Wall clock time and date at job start Tue Mar 31 2020 14:03:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08997 * 109.47300 * 2 1 4 4 N 1.46504 * 109.46663 * 240.00601 * 2 1 3 5 5 C 1.34776 * 119.99864 * 85.00177 * 4 2 1 6 6 O 1.21649 * 120.00291 * 359.97438 * 5 4 2 7 7 C 1.47182 * 120.00133 * 179.97438 * 5 4 2 8 8 C 1.35092 * 122.49067 * 179.97438 * 7 5 4 9 9 S 1.76189 * 108.21881 * 179.97438 * 8 7 5 10 10 C 1.76058 * 90.16101 * 0.02562 * 9 8 7 11 11 O 1.35487 * 125.18097 * 179.97438 * 10 9 8 12 12 N 1.29259 * 109.63682 * 359.75585 * 10 9 8 13 13 C 1.53001 * 109.47166 * 120.00872 * 2 1 3 14 14 H 1.08995 * 109.49518 * 179.97438 * 13 2 1 15 15 C 1.53035 * 109.49468 * 299.99638 * 13 2 1 16 16 C 1.53040 * 109.53550 * 181.31678 * 15 13 2 17 17 C 1.53188 * 109.31317 * 298.63656 * 16 15 13 18 18 N 1.46922 * 108.89495 * 54.56580 * 17 16 15 19 19 C 1.36933 * 120.63530 * 126.46626 * 18 17 16 20 20 H 1.08000 * 119.99448 * 331.90480 * 19 18 17 21 21 C 1.38810 * 120.00381 * 151.90886 * 19 18 17 22 22 N 1.31619 * 119.99689 * 343.17487 * 21 19 18 23 23 Si 1.86795 * 119.99988 * 163.17654 * 21 19 18 24 24 H 1.48499 * 109.47320 * 89.99982 * 23 21 19 25 25 H 1.48500 * 109.47299 * 209.99808 * 23 21 19 26 26 H 1.48507 * 109.47261 * 329.99989 * 23 21 19 27 27 C 1.46965 * 118.71181 * 306.64057 * 18 17 16 28 28 H 1.08988 * 109.47417 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.46458 * 299.99493 * 1 2 3 30 30 H 1.08997 * 109.47150 * 59.98936 * 1 2 3 31 31 H 0.97004 * 119.99978 * 264.99959 * 4 2 1 32 32 H 1.07999 * 125.88943 * 0.02562 * 8 7 5 33 33 H 0.96704 * 114.00076 * 0.02562 * 11 10 9 34 34 H 1.09002 * 109.46324 * 61.29705 * 15 13 2 35 35 H 1.09000 * 109.46027 * 301.33395 * 15 13 2 36 36 H 1.09003 * 109.50059 * 178.68339 * 16 15 13 37 37 H 1.09009 * 109.52415 * 58.60433 * 16 15 13 38 38 H 1.09003 * 109.58536 * 174.42300 * 17 16 15 39 39 H 1.09006 * 109.58643 * 294.70042 * 17 16 15 40 40 H 0.97000 * 119.99637 * 180.02562 * 22 21 19 41 41 H 1.09007 * 109.46590 * 293.57236 * 27 18 17 42 42 H 1.09004 * 109.59398 * 173.22166 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0183 -0.6905 -1.1963 5 6 2.1470 -0.0180 -2.3572 6 8 1.8573 1.1622 -2.4118 7 6 2.6380 -0.7115 -3.5589 8 6 2.7858 -0.0871 -4.7477 9 16 3.3921 -1.2598 -5.9144 10 6 3.3897 -2.5059 -4.6706 11 8 3.7693 -3.7934 -4.8547 12 7 2.9751 -2.0041 -3.5539 13 6 2.0401 -0.7214 1.2491 14 1 3.1300 -0.7221 1.2493 15 6 1.5303 -0.0006 2.4991 16 6 2.0668 -0.7021 3.7490 17 6 1.5535 -2.1451 3.7798 18 7 1.9122 -2.8048 2.5170 19 6 2.5959 -3.9912 2.5192 20 1 3.2570 -4.2319 3.3386 21 6 2.4395 -4.8844 1.4682 22 7 1.4149 -4.7656 0.6506 23 14 3.6830 -6.2550 1.2144 24 1 3.2558 -7.4578 1.9734 25 1 3.7670 -6.5858 -0.2309 26 1 5.0148 -5.8111 1.6989 27 6 1.5264 -2.1646 1.2516 28 1 -0.3633 -1.0275 -0.0005 29 1 -0.3632 0.5138 0.8901 30 1 -0.3633 0.5140 -0.8899 31 1 2.2490 -1.6317 -1.1529 32 1 2.5702 0.9521 -4.9481 33 1 4.0558 -3.9939 -5.7563 34 1 0.4405 -0.0207 2.5110 35 1 1.8741 1.0337 2.4875 36 1 1.7226 -0.1744 4.6385 37 1 3.1567 -0.7040 3.7262 38 1 2.0111 -2.6780 4.6133 39 1 0.4698 -2.1450 3.8972 40 1 1.3054 -5.3900 -0.0835 41 1 0.4402 -2.1661 1.1601 42 1 1.9661 -2.7105 0.4168 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001025514549.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:03:59 Heat of formation + Delta-G solvation = -6.956824 kcal Electronic energy + Delta-G solvation = -26129.497857 eV Core-core repulsion = 22430.576891 eV Total energy + Delta-G solvation = -3698.920966 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 325.125 amu Computer time = 1.50 seconds Orbital eigenvalues (eV) -40.45329 -39.19441 -38.07281 -37.29544 -35.02279 -33.03043 -31.32129 -30.16522 -29.81579 -28.15254 -25.73448 -25.23179 -23.76409 -22.47398 -21.94402 -20.35911 -20.24676 -19.47632 -18.49555 -17.60533 -16.74289 -16.40413 -15.86041 -15.67012 -15.44404 -14.85703 -14.55068 -14.18841 -14.04194 -13.69976 -13.49227 -13.02308 -12.98920 -12.71883 -12.41479 -12.34626 -12.22116 -12.05392 -11.68958 -11.47195 -10.98119 -10.78126 -10.57541 -10.39624 -10.16964 -10.10645 -10.00819 -9.86534 -9.79968 -9.75398 -9.48187 -9.34111 -8.88257 -8.61458 -8.42005 -6.60542 -5.74789 -3.16861 0.38408 0.62037 1.15182 1.99444 2.70912 3.40985 3.45332 3.48865 3.50534 3.54018 4.53627 4.62594 5.01820 5.11397 5.20357 5.36057 5.50342 5.62188 5.63671 5.67689 5.74755 5.84375 5.95083 6.12166 6.25482 6.33432 6.34090 6.39790 6.49701 6.53561 6.59069 6.72285 6.83418 6.88697 6.94124 7.06163 7.36853 7.42654 7.64256 7.83414 7.89288 8.40808 8.49121 9.25667 9.88921 10.46152 11.33415 Molecular weight = 325.12amu Principal moments of inertia in cm(-1) A = 0.010695 B = 0.004825 C = 0.003479 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2617.307634 B = 5801.200188 C = 8046.075921 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.151 3.849 3 H 0.080 0.920 4 N -0.693 5.693 5 C 0.590 3.410 6 O -0.544 6.544 7 C 0.052 3.948 8 C -0.182 4.182 9 S 0.034 5.966 10 C 0.296 3.704 11 O -0.413 6.413 12 N -0.464 5.464 13 C -0.124 4.124 14 H 0.068 0.932 15 C -0.101 4.101 16 C -0.134 4.134 17 C 0.144 3.856 18 N -0.591 5.591 19 C -0.255 4.255 20 H 0.064 0.936 21 C 0.006 3.994 22 N -0.899 5.899 23 Si 0.898 3.102 24 H -0.288 1.288 25 H -0.288 1.288 26 H -0.280 1.280 27 C 0.176 3.824 28 H 0.070 0.930 29 H 0.066 0.934 30 H 0.051 0.949 31 H 0.418 0.582 32 H 0.194 0.806 33 H 0.416 0.584 34 H 0.060 0.940 35 H 0.046 0.954 36 H 0.050 0.950 37 H 0.056 0.944 38 H 0.051 0.949 39 H 0.016 0.984 40 H 0.254 0.746 41 H 0.025 0.975 42 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.668 8.352 -12.080 14.927 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.047 3.953 3 H 0.098 0.902 4 N -0.344 5.344 5 C 0.372 3.628 6 O -0.423 6.423 7 C -0.078 4.078 8 C -0.323 4.323 9 S 0.281 5.719 10 C -0.025 4.025 11 O -0.212 6.212 12 N -0.194 5.194 13 C -0.145 4.145 14 H 0.087 0.913 15 C -0.139 4.139 16 C -0.173 4.173 17 C 0.018 3.982 18 N -0.314 5.314 19 C -0.384 4.384 20 H 0.081 0.919 21 C -0.193 4.193 22 N -0.543 5.543 23 Si 0.728 3.272 24 H -0.215 1.215 25 H -0.214 1.214 26 H -0.206 1.206 27 C 0.050 3.950 28 H 0.089 0.911 29 H 0.085 0.915 30 H 0.070 0.930 31 H 0.257 0.743 32 H 0.211 0.789 33 H 0.271 0.729 34 H 0.079 0.921 35 H 0.065 0.935 36 H 0.069 0.931 37 H 0.075 0.925 38 H 0.070 0.930 39 H 0.034 0.966 40 H 0.064 0.936 41 H 0.043 0.957 42 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 2.557 8.543 -12.240 15.144 hybrid contribution 0.650 -0.945 -0.212 1.167 sum 3.208 7.598 -12.452 14.936 Atomic orbital electron populations 1.22264 0.95341 1.03154 1.01570 1.21047 0.94296 0.96337 0.83664 0.90208 1.46138 1.64123 1.15439 1.08692 1.17016 0.77989 0.85706 0.82048 1.90791 1.51896 1.14806 1.84760 1.20161 1.04309 0.87622 0.95708 1.26760 1.07234 1.04624 0.93646 1.85258 1.65643 1.04654 1.16388 1.25369 0.98057 0.88766 0.90334 1.84823 1.80811 1.18930 1.36653 1.66228 1.17984 1.11294 1.23854 1.22141 1.00693 0.99687 0.91931 0.91316 1.21428 1.00333 0.97469 0.94669 1.22003 1.00659 0.98349 0.96302 1.20910 0.96338 0.90946 0.90010 1.43995 1.65836 1.22148 0.99400 1.19146 1.18091 0.93877 1.07312 0.91861 1.25004 0.96965 0.97381 0.99986 1.70001 1.27270 1.38253 1.18779 0.86368 0.81461 0.82154 0.77227 1.21511 1.21401 1.20601 1.20881 0.96724 0.86942 0.90441 0.91112 0.91546 0.92989 0.74285 0.78878 0.72914 0.92121 0.93496 0.93125 0.92504 0.93021 0.96568 0.93592 0.95661 0.89586 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 28. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.71 8.79 37.16 0.33 -2.38 16 2 C 0.15 2.61 2.41 -67.93 -0.16 2.45 16 3 H 0.08 1.36 7.58 -51.93 -0.39 0.97 16 4 N -0.69 -12.49 5.00 -54.95 -0.27 -12.76 16 5 C 0.59 10.28 7.75 -12.63 -0.10 10.18 16 6 O -0.54 -10.12 16.33 5.23 0.09 -10.04 16 7 C 0.05 0.81 6.67 -84.59 -0.56 0.24 16 8 C -0.18 -2.18 10.84 29.61 0.32 -1.86 16 9 S 0.03 0.31 23.38 -107.50 -2.51 -2.20 16 10 C 0.30 3.71 8.91 51.68 0.46 4.17 16 11 O -0.41 -4.36 13.64 -18.15 -0.25 -4.61 16 12 N -0.46 -7.53 10.01 -11.34 -0.11 -7.65 16 13 C -0.12 -2.33 2.33 -90.50 -0.21 -2.54 16 14 H 0.07 1.38 8.14 -51.93 -0.42 0.96 16 15 C -0.10 -1.69 4.78 -26.69 -0.13 -1.82 16 16 C -0.13 -2.33 6.08 -26.61 -0.16 -2.50 16 17 C 0.14 3.04 6.51 -3.72 -0.02 3.01 16 18 N -0.59 -14.73 3.00 -172.29 -0.52 -15.25 16 19 C -0.25 -7.00 9.58 -15.06 -0.14 -7.14 16 20 H 0.06 1.72 7.88 -52.49 -0.41 1.31 16 21 C 0.01 0.15 4.92 -17.43 -0.09 0.07 16 22 N -0.90 -25.77 11.20 55.49 0.62 -25.15 16 23 Si 0.90 21.92 29.59 -169.99 -5.03 16.89 16 24 H -0.29 -7.02 7.11 56.52 0.40 -6.61 16 25 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 26 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 27 C 0.18 4.05 4.08 -3.69 -0.02 4.04 16 28 H 0.07 1.27 6.32 -51.94 -0.33 0.94 16 29 H 0.07 0.98 6.46 -51.93 -0.34 0.64 16 30 H 0.05 0.84 8.14 -51.93 -0.42 0.41 16 31 H 0.42 8.22 6.45 -40.82 -0.26 7.96 16 32 H 0.19 1.99 8.01 -52.49 -0.42 1.57 16 33 H 0.42 1.46 9.03 45.56 0.41 1.87 16 34 H 0.06 0.99 6.50 -51.93 -0.34 0.66 16 35 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 36 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 37 H 0.06 1.02 8.14 -51.92 -0.42 0.60 16 38 H 0.05 1.07 7.93 -51.93 -0.41 0.66 16 39 H 0.02 0.35 8.14 -51.93 -0.42 -0.08 16 40 H 0.25 7.14 8.31 -40.82 -0.34 6.80 16 41 H 0.03 0.62 6.18 -51.93 -0.32 0.30 16 42 H 0.09 2.21 4.66 -51.93 -0.24 1.97 16 LS Contribution 351.27 15.07 5.29 5.29 Total: -1.00 -33.18 351.27 -7.91 -41.09 By element: Atomic # 1 Polarization: 13.18 SS G_CDS: -4.73 Total: 8.45 kcal Atomic # 6 Polarization: 6.41 SS G_CDS: -0.49 Total: 5.93 kcal Atomic # 7 Polarization: -60.52 SS G_CDS: -0.28 Total: -60.81 kcal Atomic # 8 Polarization: -14.49 SS G_CDS: -0.16 Total: -14.65 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.03 Total: 16.89 kcal Atomic # 16 Polarization: 0.31 SS G_CDS: -2.51 Total: -2.20 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -33.18 -7.91 -41.09 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001025514549.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.136 kcal (2) G-P(sol) polarization free energy of solvation -33.184 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.952 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.909 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.093 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.957 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.50 seconds