Wall clock time and date at job start Tue Mar 31 2020 14:28:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09006 * 109.46698 * 2 1 4 4 C 1.52997 * 109.47194 * 119.99781 * 2 1 3 5 5 S 1.81400 * 109.47202 * 185.00499 * 4 2 1 6 6 C 1.81396 * 102.99913 * 180.02562 * 5 4 2 7 7 O 1.42105 * 109.46645 * 296.38557 * 5 4 2 8 8 N 1.46498 * 109.47243 * 240.00038 * 2 1 3 9 9 C 1.46496 * 120.00218 * 299.99718 * 8 2 1 10 10 C 1.34774 * 119.99886 * 119.99938 * 8 2 1 11 11 O 1.21580 * 120.00265 * 359.97438 * 10 8 2 12 12 N 1.34778 * 120.00095 * 180.02562 * 10 8 2 13 13 C 1.39460 * 120.00379 * 175.33145 * 12 10 8 14 14 C 1.38637 * 119.64900 * 185.45141 * 13 12 10 15 15 C 1.40823 * 118.67312 * 179.97438 * 14 13 12 16 16 C 1.41541 * 120.99781 * 179.97438 * 15 14 13 17 17 H 1.08004 * 120.00018 * 198.25544 * 16 15 14 18 18 C 1.40034 * 120.00070 * 18.25770 * 16 15 14 19 19 N 1.30740 * 119.99985 * 19.52078 * 18 16 15 20 20 Si 1.86799 * 120.00131 * 199.52583 * 18 16 15 21 21 H 1.48495 * 109.47291 * 59.99342 * 20 18 16 22 22 H 1.48501 * 109.47100 * 179.97438 * 20 18 16 23 23 H 1.48507 * 109.46979 * 299.99578 * 20 18 16 24 24 C 1.41163 * 118.00680 * 0.02562 * 15 14 13 25 25 C 1.36593 * 119.12656 * 359.97438 * 24 15 14 26 26 N 1.32069 * 121.25681 * 359.74522 * 25 24 15 27 27 H 1.08998 * 109.47508 * 299.99806 * 1 2 3 28 28 H 1.09008 * 109.47059 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.47181 * 60.00058 * 1 2 3 30 30 H 1.09004 * 109.46981 * 305.00376 * 4 2 1 31 31 H 1.08999 * 109.47012 * 65.00434 * 4 2 1 32 32 H 1.09005 * 109.47660 * 59.99933 * 6 5 4 33 33 H 1.09002 * 109.47339 * 179.97438 * 6 5 4 34 34 H 1.09005 * 109.47375 * 299.99873 * 6 5 4 35 35 H 1.09002 * 109.47016 * 89.99551 * 9 8 2 36 36 H 1.08990 * 109.47616 * 210.00005 * 9 8 2 37 37 H 1.09004 * 109.47025 * 330.00857 * 9 8 2 38 38 H 0.97000 * 119.99782 * 355.33106 * 12 10 8 39 39 H 1.08000 * 120.66479 * 359.97438 * 14 13 12 40 40 H 0.96992 * 120.00377 * 180.02562 * 19 18 16 41 41 H 1.07995 * 120.43919 * 180.02562 * 24 15 14 42 42 H 1.08004 * 119.37130 * 179.97438 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2492 5 16 3.8479 -0.5931 1.3257 6 6 4.2567 -1.4927 2.8469 7 8 4.4178 -1.2651 0.2109 8 7 2.0184 -0.6906 -1.1962 9 6 1.6645 -2.0931 -1.4280 10 6 2.7932 -0.0356 -2.0833 11 8 3.0865 1.1286 -1.8911 12 7 3.2421 -0.6707 -3.1840 13 6 3.9617 0.0321 -4.1500 14 6 4.3219 -0.5988 -5.3307 15 6 5.0479 0.1304 -6.2922 16 6 5.4414 -0.4652 -7.5144 17 1 6.2284 -0.0185 -8.1040 18 6 4.8104 -1.6335 -7.9592 19 7 3.6392 -1.9658 -7.4826 20 14 5.6420 -2.7172 -9.2333 21 1 6.9453 -3.1927 -8.7039 22 1 4.7742 -3.8845 -9.5326 23 1 5.8677 -1.9361 -10.4760 24 6 5.3723 1.4728 -6.0000 25 6 4.9738 2.0089 -4.8086 26 7 4.2891 1.2973 -3.9317 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 -0.8900 30 1 1.6053 -0.2616 2.1370 31 1 1.7517 -1.7714 1.2056 32 1 3.9130 -2.5237 2.7629 33 1 5.3363 -1.4812 2.9969 34 1 3.7666 -1.0143 3.6949 35 1 0.7376 -2.1444 -1.9993 36 1 2.4629 -2.5818 -1.9863 37 1 1.5295 -2.5968 -0.4708 38 1 3.0646 -1.6167 -3.3043 39 1 4.0513 -1.6289 -5.5097 40 1 3.2022 -2.7752 -7.7904 41 1 5.9276 2.0684 -6.7095 42 1 5.2203 3.0355 -4.5808 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000871728362.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:28:20 Heat of formation + Delta-G solvation = -35.544496 kcal Electronic energy + Delta-G solvation = -25875.302184 eV Core-core repulsion = 22175.141563 eV Total energy + Delta-G solvation = -3700.160621 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 325.125 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.56742 -39.98334 -37.53326 -36.58790 -36.11387 -35.60601 -33.12518 -32.37596 -30.12951 -29.78500 -28.21029 -27.95224 -27.86280 -24.15865 -23.76139 -22.14835 -20.56547 -19.61943 -19.30015 -18.33264 -17.61690 -17.27726 -16.86487 -16.60434 -16.27323 -16.03722 -15.84650 -15.51052 -15.23792 -14.77379 -14.71551 -14.67175 -14.34184 -14.03851 -13.90044 -13.70979 -13.52338 -13.41009 -13.18897 -12.98692 -12.93948 -12.81387 -12.63014 -12.47578 -12.00949 -11.97583 -11.90288 -11.50257 -11.14734 -11.11261 -10.98527 -9.97889 -9.66149 -9.58197 -9.05396 -8.82106 -8.64530 -6.57110 0.70409 0.86471 1.01848 1.38038 1.49893 1.59291 1.62121 1.89370 2.17366 2.32479 2.81723 2.87286 3.03613 3.74174 3.79926 4.06138 4.09364 4.17619 4.29321 4.30981 4.50043 4.52641 4.58936 4.65858 4.72422 4.84740 4.85102 4.88089 4.93627 5.06413 5.10916 5.13417 5.23163 5.30473 5.51890 5.60955 5.69531 5.84852 5.94225 6.23314 6.55267 6.78544 6.82391 6.87411 7.62155 7.93172 8.21791 Molecular weight = 325.12amu Principal moments of inertia in cm(-1) A = 0.017917 B = 0.003284 C = 0.003222 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1562.373419 B = 8524.953110 C = 8689.213218 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.160 3.840 3 H 0.098 0.902 4 C -0.447 4.447 5 S 1.246 4.754 6 C -0.482 4.482 7 O -0.907 6.907 8 N -0.627 5.627 9 C 0.080 3.920 10 C 0.701 3.299 11 O -0.573 6.573 12 N -0.665 5.665 13 C 0.353 3.647 14 C -0.279 4.279 15 C 0.114 3.886 16 C -0.481 4.481 17 H 0.087 0.913 18 C 0.038 3.962 19 N -0.805 5.805 20 Si 0.990 3.010 21 H -0.262 1.262 22 H -0.264 1.264 23 H -0.255 1.255 24 C -0.304 4.304 25 C 0.116 3.884 26 N -0.579 5.579 27 H 0.102 0.898 28 H 0.066 0.934 29 H 0.041 0.959 30 H 0.177 0.823 31 H 0.092 0.908 32 H 0.067 0.933 33 H 0.099 0.901 34 H 0.149 0.851 35 H 0.069 0.931 36 H 0.050 0.950 37 H 0.090 0.910 38 H 0.410 0.590 39 H 0.124 0.876 40 H 0.293 0.707 41 H 0.117 0.883 42 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.281 -2.455 19.660 21.108 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.056 3.944 3 H 0.116 0.884 4 C -0.586 4.586 5 S 1.447 4.553 6 C -0.641 4.641 7 O -0.903 6.903 8 N -0.365 5.365 9 C -0.063 4.063 10 C 0.402 3.598 11 O -0.449 6.449 12 N -0.314 5.314 13 C 0.126 3.874 14 C -0.305 4.305 15 C 0.105 3.895 16 C -0.511 4.511 17 H 0.105 0.895 18 C -0.180 4.180 19 N -0.430 5.430 20 Si 0.809 3.191 21 H -0.186 1.186 22 H -0.188 1.188 23 H -0.179 1.179 24 C -0.328 4.328 25 C -0.037 4.037 26 N -0.299 5.299 27 H 0.120 0.880 28 H 0.085 0.915 29 H 0.060 0.940 30 H 0.194 0.806 31 H 0.111 0.889 32 H 0.087 0.913 33 H 0.117 0.883 34 H 0.167 0.833 35 H 0.087 0.913 36 H 0.069 0.931 37 H 0.109 0.891 38 H 0.248 0.752 39 H 0.142 0.858 40 H 0.104 0.896 41 H 0.135 0.865 42 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -6.956 -0.965 20.018 21.214 hybrid contribution -0.051 -3.599 -1.769 4.010 sum -7.007 -4.564 18.249 20.074 Atomic orbital electron populations 1.22074 0.92197 1.03042 1.03191 1.20783 0.95970 0.96952 0.80695 0.88430 1.28037 1.19554 1.06634 1.04333 1.70067 0.86162 1.14295 0.84774 1.27604 1.08791 1.10041 1.17662 1.93134 1.72364 1.77186 1.47602 1.47240 1.52891 1.12809 1.23611 1.21740 1.00362 0.81194 1.03043 1.16063 0.79000 0.84711 0.79980 1.90900 1.61722 1.15988 1.76245 1.42656 1.55888 1.12754 1.20128 1.18229 0.92219 0.89916 0.87004 1.21580 1.13299 1.01824 0.93825 1.17976 0.88072 0.90850 0.92553 1.19900 1.18162 1.08627 1.04441 0.89515 1.26922 0.93850 0.98140 0.99057 1.69825 1.12214 1.22949 1.38035 0.85145 0.78970 0.77247 0.77722 1.18627 1.18836 1.17928 1.21784 1.13601 0.96524 1.00913 1.21967 0.93237 0.98741 0.89728 1.67343 1.21372 1.06628 1.34537 0.87962 0.91494 0.94015 0.80559 0.88880 0.91340 0.88250 0.83294 0.91296 0.93135 0.89113 0.75238 0.85799 0.89631 0.86503 0.83159 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.40 9.19 71.98 0.66 -1.74 16 2 C 0.16 3.59 2.64 44.99 0.12 3.71 16 3 H 0.10 2.52 6.90 -2.38 -0.02 2.50 16 4 C -0.45 -6.31 5.33 71.98 0.38 -5.93 16 5 S 1.25 24.97 13.73 -56.49 -0.78 24.19 16 6 C -0.48 -6.15 10.74 113.37 1.22 -4.93 16 7 O -0.91 -33.69 16.70 -148.98 -2.49 -36.18 16 8 N -0.63 -19.81 1.81 -840.64 -1.52 -21.33 16 9 C 0.08 2.04 9.30 127.77 1.19 3.23 16 10 C 0.70 30.93 7.64 179.05 1.37 32.29 16 11 O -0.57 -28.90 13.93 -3.97 -0.06 -28.95 16 12 N -0.67 -31.60 5.27 -322.37 -1.70 -33.29 16 13 C 0.35 19.55 7.42 132.76 0.98 20.54 16 14 C -0.28 -15.86 8.69 23.00 0.20 -15.66 16 15 C 0.11 6.50 5.66 -21.11 -0.12 6.38 16 16 C -0.48 -26.18 9.12 23.52 0.21 -25.96 16 17 H 0.09 4.47 7.92 -2.91 -0.02 4.44 16 18 C 0.04 1.91 5.20 85.29 0.44 2.35 16 19 N -0.81 -41.35 10.73 21.84 0.23 -41.12 16 20 Si 0.99 37.38 29.60 68.60 2.03 39.42 16 21 H -0.26 -9.83 7.11 99.48 0.71 -9.12 16 22 H -0.26 -9.32 7.11 99.48 0.71 -8.61 16 23 H -0.26 -9.26 7.11 99.48 0.71 -8.55 16 24 C -0.30 -16.09 9.85 22.60 0.22 -15.87 16 25 C 0.12 6.04 11.10 84.27 0.94 6.98 16 26 N -0.58 -32.65 7.85 -194.27 -1.53 -34.17 16 27 H 0.10 1.00 8.14 -2.39 -0.02 0.98 16 28 H 0.07 0.95 7.67 -2.38 -0.02 0.93 16 29 H 0.04 0.88 8.14 -2.39 -0.02 0.86 16 30 H 0.18 0.67 8.14 -2.39 -0.02 0.65 16 31 H 0.09 1.28 6.47 -2.39 -0.02 1.27 16 32 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 33 H 0.10 1.40 8.14 -2.39 -0.02 1.38 16 34 H 0.15 0.66 8.14 -2.39 -0.02 0.64 16 35 H 0.07 1.54 8.14 -2.39 -0.02 1.53 16 36 H 0.05 1.47 6.30 -2.39 -0.02 1.45 16 37 H 0.09 1.79 6.34 -2.39 -0.02 1.77 16 38 H 0.41 17.30 6.39 -92.71 -0.59 16.71 16 39 H 0.12 7.04 5.90 -2.91 -0.02 7.02 16 40 H 0.29 13.39 8.29 -92.71 -0.77 12.62 16 41 H 0.12 5.58 8.06 -2.91 -0.02 5.56 16 42 H 0.15 6.66 8.06 -2.91 -0.02 6.63 16 Total: -1.00 -86.87 358.11 2.47 -84.40 By element: Atomic # 1 Polarization: 41.20 SS G_CDS: 0.46 Total: 41.66 kcal Atomic # 6 Polarization: -2.44 SS G_CDS: 7.82 Total: 5.38 kcal Atomic # 7 Polarization: -125.40 SS G_CDS: -4.51 Total: -129.91 kcal Atomic # 8 Polarization: -62.59 SS G_CDS: -2.54 Total: -65.14 kcal Atomic # 14 Polarization: 37.38 SS G_CDS: 2.03 Total: 39.42 kcal Atomic # 16 Polarization: 24.97 SS G_CDS: -0.78 Total: 24.19 kcal Total: -86.87 2.47 -84.40 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000871728362.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.855 kcal (2) G-P(sol) polarization free energy of solvation -86.873 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.018 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.474 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.399 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.544 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds