Wall clock time and date at job start Tue Mar 31 2020 13:55:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42901 * 113.99617 * 2 1 4 4 H 1.09002 * 109.47372 * 329.99952 * 3 2 1 5 5 C 1.52995 * 109.47569 * 89.99833 * 3 2 1 6 6 C 1.50697 * 109.47022 * 210.00036 * 3 2 1 7 7 N 1.29433 * 124.80744 * 315.03939 * 6 3 2 8 8 C 1.30941 * 117.36683 * 179.69403 * 7 6 3 9 9 C 1.35657 * 114.19201 * 0.48172 * 8 7 6 10 10 C 1.46677 * 126.13217 * 179.82138 * 9 8 7 11 11 O 1.21688 * 120.00314 * 179.69333 * 10 9 8 12 12 N 1.34780 * 119.99979 * 359.69127 * 10 9 8 13 13 C 1.46504 * 119.99881 * 179.97438 * 12 10 9 14 14 C 1.53004 * 109.46788 * 180.02562 * 13 12 10 15 15 H 1.08999 * 112.96161 * 53.32223 * 14 13 12 16 16 C 1.53940 * 113.76777 * 185.00232 * 14 13 12 17 17 C 1.53950 * 86.29166 * 137.91192 * 16 14 13 18 18 N 1.47578 * 113.77057 * 281.49972 * 14 13 12 19 19 C 1.36931 * 134.49445 * 41.05321 * 18 14 13 20 20 H 1.08004 * 120.00375 * 353.49485 * 19 18 14 21 21 C 1.38817 * 120.00234 * 173.49053 * 19 18 14 22 22 N 1.31622 * 119.99690 * 5.07171 * 21 19 18 23 23 Si 1.86797 * 120.00341 * 185.07372 * 21 19 18 24 24 H 1.48497 * 109.47150 * 94.98591 * 23 21 19 25 25 H 1.48501 * 109.47271 * 214.98753 * 23 21 19 26 26 H 1.48500 * 109.46929 * 334.98528 * 23 21 19 27 27 S 1.70949 * 124.80592 * 134.99821 * 6 3 2 28 28 H 1.09002 * 109.46597 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.47216 * 299.99894 * 1 2 3 30 30 H 1.08997 * 109.47607 * 60.00258 * 1 2 3 31 31 H 1.09005 * 109.47380 * 300.00101 * 5 3 2 32 32 H 1.09008 * 109.47076 * 59.99677 * 5 3 2 33 33 H 1.08998 * 109.47796 * 179.97438 * 5 3 2 34 34 H 1.07999 * 122.90187 * 180.30476 * 8 7 6 35 35 H 0.96994 * 120.00015 * 0.02562 * 12 10 9 36 36 H 1.08994 * 109.47378 * 300.00403 * 13 12 10 37 37 H 1.08998 * 109.46657 * 60.00632 * 13 12 10 38 38 H 1.09010 * 113.74157 * 252.25533 * 16 14 13 39 39 H 1.08997 * 113.74425 * 23.45828 * 16 14 13 40 40 H 1.08996 * 113.76715 * 90.69370 * 17 16 14 41 41 H 1.08996 * 113.76688 * 221.98288 * 17 16 14 42 42 H 0.96995 * 120.00376 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 1 1.3449 1.9994 -0.5138 5 6 2.2175 1.7715 1.4424 6 6 3.3385 1.2640 -0.7104 7 7 4.2428 0.3550 -0.5337 8 6 5.3444 0.4576 -1.2341 9 6 5.3817 1.5357 -2.0567 10 6 6.4850 1.9038 -2.9503 11 8 6.3976 2.8973 -3.6476 12 7 7.5957 1.1418 -2.9992 13 6 8.6974 1.5093 -3.8922 14 6 9.8269 0.4862 -3.7562 15 1 9.4902 -0.5406 -3.8994 16 6 11.0883 0.8438 -4.5629 17 6 11.8860 0.3882 -3.3275 18 7 10.6624 0.6787 -2.5551 19 6 10.4056 0.9984 -1.2486 20 1 9.4053 1.2707 -0.9458 21 6 11.4310 0.9725 -0.3132 22 7 12.6675 0.7385 -0.6986 23 14 11.0558 1.2696 1.4924 24 1 10.8726 -0.0334 2.1808 25 1 12.1838 2.0056 2.1178 26 1 9.8127 2.0728 1.6140 27 16 3.8641 2.4103 -1.8646 28 1 -0.3632 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 1.2567 1.8016 1.9563 32 1 2.8829 1.0776 1.9563 33 1 2.6612 2.7671 1.4425 34 1 6.1544 -0.2529 -1.1609 35 1 7.6652 0.3498 -2.4436 36 1 8.3413 1.5221 -4.9223 37 1 9.0683 2.4984 -3.6236 38 1 11.2411 0.2150 -5.4403 39 1 11.1830 1.9075 -4.7808 40 1 12.1553 -0.6678 -3.3434 41 1 12.7264 1.0379 -3.0833 42 1 13.3840 0.7200 -0.0450 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001038246782.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:55:46 Heat of formation + Delta-G solvation = 22.429852 kcal Electronic energy + Delta-G solvation = -24837.696842 eV Core-core repulsion = 21140.050178 eV Total energy + Delta-G solvation = -3697.646664 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 325.125 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.26483 -39.25907 -38.25925 -37.84311 -34.21301 -32.79939 -32.21216 -30.26220 -28.00266 -27.56143 -27.07174 -26.01587 -23.39326 -23.22913 -22.45628 -21.32283 -19.72326 -19.08227 -18.50196 -17.55724 -16.60581 -16.42719 -15.96136 -15.72237 -15.42425 -15.33563 -14.85592 -14.52757 -14.17447 -14.08521 -13.70402 -13.50621 -13.28337 -13.10520 -12.93652 -12.62039 -12.07874 -11.93260 -11.71206 -11.48594 -11.38697 -11.13983 -11.04051 -10.76985 -10.59516 -10.43716 -10.15668 -9.94420 -9.77611 -9.62090 -9.55752 -9.41338 -9.12241 -8.83264 -8.67526 -6.91488 -5.80861 -3.12630 0.10991 0.94222 1.49101 2.39747 3.28335 3.36710 3.40278 3.43097 3.44308 3.51590 3.78524 4.36613 4.40991 4.67586 4.77578 4.89521 4.93432 4.99632 5.06792 5.17705 5.25808 5.34063 5.35956 5.38466 5.57472 5.65393 5.81757 5.87225 5.91497 6.02080 6.26009 6.36702 6.57630 6.63282 6.70690 6.77818 7.22760 7.36498 7.51730 7.56723 7.69136 7.94936 8.32942 9.01100 9.67990 10.56554 11.36391 Molecular weight = 325.12amu Principal moments of inertia in cm(-1) A = 0.014225 B = 0.003261 C = 0.002831 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1967.829348 B = 8583.796630 C = 9887.218619 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.364 6.364 3 C 0.168 3.832 4 H 0.082 0.918 5 C -0.169 4.169 6 C 0.027 3.973 7 N -0.448 5.448 8 C 0.091 3.909 9 C -0.279 4.279 10 C 0.589 3.411 11 O -0.545 6.545 12 N -0.698 5.698 13 C 0.124 3.876 14 C 0.124 3.876 15 H 0.051 0.949 16 C -0.156 4.156 17 C 0.162 3.838 18 N -0.602 5.602 19 C -0.223 4.223 20 H 0.079 0.921 21 C -0.004 4.004 22 N -0.917 5.917 23 Si 0.904 3.096 24 H -0.288 1.288 25 H -0.290 1.290 26 H -0.281 1.281 27 S 0.229 5.771 28 H 0.090 0.910 29 H 0.044 0.956 30 H 0.043 0.957 31 H 0.069 0.931 32 H 0.076 0.924 33 H 0.071 0.929 34 H 0.185 0.815 35 H 0.404 0.596 36 H 0.064 0.936 37 H 0.076 0.924 38 H 0.054 0.946 39 H 0.077 0.923 40 H 0.029 0.971 41 H 0.070 0.930 42 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.706 0.500 -2.176 21.820 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.282 6.282 3 C 0.106 3.894 4 H 0.100 0.900 5 C -0.228 4.228 6 C -0.248 4.248 7 N -0.162 5.162 8 C -0.067 4.067 9 C -0.404 4.404 10 C 0.374 3.626 11 O -0.424 6.424 12 N -0.348 5.348 13 C 0.000 4.000 14 C 0.017 3.983 15 H 0.068 0.932 16 C -0.195 4.195 17 C 0.037 3.963 18 N -0.329 5.329 19 C -0.350 4.350 20 H 0.097 0.903 21 C -0.201 4.201 22 N -0.563 5.563 23 Si 0.734 3.266 24 H -0.215 1.215 25 H -0.217 1.217 26 H -0.206 1.206 27 S 0.487 5.513 28 H 0.109 0.891 29 H 0.063 0.937 30 H 0.062 0.938 31 H 0.088 0.912 32 H 0.095 0.905 33 H 0.090 0.910 34 H 0.202 0.798 35 H 0.239 0.761 36 H 0.082 0.918 37 H 0.094 0.906 38 H 0.073 0.927 39 H 0.095 0.905 40 H 0.047 0.953 41 H 0.088 0.912 42 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -22.122 1.617 -2.400 22.311 hybrid contribution 0.519 -0.873 1.529 1.836 sum -21.603 0.744 -0.871 21.633 Atomic orbital electron populations 1.22888 0.80698 1.03306 1.00089 1.88105 1.19553 1.25629 1.94920 1.20457 0.87331 0.86268 0.95321 0.90025 1.22274 1.03315 1.02400 0.94800 1.27300 1.00395 0.96374 1.00741 1.66028 1.00834 1.25536 1.23788 1.22325 0.95999 0.96574 0.91850 1.25936 1.02090 1.03116 1.09254 1.16672 0.81277 0.83309 0.81384 1.90817 1.81169 1.26402 1.44055 1.45749 1.16059 1.28857 1.44089 1.21871 0.85491 1.00451 0.92202 1.22518 0.91246 0.95372 0.89189 0.93170 1.23790 0.97133 1.01069 0.97473 1.22137 0.91833 0.97472 0.84903 1.46071 1.02044 1.80200 1.04561 1.18938 0.95062 1.38834 0.82185 0.90339 1.24792 0.95523 1.02000 0.97803 1.69832 0.98714 1.55021 1.32747 0.86224 0.77293 0.77678 0.85388 1.21544 1.21671 1.20619 1.83877 1.07622 1.25930 1.33869 0.89137 0.93711 0.93817 0.91198 0.90465 0.91039 0.79789 0.76063 0.91753 0.90616 0.92713 0.90462 0.95337 0.91215 0.93630 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.17 10.82 101.05 1.09 1.27 16 2 O -0.36 -3.90 10.32 -35.23 -0.36 -4.27 16 3 C 0.17 1.60 3.22 -27.89 -0.09 1.51 16 4 H 0.08 0.55 7.78 -51.93 -0.40 0.15 16 5 C -0.17 -1.41 9.51 37.15 0.35 -1.06 16 6 C 0.03 0.34 6.28 -13.29 -0.08 0.25 16 7 N -0.45 -6.52 10.49 -11.50 -0.12 -6.64 16 8 C 0.09 1.30 10.93 -18.85 -0.21 1.09 16 9 C -0.28 -4.20 6.48 -37.10 -0.24 -4.44 16 10 C 0.59 10.23 7.79 -12.85 -0.10 10.13 16 11 O -0.54 -10.90 16.97 5.20 0.09 -10.81 16 12 N -0.70 -11.75 5.50 -61.62 -0.34 -12.08 16 13 C 0.12 2.19 5.54 -4.04 -0.02 2.17 16 14 C 0.12 2.33 4.33 -66.87 -0.29 2.04 16 15 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 16 C -0.16 -2.77 7.86 -25.81 -0.20 -2.97 16 17 C 0.16 3.65 7.42 -2.97 -0.02 3.63 16 18 N -0.60 -14.44 3.57 -170.75 -0.61 -15.05 16 19 C -0.22 -5.92 10.50 -15.06 -0.16 -6.08 16 20 H 0.08 2.02 7.79 -52.48 -0.41 1.61 16 21 C 0.00 -0.11 5.50 -17.43 -0.10 -0.21 16 22 N -0.92 -26.75 11.51 55.49 0.64 -26.11 16 23 Si 0.90 22.03 29.56 -169.99 -5.02 17.01 16 24 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 25 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 26 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 27 S 0.23 2.82 23.01 -107.50 -2.47 0.35 16 28 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 29 H 0.04 0.22 7.87 -51.93 -0.41 -0.19 16 30 H 0.04 0.23 8.08 -51.93 -0.42 -0.19 16 31 H 0.07 0.44 7.87 -51.93 -0.41 0.03 16 32 H 0.08 0.79 8.14 -51.92 -0.42 0.37 16 33 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.19 2.33 7.15 -52.49 -0.38 1.96 16 35 H 0.40 6.38 7.18 -40.82 -0.29 6.08 16 36 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 37 H 0.08 1.52 8.14 -51.93 -0.42 1.10 16 38 H 0.05 0.82 8.14 -51.92 -0.42 0.40 16 39 H 0.08 1.35 8.10 -51.93 -0.42 0.93 16 40 H 0.03 0.66 8.14 -51.93 -0.42 0.23 16 41 H 0.07 1.75 7.36 -51.93 -0.38 1.37 16 42 H 0.25 7.22 8.31 -40.82 -0.34 6.88 16 LS Contribution 371.05 15.07 5.59 5.59 Total: -1.00 -33.68 371.05 -8.71 -42.39 By element: Atomic # 1 Polarization: 8.34 SS G_CDS: -6.04 Total: 2.30 kcal Atomic # 6 Polarization: 7.40 SS G_CDS: -0.06 Total: 7.33 kcal Atomic # 7 Polarization: -59.46 SS G_CDS: -0.43 Total: -59.89 kcal Atomic # 8 Polarization: -14.81 SS G_CDS: -0.28 Total: -15.08 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -5.02 Total: 17.01 kcal Atomic # 16 Polarization: 2.82 SS G_CDS: -2.47 Total: 0.35 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -33.68 -8.71 -42.39 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001038246782.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.823 kcal (2) G-P(sol) polarization free energy of solvation -33.679 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.145 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.715 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.394 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.430 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds