Wall clock time and date at job start Tue Mar 31 2020 13:55:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42896 * 113.99919 * 2 1 4 4 H 1.09003 * 109.47587 * 30.00345 * 3 2 1 5 5 C 1.52994 * 109.47440 * 270.00077 * 3 2 1 6 6 C 1.50702 * 109.47176 * 149.99836 * 3 2 1 7 7 N 1.29431 * 124.80559 * 45.02333 * 6 3 2 8 8 C 1.30938 * 117.37113 * 179.97438 * 7 6 3 9 9 C 1.35673 * 114.18624 * 0.02562 * 8 7 6 10 10 C 1.46675 * 126.12704 * 180.02562 * 9 8 7 11 11 O 1.21692 * 119.99801 * 180.02562 * 10 9 8 12 12 N 1.34775 * 120.00173 * 0.02562 * 10 9 8 13 13 C 1.46505 * 119.99912 * 180.02562 * 12 10 9 14 14 C 1.53004 * 109.47031 * 180.02562 * 13 12 10 15 15 H 1.09001 * 112.74037 * 303.76278 * 14 13 12 16 16 C 1.53495 * 113.46495 * 172.94010 * 14 13 12 17 17 C 1.53499 * 83.34501 * 219.15031 * 16 14 13 18 18 N 1.47068 * 113.46557 * 74.50789 * 14 13 12 19 19 C 1.36936 * 136.05631 * 321.63479 * 18 14 13 20 20 H 1.08001 * 120.00282 * 356.08522 * 19 18 14 21 21 C 1.38814 * 119.99816 * 176.08367 * 19 18 14 22 22 N 1.31623 * 120.00077 * 6.68272 * 21 19 18 23 23 Si 1.86800 * 119.99859 * 186.68531 * 21 19 18 24 24 H 1.48508 * 109.46943 * 94.98024 * 23 21 19 25 25 H 1.48498 * 109.46995 * 214.98044 * 23 21 19 26 26 H 1.48493 * 109.47191 * 334.98307 * 23 21 19 27 27 S 1.70955 * 124.80858 * 225.29967 * 6 3 2 28 28 H 1.08999 * 109.47136 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.47162 * 300.00203 * 1 2 3 30 30 H 1.09001 * 109.46870 * 60.00029 * 1 2 3 31 31 H 1.09007 * 109.46628 * 300.00288 * 5 3 2 32 32 H 1.08999 * 109.47284 * 59.99691 * 5 3 2 33 33 H 1.08994 * 109.47561 * 180.02562 * 5 3 2 34 34 H 1.07992 * 122.90801 * 179.97438 * 8 7 6 35 35 H 0.97003 * 120.00476 * 0.02562 * 12 10 9 36 36 H 1.09005 * 109.47197 * 60.00329 * 13 12 10 37 37 H 1.08993 * 109.47214 * 300.00427 * 13 12 10 38 38 H 1.08996 * 114.21295 * 332.74446 * 16 14 13 39 39 H 1.09003 * 114.20204 * 105.36956 * 16 14 13 40 40 H 1.08999 * 113.46845 * 271.29200 * 17 16 14 41 41 H 1.08993 * 113.46655 * 140.84495 * 17 16 14 42 42 H 0.96991 * 120.00054 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3450 1.9994 0.5139 5 6 2.2177 1.7714 -1.4424 6 6 3.3386 1.2639 0.7104 7 7 4.2433 0.3555 0.5329 8 6 5.3476 0.4615 1.2284 9 6 5.3824 1.5363 2.0556 10 6 6.4865 1.9054 2.9480 11 8 6.3987 2.8983 3.6460 12 7 7.5981 1.1449 2.9948 13 6 8.7006 1.5132 3.8865 14 6 9.8319 0.4925 3.7475 15 1 9.5038 -0.5290 3.9404 16 6 11.1042 0.8821 4.5126 17 6 11.8091 0.3126 3.2737 18 7 10.5998 0.6355 2.5014 19 6 10.3139 0.9325 1.1956 20 1 9.2885 1.0667 0.8843 21 6 11.3421 1.0611 0.2719 22 7 12.5781 0.7696 0.6181 23 14 10.9716 1.6479 -1.4624 24 1 11.1895 3.1146 -1.5458 25 1 11.8719 0.9584 -2.4211 26 1 9.5590 1.3375 -1.7988 27 16 3.8613 2.4062 1.8700 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 2.8829 1.0774 -1.9562 32 1 1.2569 1.8014 -1.9563 33 1 2.6614 2.7669 -1.4424 34 1 6.1600 -0.2457 1.1510 35 1 7.6683 0.3536 2.4381 36 1 8.3460 1.5249 4.9172 37 1 9.0698 2.5030 3.6182 38 1 11.2340 1.9560 4.6467 39 1 11.2687 0.3109 5.4263 40 1 12.0084 -0.7569 3.3410 41 1 12.6842 0.8868 2.9699 42 1 13.2965 0.8591 -0.0274 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001038246783.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:55:49 Heat of formation + Delta-G solvation = 26.349264 kcal Electronic energy + Delta-G solvation = -24886.533752 eV Core-core repulsion = 21189.057047 eV Total energy + Delta-G solvation = -3697.476706 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 325.125 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.25709 -39.27764 -38.30741 -37.96129 -34.19757 -32.78990 -32.24813 -30.25050 -28.07150 -27.53673 -27.05464 -25.99854 -23.51126 -23.21065 -22.33679 -21.28539 -19.71869 -19.16137 -18.49900 -17.55283 -16.65301 -16.42908 -15.95126 -15.71157 -15.40754 -15.32275 -14.83982 -14.52089 -14.16212 -14.08280 -13.70445 -13.49775 -13.26852 -13.09050 -12.92484 -12.61155 -12.07467 -11.95358 -11.70225 -11.54236 -11.38023 -11.19812 -11.04128 -10.79335 -10.61785 -10.43376 -10.13577 -9.92590 -9.86375 -9.59214 -9.54969 -9.31915 -9.10885 -8.79852 -8.65799 -6.95084 -5.81592 -3.13574 0.11987 0.95190 1.50041 2.40902 3.29617 3.36640 3.40784 3.42698 3.43703 3.52924 3.79467 4.37249 4.39958 4.68291 4.78712 4.90696 4.94159 5.00130 5.11517 5.20882 5.26447 5.34292 5.35337 5.39146 5.52655 5.65516 5.82669 5.86297 5.92456 6.03515 6.27311 6.35523 6.55551 6.63927 6.71327 6.76692 7.18047 7.36231 7.52728 7.53512 7.70726 7.93385 8.34371 8.98323 9.66295 10.58444 11.35754 Molecular weight = 325.12amu Principal moments of inertia in cm(-1) A = 0.014249 B = 0.003296 C = 0.002874 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1964.632155 B = 8491.911024 C = 9739.424097 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.364 6.364 3 C 0.168 3.832 4 H 0.082 0.918 5 C -0.169 4.169 6 C 0.027 3.973 7 N -0.448 5.448 8 C 0.091 3.909 9 C -0.279 4.279 10 C 0.589 3.411 11 O -0.545 6.545 12 N -0.697 5.697 13 C 0.123 3.877 14 C 0.126 3.874 15 H 0.049 0.951 16 C -0.160 4.160 17 C 0.150 3.850 18 N -0.601 5.601 19 C -0.217 4.217 20 H 0.079 0.921 21 C -0.004 4.004 22 N -0.916 5.916 23 Si 0.907 3.093 24 H -0.288 1.288 25 H -0.290 1.290 26 H -0.280 1.280 27 S 0.229 5.771 28 H 0.090 0.910 29 H 0.043 0.957 30 H 0.044 0.956 31 H 0.076 0.924 32 H 0.069 0.931 33 H 0.071 0.929 34 H 0.185 0.815 35 H 0.404 0.596 36 H 0.063 0.937 37 H 0.075 0.925 38 H 0.080 0.920 39 H 0.059 0.941 40 H 0.025 0.975 41 H 0.072 0.928 42 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.396 0.525 2.271 21.522 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.282 6.282 3 C 0.106 3.894 4 H 0.100 0.900 5 C -0.228 4.228 6 C -0.248 4.248 7 N -0.162 5.162 8 C -0.067 4.067 9 C -0.404 4.404 10 C 0.373 3.627 11 O -0.425 6.425 12 N -0.347 5.347 13 C -0.002 4.002 14 C 0.019 3.981 15 H 0.067 0.933 16 C -0.199 4.199 17 C 0.025 3.975 18 N -0.327 5.327 19 C -0.344 4.344 20 H 0.097 0.903 21 C -0.201 4.201 22 N -0.562 5.562 23 Si 0.737 3.263 24 H -0.215 1.215 25 H -0.217 1.217 26 H -0.206 1.206 27 S 0.487 5.513 28 H 0.109 0.891 29 H 0.062 0.938 30 H 0.063 0.937 31 H 0.095 0.905 32 H 0.088 0.912 33 H 0.090 0.910 34 H 0.202 0.798 35 H 0.239 0.761 36 H 0.081 0.919 37 H 0.093 0.907 38 H 0.099 0.901 39 H 0.078 0.922 40 H 0.043 0.957 41 H 0.090 0.910 42 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -21.833 1.630 2.476 22.033 hybrid contribution 0.529 -0.714 -1.452 1.702 sum -21.304 0.916 1.024 21.348 Atomic orbital electron populations 1.22888 0.80704 1.03301 1.00085 1.88105 1.19548 1.25639 1.94920 1.20457 0.87328 0.86261 0.95321 0.90035 1.22271 1.03309 1.02404 0.94799 1.27302 1.00425 0.96364 1.00735 1.66023 1.00783 1.25446 1.23922 1.22326 0.95955 0.96551 0.91895 1.25942 1.01994 1.03264 1.09183 1.16673 0.81292 0.83307 0.81389 1.90816 1.81235 1.26423 1.44025 1.45747 1.15934 1.28929 1.44055 1.21920 0.85550 1.00528 0.92163 1.22441 0.91355 0.95501 0.88850 0.93333 1.23641 0.97618 1.01200 0.97414 1.22055 0.93021 0.96644 0.85801 1.45745 1.03728 1.80227 1.03029 1.18828 0.92657 1.40641 0.82285 0.90288 1.24768 0.95413 1.01744 0.98155 1.69835 0.99034 1.52984 1.34394 0.86190 0.77361 0.78611 0.84164 1.21532 1.21663 1.20580 1.83868 1.07532 1.26347 1.33590 0.89139 0.93828 0.93706 0.90462 0.91202 0.91039 0.79808 0.76063 0.91869 0.90667 0.90149 0.92240 0.95707 0.90957 0.93624 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.18 10.82 101.05 1.09 1.27 16 2 O -0.36 -3.94 10.32 -35.23 -0.36 -4.30 16 3 C 0.17 1.62 3.23 -27.89 -0.09 1.53 16 4 H 0.08 0.56 7.78 -51.93 -0.40 0.16 16 5 C -0.17 -1.43 9.51 37.15 0.35 -1.08 16 6 C 0.03 0.34 6.28 -13.29 -0.08 0.25 16 7 N -0.45 -6.59 10.49 -11.50 -0.12 -6.71 16 8 C 0.09 1.32 10.93 -18.85 -0.21 1.11 16 9 C -0.28 -4.24 6.48 -37.10 -0.24 -4.48 16 10 C 0.59 10.31 7.79 -12.86 -0.10 10.21 16 11 O -0.55 -10.97 16.97 5.20 0.09 -10.88 16 12 N -0.70 -11.86 5.35 -61.62 -0.33 -12.19 16 13 C 0.12 2.18 5.52 -4.04 -0.02 2.15 16 14 C 0.13 2.37 4.10 -72.39 -0.30 2.07 16 15 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 16 C -0.16 -2.84 8.03 -26.22 -0.21 -3.05 16 17 C 0.15 3.38 7.42 -8.50 -0.06 3.32 16 18 N -0.60 -14.39 3.65 -176.98 -0.65 -15.04 16 19 C -0.22 -5.74 10.54 -15.06 -0.16 -5.90 16 20 H 0.08 2.01 7.48 -52.49 -0.39 1.61 16 21 C 0.00 -0.10 5.50 -17.43 -0.10 -0.20 16 22 N -0.92 -26.72 11.52 55.49 0.64 -26.08 16 23 Si 0.91 22.05 29.56 -169.99 -5.02 17.03 16 24 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 25 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 26 H -0.28 -6.64 7.11 56.52 0.40 -6.23 16 27 S 0.23 2.84 23.01 -107.50 -2.47 0.37 16 28 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.04 0.23 8.08 -51.93 -0.42 -0.19 16 30 H 0.04 0.22 7.87 -51.93 -0.41 -0.18 16 31 H 0.08 0.80 8.14 -51.92 -0.42 0.38 16 32 H 0.07 0.44 7.87 -51.93 -0.41 0.03 16 33 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 34 H 0.19 2.39 7.15 -52.49 -0.38 2.01 16 35 H 0.40 6.50 7.02 -40.82 -0.29 6.21 16 36 H 0.06 1.02 8.14 -51.93 -0.42 0.59 16 37 H 0.08 1.51 8.14 -51.93 -0.42 1.09 16 38 H 0.08 1.42 8.12 -51.93 -0.42 1.00 16 39 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 40 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 41 H 0.07 1.83 7.11 -51.93 -0.37 1.46 16 42 H 0.25 7.22 8.31 -40.82 -0.34 6.88 16 LS Contribution 370.27 15.07 5.58 5.58 Total: -1.00 -33.56 370.27 -8.77 -42.33 By element: Atomic # 1 Polarization: 8.68 SS G_CDS: -6.00 Total: 2.68 kcal Atomic # 6 Polarization: 7.34 SS G_CDS: -0.12 Total: 7.22 kcal Atomic # 7 Polarization: -59.56 SS G_CDS: -0.46 Total: -60.02 kcal Atomic # 8 Polarization: -14.91 SS G_CDS: -0.28 Total: -15.18 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -5.02 Total: 17.03 kcal Atomic # 16 Polarization: 2.84 SS G_CDS: -2.47 Total: 0.37 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -33.56 -8.77 -42.33 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001038246783.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.683 kcal (2) G-P(sol) polarization free energy of solvation -33.559 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.124 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.775 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.333 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.349 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds