.500 15 O -0.540 6.540 16 C -0.147 4.147 17 C 0.253 3.747 18 H 0.115 0.885 19 N -0.726 5.726 20 C 0.716 3.284 21 N -0.869 5.869 22 O -0.592 6.592 23 C -0.175 4.175 24 C -0.130 4.130 25 C -0.130 4.130 26 C -0.222 4.222 27 S 0.099 5.901 28 H 0.030 0.970 29 H 0.093 0.907 30 H 0.010 0.990 31 H 0.264 0.736 32 H 0.049 0.951 33 H 0.051 0.949 34 H 0.073 0.927 35 H 0.093 0.907 36 H 0.107 0.893 37 H 0.394 0.606 38 H 0.395 0.605 39 H 0.412 0.588 40 H 0.142 0.858 41 H 0.138 0.862 42 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.833 -5.121 19.923 20.652 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.159 3.841 3 H 0.081 0.919 4 C -0.565 4.565 5 H 0.076 0.924 6 C -0.137 4.137 7 N -0.527 5.527 8 Si 0.726 3.274 9 H -0.202 1.202 10 H -0.212 1.212 11 H -0.202 1.202 12 N -0.324 5.324 13 C -0.059 4.059 14 C 0.286 3.714 15 O -0.418 6.418 16 C -0.188 4.188 17 C 0.144 3.856 18 H 0.133 0.867 19 N -0.380 5.380 20 C 0.415 3.585 21 N -0.436 5.436 22 O -0.469 6.469 23 C -0.294 4.294 24 C -0.161 4.161 25 C -0.160 4.160 26 C -0.357 4.357 27 S 0.361 5.639 28 H 0.049 0.951 29 H 0.112 0.888 30 H 0.029 0.971 31 H 0.074 0.926 32 H 0.068 0.932 33 H 0.070 0.930 34 H 0.091 0.909 35 H 0.111 0.889 36 H 0.125 0.875 37 H 0.228 0.772 38 H 0.222 0.778 39 H 0.244 0.756 40 H 0.159 0.841 41 H 0.156 0.844 42 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges 1.467 -4.146 20.030 20.508 hybrid contribution 0.924 -0.739 -1.197 1.683 sum 2.391 -4.886 18.834 19.604 Atomic orbital electron populations 1.22094 0.98323 0.99290 1.00771 1.18916 0.90736 0.94507 0.79965 0.91913 1.21281 1.31875 1.13001 0.90330 0.92358 1.24888 0.94927 0.94962 0.98970 1.69859 1.36322 1.22610 1.23874 0.86560 0.79295 0.79553 0.82007 1.20242 1.21179 1.20217 1.48239 1.49039 1.11591 1.23577 1.21573 1.01717 0.83321 0.99267 1.20181 0.79643 0.87269 0.84287 1.90714 1.57740 1.16762 1.76571 1.22091 1.00993 0.99595 0.96121 1.18839 0.93434 0.84312 0.88970 0.86686 1.44871 1.10814 1.11519 1.70788 1.15795 0.85177 0.80305 0.77263 1.42913 1.11464 1.15498 1.73751 1.90945 1.13532 1.82215 1.60240 1.25128 0.98370 1.06198 0.99668 1.20134 0.95680 1.00866 0.99395 1.20160 1.00306 1.01966 0.93609 1.25580 0.97142 1.08589 1.04438 1.84064 1.15579 1.53870 1.10338 0.95139 0.88832 0.97103 0.92632 0.93242 0.92985 0.90865 0.88907 0.87470 0.77237 0.77780 0.75625 0.84065 0.84406 0.82187 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.38 8.95 37.16 0.33 -3.05 16 2 C 0.26 6.42 2.64 -69.09 -0.18 6.24 16 3 H 0.06 1.83 6.90 -51.93 -0.36 1.47 16 4 C -0.53 -14.03 8.37 -34.44 -0.29 -14.32 16 5 H 0.06 1.53 7.65 -52.49 -0.40 1.13 16 6 C 0.06 1.76 5.30 -17.82 -0.09 1.66 16 7 N -0.89 -24.97 11.32 55.43 0.63 -24.35 16 8 Si 0.90 20.96 29.54 -169.99 -5.02 15.94 16 9 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 10 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 11 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 12 N -0.59 -11.87 2.75 -175.26 -0.48 -12.36 16 13 C 0.09 1.33 9.48 59.85 0.57 1.89 16 14 C 0.50 9.52 7.54 -10.99 -0.08 9.43 16 15 O -0.54 -12.54 14.68 5.56 0.08 -12.46 16 16 C -0.15 -1.97 3.78 -27.88 -0.11 -2.08 16 17 C 0.25 3.60 1.96 -69.09 -0.14 3.47 16 18 H 0.12 2.03 7.37 -51.93 -0.38 1.64 16 19 N -0.73 -9.89 3.98 -59.81 -0.24 -10.13 16 20 C 0.72 11.04 8.80 -86.92 -0.76 10.28 16 21 N -0.87 -9.37 8.88 27.64 0.25 -9.13 16 22 O -0.59 -11.72 16.84 5.29 0.09 -11.63 16 23 C -0.17 -2.19 5.42 -36.00 -0.20 -2.38 16 24 C -0.13 -1.57 10.04 -41.21 -0.41 -1.98 16 25 C -0.13 -1.34 10.18 -41.21 -0.42 -1.76 16 26 C -0.22 -2.15 11.23 29.04 0.33 -1.83 16 27 S 0.10 1.03 23.06 -107.50 -2.48 -1.45 16 28 H 0.03 0.65 6.66 -51.93 -0.35 0.30 16 29 H 0.09 2.41 6.07 -51.93 -0.32 2.09 16 30 H 0.01 0.22 8.14 -51.93 -0.42 -0.21 16 31 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 32 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 33 H 0.05 0.61 6.44 -51.93 -0.33 0.27 16 34 H 0.07 1.17 6.43 -51.93 -0.33 0.83 16 35 H 0.09 1.01 7.40 -51.93 -0.38 0.63 16 36 H 0.11 1.29 8.11 -51.93 -0.42 0.87 16 37 H 0.39 4.47 8.62 -40.82 -0.35 4.12 16 38 H 0.39 3.07 8.84 -40.82 -0.36 2.70 16 39 H 0.41 3.93 8.93 -40.82 -0.36 3.57 16 40 H 0.14 1.62 8.06 -52.49 -0.42 1.19 16 41 H 0.14 1.12 8.06 -52.48 -0.42 0.70 16 42 H 0.16 1.15 8.06 -52.49 -0.42 0.73 16 LS Contribution 364.22 15.07 5.49 5.49 Total: -1.00 -34.86 364.22 -8.75 -43.61 By element: Atomic # 1 Polarization: 16.50 SS G_CDS: -5.60 Total: 10.90 kcal Atomic # 6 Polarization: 7.03 SS G_CDS: -1.45 Total: 5.58 kcal Atomic # 7 Polarization: -56.12 SS G_CDS: 0.15 Total: -55.96 kcal Atomic # 8 Polarization: -24.26 SS G_CDS: 0.17 Total: -24.09 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -5.02 Total: 15.94 kcal Atomic # 16 Polarization: 1.03 SS G_CDS: -2.48 Total: -1.45 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -34.86 -8.75 -43.61 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264090621.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.429 kcal (2) G-P(sol) polarization free energy of solvation -34.863 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.434 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.746 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.609 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.180 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds