Wall clock time and date at job start Tue Mar 31 2020 13:56:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42893 * 114.00062 * 2 1 4 4 H 1.08998 * 109.47764 * 330.00476 * 3 2 1 5 5 C 1.53000 * 109.47001 * 90.00527 * 3 2 1 6 6 C 1.50704 * 109.47226 * 210.00220 * 3 2 1 7 7 N 1.28645 * 124.72273 * 135.24142 * 6 3 2 8 8 C 1.33557 * 115.77094 * 180.19040 * 7 6 3 9 9 C 1.47262 * 123.14425 * 179.83141 * 8 7 6 10 10 O 1.21635 * 120.00282 * 179.73275 * 9 8 7 11 11 N 1.34779 * 119.99978 * 359.73043 * 9 8 7 12 12 C 1.46502 * 119.99973 * 179.97438 * 11 9 8 13 13 C 1.53001 * 109.47218 * 180.02562 * 12 11 9 14 14 H 1.08997 * 112.77634 * 56.27900 * 13 12 11 15 15 C 1.53494 * 113.46603 * 187.06031 * 13 12 11 16 16 C 1.53492 * 83.34095 * 140.84733 * 15 13 12 17 17 N 1.47063 * 87.98961 * 333.93094 * 16 15 13 18 18 C 1.36936 * 136.05985 * 207.38373 * 17 16 15 19 19 H 1.08001 * 119.99969 * 173.16974 * 18 17 16 20 20 C 1.38814 * 119.99955 * 353.17158 * 18 17 16 21 21 N 1.31621 * 119.99678 * 5.03689 * 20 18 17 22 22 Si 1.86800 * 119.99880 * 185.04019 * 20 18 17 23 23 H 1.48508 * 109.46943 * 94.98498 * 22 20 18 24 24 H 1.48498 * 109.46995 * 214.98519 * 22 20 18 25 25 H 1.48493 * 109.47191 * 334.98782 * 22 20 18 26 26 C 1.35209 * 113.71380 * 359.56218 * 8 7 6 27 27 S 1.70773 * 124.71876 * 314.97833 * 6 3 2 28 28 H 1.08999 * 109.47285 * 180.02562 * 1 2 3 29 29 H 1.09006 * 109.46306 * 299.99346 * 1 2 3 30 30 H 1.08995 * 109.47073 * 59.99618 * 1 2 3 31 31 H 1.09002 * 109.47144 * 179.97438 * 5 3 2 32 32 H 1.08994 * 109.47314 * 299.99768 * 5 3 2 33 33 H 1.08996 * 109.47246 * 60.00114 * 5 3 2 34 34 H 0.96995 * 119.99692 * 0.02562 * 11 9 8 35 35 H 1.09005 * 109.46958 * 59.99833 * 12 11 9 36 36 H 1.09007 * 109.46840 * 300.00484 * 12 11 9 37 37 H 1.08999 * 114.20581 * 254.43160 * 15 13 12 38 38 H 1.08991 * 114.20856 * 27.06350 * 15 13 12 39 39 H 1.09002 * 113.46997 * 219.14989 * 16 15 13 40 40 H 1.09001 * 113.46852 * 88.71157 * 16 15 13 41 41 H 0.97002 * 119.99494 * 180.02562 * 21 20 18 42 42 H 1.07996 * 125.58706 * 180.26174 * 26 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3450 1.9994 -0.5137 5 6 2.2178 1.7712 1.4425 6 6 3.3387 1.2638 -0.7105 7 7 3.7344 2.1299 -1.5755 8 6 4.9449 1.9171 -2.0983 9 6 5.5548 2.8035 -3.1038 10 8 6.6640 2.5579 -3.5382 11 7 4.8838 3.8869 -3.5427 12 6 5.4908 4.7690 -4.5426 13 6 4.5282 5.9139 -4.8642 14 1 4.2340 6.4789 -3.9797 15 6 4.9980 6.7991 -6.0268 16 6 3.5080 6.7973 -6.3953 17 7 3.3915 5.5051 -5.7030 18 6 2.5839 4.4035 -5.8005 19 1 2.7985 3.5229 -5.2131 20 6 1.4896 4.4185 -6.6544 21 7 1.2845 5.4522 -7.4431 22 14 0.3081 2.9720 -6.6840 23 1 -0.8388 3.2511 -5.7828 24 1 -0.1886 2.7668 -8.0684 25 1 1.0123 1.7482 -6.2243 26 6 5.5604 0.8151 -1.6138 27 16 4.5308 0.0640 -0.4745 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3632 0.5138 0.8901 30 1 -0.3633 0.5139 -0.8899 31 1 2.6616 2.7668 1.4425 32 1 1.2571 1.8013 1.9564 33 1 2.8831 1.0773 1.9562 34 1 3.9994 4.0829 -3.1960 35 1 5.6973 4.2016 -5.4501 36 1 6.4220 5.1772 -4.1495 37 1 5.3815 7.7724 -5.7208 38 1 5.6399 6.2897 -6.7454 39 1 3.3262 6.7329 -7.4681 40 1 2.9420 7.5977 -5.9187 41 1 0.5195 5.4628 -8.0395 42 1 6.5419 0.4667 -1.8994 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001038252000.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:56:01 Heat of formation + Delta-G solvation = 22.737669 kcal Electronic energy + Delta-G solvation = -25324.887222 eV Core-core repulsion = 21627.253905 eV Total energy + Delta-G solvation = -3697.633316 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 325.125 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.44804 -38.98848 -38.32492 -37.74800 -34.04798 -32.73737 -32.19454 -29.82191 -28.25053 -27.81198 -27.14897 -25.54361 -23.67753 -23.44818 -21.80637 -21.04910 -19.85320 -19.29203 -18.61380 -16.82745 -16.62736 -16.49470 -16.19061 -15.72041 -15.34474 -15.27348 -14.85498 -14.40829 -14.12796 -13.78135 -13.71422 -13.29652 -13.16524 -12.97792 -12.86728 -12.58918 -12.00387 -11.96280 -11.85902 -11.54092 -11.35894 -11.07482 -10.97296 -10.77770 -10.55453 -10.19438 -10.06518 -9.93001 -9.82995 -9.77261 -9.70895 -9.20926 -9.02811 -8.79862 -8.50207 -6.87027 -5.76829 -3.07945 0.44418 1.13984 1.57121 1.97459 3.09152 3.38171 3.44262 3.46253 3.56744 3.63506 4.12682 4.45355 4.59552 4.77542 4.86399 5.03322 5.12338 5.15407 5.19675 5.26738 5.34906 5.40864 5.43462 5.44819 5.57257 5.71253 5.78193 5.83783 5.93574 6.10887 6.32340 6.41709 6.61120 6.72148 6.73445 6.88824 7.25434 7.34218 7.39363 7.60134 7.95998 7.98901 8.52062 9.05387 9.71730 10.64901 11.41075 Molecular weight = 325.12amu Principal moments of inertia in cm(-1) A = 0.010669 B = 0.004247 C = 0.003383 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2623.829356 B = 6591.927042 C = 8274.928243 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.383 6.383 3 C 0.161 3.839 4 H 0.097 0.903 5 C -0.168 4.168 6 C 0.020 3.980 7 N -0.429 5.429 8 C 0.018 3.982 9 C 0.588 3.412 10 O -0.547 6.547 11 N -0.692 5.692 12 C 0.120 3.880 13 C 0.126 3.874 14 H 0.049 0.951 15 C -0.161 4.161 16 C 0.155 3.845 17 N -0.601 5.601 18 C -0.211 4.211 19 H 0.081 0.919 20 C -0.006 4.006 21 N -0.917 5.917 22 Si 0.905 3.095 23 H -0.289 1.289 24 H -0.291 1.291 25 H -0.281 1.281 26 C -0.233 4.233 27 S 0.238 5.762 28 H 0.090 0.910 29 H 0.046 0.954 30 H 0.049 0.951 31 H 0.075 0.925 32 H 0.071 0.929 33 H 0.067 0.933 34 H 0.413 0.587 35 H 0.073 0.927 36 H 0.062 0.938 37 H 0.058 0.942 38 H 0.079 0.921 39 H 0.068 0.932 40 H 0.027 0.973 41 H 0.253 0.747 42 H 0.190 0.810 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.205 -7.730 18.151 19.987 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.301 6.301 3 C 0.100 3.900 4 H 0.115 0.885 5 C -0.226 4.226 6 C -0.260 4.260 7 N -0.146 5.146 8 C -0.118 4.118 9 C 0.371 3.629 10 O -0.426 6.426 11 N -0.341 5.341 12 C -0.004 4.004 13 C 0.019 3.981 14 H 0.066 0.934 15 C -0.200 4.200 16 C 0.029 3.971 17 N -0.327 5.327 18 C -0.339 4.339 19 H 0.099 0.901 20 C -0.203 4.203 21 N -0.564 5.564 22 Si 0.735 3.265 23 H -0.217 1.217 24 H -0.217 1.217 25 H -0.206 1.206 26 C -0.375 4.375 27 S 0.495 5.505 28 H 0.109 0.891 29 H 0.064 0.936 30 H 0.068 0.932 31 H 0.094 0.906 32 H 0.090 0.910 33 H 0.086 0.914 34 H 0.249 0.751 35 H 0.091 0.909 36 H 0.080 0.920 37 H 0.077 0.923 38 H 0.098 0.902 39 H 0.086 0.914 40 H 0.044 0.956 41 H 0.063 0.937 42 H 0.207 0.793 Dipole moment (debyes) X Y Z Total from point charges 3.510 -8.677 18.159 20.429 hybrid contribution -1.081 0.168 -0.617 1.256 sum 2.429 -8.508 17.543 19.648 Atomic orbital electron populations 1.22869 0.79713 1.03266 1.00662 1.87878 1.20730 1.26366 1.95127 1.20314 0.88478 0.86234 0.94944 0.88543 1.22287 1.03276 1.02460 0.94599 1.26717 1.01947 0.96592 1.00717 1.66856 1.12659 1.27224 1.07846 1.20490 0.91197 0.97859 1.02213 1.17038 0.84718 0.80605 0.80555 1.90777 1.19559 1.73367 1.58908 1.45823 1.21237 1.25117 1.41931 1.21891 0.95969 0.91465 0.91123 1.22423 0.88897 0.92320 0.94493 0.93371 1.23679 0.99768 0.98167 0.98411 1.21966 0.88760 0.87313 0.99049 1.45659 1.35856 1.14531 1.36611 1.18892 1.03460 0.90191 1.21324 0.90107 1.24788 0.98339 0.97729 0.99422 1.69850 1.30146 1.30038 1.26365 0.86199 0.81461 0.81842 0.76989 1.21663 1.21706 1.20627 1.26718 1.07178 1.00136 1.03513 1.82773 1.05709 1.26848 1.35155 0.89121 0.93571 0.93229 0.90626 0.91000 0.91381 0.75093 0.90903 0.92022 0.92315 0.90195 0.91374 0.95556 0.93733 0.79294 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 10.82 101.05 1.09 1.34 16 2 O -0.38 -4.09 10.17 -35.23 -0.36 -4.45 16 3 C 0.16 1.74 3.23 -27.88 -0.09 1.65 16 4 H 0.10 1.07 7.79 -51.93 -0.40 0.67 16 5 C -0.17 -1.36 9.51 37.16 0.35 -1.00 16 6 C 0.02 0.26 6.30 -13.61 -0.09 0.17 16 7 N -0.43 -6.84 10.12 -8.51 -0.09 -6.93 16 8 C 0.02 0.30 6.70 -84.53 -0.57 -0.27 16 9 C 0.59 11.18 7.80 -12.59 -0.10 11.08 16 10 O -0.55 -11.44 16.71 5.25 0.09 -11.35 16 11 N -0.69 -13.17 5.33 -61.43 -0.33 -13.50 16 12 C 0.12 2.28 5.52 -4.04 -0.02 2.26 16 13 C 0.13 2.52 4.10 -72.41 -0.30 2.22 16 14 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 15 C -0.16 -2.97 8.03 -26.22 -0.21 -3.18 16 16 C 0.15 3.59 7.31 -8.53 -0.06 3.53 16 17 N -0.60 -15.00 3.65 -177.04 -0.65 -15.65 16 18 C -0.21 -5.84 10.54 -15.06 -0.16 -6.00 16 19 H 0.08 2.22 7.61 -52.49 -0.40 1.82 16 20 C -0.01 -0.17 5.50 -17.43 -0.10 -0.27 16 21 N -0.92 -27.29 11.63 55.49 0.65 -26.64 16 22 Si 0.90 22.54 29.56 -169.99 -5.02 17.52 16 23 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 24 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 25 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 26 C -0.23 -3.16 10.62 29.65 0.31 -2.84 16 27 S 0.24 2.60 22.74 -107.50 -2.44 0.16 16 28 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.05 0.29 7.87 -51.93 -0.41 -0.12 16 30 H 0.05 0.42 8.08 -51.93 -0.42 0.00 16 31 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 32 H 0.07 0.47 7.87 -51.93 -0.41 0.06 16 33 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 34 H 0.41 7.97 7.99 -40.82 -0.33 7.64 16 35 H 0.07 1.54 8.14 -51.93 -0.42 1.12 16 36 H 0.06 1.06 8.14 -51.93 -0.42 0.63 16 37 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 38 H 0.08 1.46 8.12 -51.93 -0.42 1.04 16 39 H 0.07 1.75 7.32 -51.93 -0.38 1.37 16 40 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 41 H 0.25 7.31 8.31 -40.82 -0.34 6.97 16 42 H 0.19 2.28 8.03 -52.49 -0.42 1.86 16 LS Contribution 371.32 15.07 5.60 5.60 Total: -1.00 -33.42 371.32 -8.59 -42.01 By element: Atomic # 1 Polarization: 10.65 SS G_CDS: -6.11 Total: 4.55 kcal Atomic # 6 Polarization: 8.61 SS G_CDS: 0.07 Total: 8.69 kcal Atomic # 7 Polarization: -62.30 SS G_CDS: -0.41 Total: -62.71 kcal Atomic # 8 Polarization: -15.53 SS G_CDS: -0.27 Total: -15.80 kcal Atomic # 14 Polarization: 22.54 SS G_CDS: -5.02 Total: 17.52 kcal Atomic # 16 Polarization: 2.60 SS G_CDS: -2.44 Total: 0.16 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -33.42 -8.59 -42.01 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001038252000.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.751 kcal (2) G-P(sol) polarization free energy of solvation -33.423 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.328 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.590 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.014 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.738 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds