Wall clock time and date at job start Tue Mar 31 2020 15:26:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35962 * 117.00026 * 2 1 4 4 C 1.37569 * 120.82845 * 179.97438 * 3 2 1 5 5 C 1.38032 * 114.25213 * 180.02562 * 4 3 2 6 6 C 1.47116 * 127.76183 * 179.97438 * 5 4 3 7 7 O 1.21627 * 119.99914 * 359.97438 * 6 5 4 8 8 N 1.34776 * 120.00371 * 180.02562 * 6 5 4 9 9 C 1.46496 * 120.00539 * 179.97438 * 8 6 5 10 10 H 1.09000 * 109.46684 * 34.99724 * 9 8 6 11 11 C 1.52997 * 109.47079 * 274.99997 * 9 8 6 12 12 C 1.53006 * 109.47164 * 179.97438 * 11 9 8 13 13 C 1.52999 * 109.46626 * 59.99702 * 12 11 9 14 14 C 1.52997 * 109.47592 * 300.00035 * 13 12 11 15 15 C 1.52996 * 109.47165 * 60.00300 * 14 13 12 16 16 H 1.08996 * 109.47134 * 59.99508 * 15 14 13 17 17 N 1.46500 * 109.47249 * 180.02562 * 15 14 13 18 18 C 1.36939 * 119.99555 * 274.99674 * 17 15 14 19 19 H 1.07992 * 120.00171 * 359.97438 * 18 17 15 20 20 C 1.38817 * 119.99845 * 180.02562 * 18 17 15 21 21 N 1.31611 * 119.99783 * 180.02562 * 20 18 17 22 22 Si 1.86800 * 119.99694 * 359.97438 * 20 18 17 23 23 H 1.48500 * 109.47062 * 90.00646 * 22 20 18 24 24 H 1.48504 * 109.46962 * 210.00373 * 22 20 18 25 25 H 1.48499 * 109.47331 * 330.00133 * 22 20 18 26 26 S 1.77233 * 104.48011 * 0.23633 * 5 4 3 27 27 N 1.30360 * 120.82519 * 0.02562 * 3 2 1 28 28 H 1.09003 * 109.46800 * 60.00458 * 1 2 3 29 29 H 1.08998 * 109.47019 * 180.02562 * 1 2 3 30 30 H 1.08993 * 109.47482 * 300.00480 * 1 2 3 31 31 H 1.08004 * 122.87286 * 359.97438 * 4 3 2 32 32 H 0.97008 * 119.99907 * 359.97438 * 8 6 5 33 33 H 1.09001 * 109.46922 * 59.99748 * 11 9 8 34 34 H 1.09000 * 109.47140 * 299.99448 * 11 9 8 35 35 H 1.08993 * 109.46955 * 180.02562 * 12 11 9 36 36 H 1.09000 * 109.47050 * 300.00004 * 12 11 9 37 37 H 1.09000 * 109.47160 * 60.00369 * 13 12 11 38 38 H 1.09002 * 109.46719 * 180.02562 * 13 12 11 39 39 H 1.09000 * 109.47140 * 300.00346 * 14 13 12 40 40 H 1.09001 * 109.47375 * 180.02562 * 14 13 12 41 41 H 0.96992 * 120.00233 * 95.00296 * 17 15 14 42 42 H 0.97006 * 119.99876 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2114 0.0000 4 6 3.4189 1.3033 0.0005 5 6 3.9005 2.5968 0.0010 6 6 5.3049 3.0352 0.0022 7 8 6.1992 2.2110 0.0033 8 7 5.6004 4.3502 0.0030 9 6 6.9988 4.7868 0.0047 10 1 7.5970 4.0917 -0.5843 11 6 7.5215 4.8182 1.4423 12 6 8.9822 5.2736 1.4441 13 6 9.0805 6.6736 0.8348 14 6 8.5578 6.6422 -0.6027 15 6 7.0972 6.1868 -0.6045 16 1 6.4991 6.8821 -0.0155 17 7 6.5968 6.1562 -1.9811 18 6 6.1047 7.2974 -2.5562 19 1 6.0851 8.2198 -1.9949 20 6 5.6301 7.2683 -3.8604 21 7 5.1576 8.3652 -4.4133 22 14 5.6635 5.6726 -4.8309 23 1 4.3924 4.9355 -4.6155 24 1 5.8211 5.9755 -6.2762 25 1 6.8033 4.8383 -4.3729 26 16 2.4470 3.6109 0.0078 27 7 1.3521 2.3148 0.0005 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3634 0.5139 0.8899 31 1 4.0643 0.4373 0.0014 32 1 4.8870 5.0076 0.0025 33 1 7.4517 3.8207 1.8761 34 1 6.9232 5.5133 2.0314 35 1 9.3546 5.2955 2.4681 36 1 9.5802 4.5782 0.8551 37 1 8.4824 7.3690 1.4238 38 1 10.1212 6.9979 0.8357 39 1 9.1559 5.9468 -1.1917 40 1 8.6283 7.6395 -1.0369 41 1 6.6141 5.3277 -2.4850 42 1 4.8263 8.3450 -5.3248 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001085201726.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:26:59 Heat of formation + Delta-G solvation = -21.870600 kcal Electronic energy + Delta-G solvation = -25533.134336 eV Core-core repulsion = 21833.566660 eV Total energy + Delta-G solvation = -3699.567676 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 325.125 amu Computer time = 1.99 seconds Orbital eigenvalues (eV) -40.43758 -39.90341 -38.09379 -36.55766 -34.25117 -34.05169 -31.59603 -31.39180 -29.59013 -28.48256 -27.99517 -25.08650 -23.53924 -22.62272 -21.21374 -21.07007 -20.26396 -19.60419 -18.66175 -17.96256 -17.63023 -16.45054 -16.41559 -16.05221 -15.22157 -15.02178 -14.86922 -14.46894 -14.17878 -13.78135 -13.58024 -13.55412 -13.44459 -13.21820 -12.69431 -12.40373 -12.36407 -12.26207 -11.60233 -11.42885 -11.34676 -11.06797 -11.03827 -10.96845 -10.91797 -10.68584 -10.43244 -10.17779 -10.12845 -9.89736 -9.81270 -9.65003 -9.02135 -8.91552 -8.55517 -7.35820 -5.83694 -3.20166 -0.00387 1.01690 1.38159 2.05946 2.69542 3.01803 3.25110 3.33891 3.38458 3.42923 4.43120 4.53709 4.77410 4.83693 4.88673 4.97658 4.98224 5.05735 5.17506 5.28314 5.33900 5.41546 5.50155 5.52623 5.60368 5.67969 5.79142 5.84170 5.88603 5.98386 6.13972 6.25706 6.31613 6.35257 6.38631 6.59806 6.75220 6.78575 6.89887 7.47456 7.90802 8.08625 8.34858 9.12499 9.85383 10.04113 11.34168 Molecular weight = 325.12amu Principal moments of inertia in cm(-1) A = 0.010646 B = 0.004493 C = 0.003467 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2629.387146 B = 6230.711290 C = 8073.871913 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.296 6.296 3 C 0.302 3.698 4 C -0.134 4.134 5 C -0.179 4.179 6 C 0.592 3.408 7 O -0.522 6.522 8 N -0.698 5.698 9 C 0.137 3.863 10 H 0.089 0.911 11 C -0.125 4.125 12 C -0.114 4.114 13 C -0.120 4.120 14 C -0.133 4.133 15 C 0.177 3.823 16 H 0.062 0.938 17 N -0.747 5.747 18 C -0.246 4.246 19 H 0.092 0.908 20 C 0.011 3.989 21 N -0.930 5.930 22 Si 0.876 3.124 23 H -0.284 1.284 24 H -0.290 1.290 25 H -0.277 1.277 26 S 0.307 5.693 27 N -0.513 5.513 28 H 0.061 0.939 29 H 0.101 0.899 30 H 0.060 0.940 31 H 0.177 0.823 32 H 0.406 0.594 33 H 0.065 0.935 34 H 0.066 0.934 35 H 0.060 0.940 36 H 0.062 0.938 37 H 0.060 0.940 38 H 0.057 0.943 39 H 0.057 0.943 40 H 0.072 0.928 41 H 0.362 0.638 42 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.945 -12.184 13.675 18.551 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.202 6.202 3 C 0.089 3.911 4 C -0.171 4.171 5 C -0.311 4.311 6 C 0.375 3.625 7 O -0.399 6.399 8 N -0.348 5.348 9 C 0.032 3.968 10 H 0.107 0.893 11 C -0.164 4.164 12 C -0.152 4.152 13 C -0.158 4.158 14 C -0.174 4.174 15 C 0.067 3.933 16 H 0.080 0.920 17 N -0.390 5.390 18 C -0.376 4.376 19 H 0.110 0.890 20 C -0.185 4.185 21 N -0.577 5.577 22 Si 0.706 3.294 23 H -0.210 1.210 24 H -0.217 1.217 25 H -0.203 1.203 26 S 0.457 5.543 27 N -0.355 5.355 28 H 0.080 0.920 29 H 0.120 0.880 30 H 0.079 0.921 31 H 0.194 0.806 32 H 0.241 0.759 33 H 0.084 0.916 34 H 0.084 0.916 35 H 0.079 0.921 36 H 0.081 0.919 37 H 0.079 0.921 38 H 0.076 0.924 39 H 0.075 0.925 40 H 0.091 0.909 41 H 0.195 0.805 42 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -3.766 -11.170 13.601 17.998 hybrid contribution 0.285 -2.153 -1.015 2.397 sum -3.481 -13.324 12.586 18.656 Atomic orbital electron populations 1.22980 0.76724 1.03553 1.02654 1.86299 1.22989 1.22573 1.88336 1.19889 0.89775 0.85277 0.96132 1.20715 0.92305 0.98530 1.05595 1.26097 0.99684 0.97791 1.07519 1.16651 0.85160 0.83292 0.77380 1.90824 1.46605 1.52645 1.49875 1.45861 1.10114 1.05820 1.72976 1.21507 0.80389 0.98091 0.96783 0.89296 1.21881 0.96687 1.01676 0.96133 1.21480 0.95765 0.97361 1.00596 1.21587 1.00685 0.96391 0.97186 1.22182 0.97530 1.02634 0.95011 1.20459 0.93885 0.92083 0.86841 0.91984 1.42807 1.75566 1.09878 1.10711 1.19025 1.33109 0.88953 0.96492 0.89013 1.24618 1.00704 0.96297 0.96867 1.69686 1.47210 1.26163 1.14671 0.86685 0.77965 0.84521 0.80185 1.21031 1.21668 1.20304 1.85254 0.89697 1.11286 1.68098 1.76406 1.27051 1.01216 1.30854 0.92039 0.88034 0.92112 0.80572 0.75897 0.91646 0.91558 0.92097 0.91908 0.92082 0.92412 0.92463 0.90927 0.80541 0.92995 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 36. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.30 10.43 101.05 1.05 1.36 16 2 O -0.30 -3.44 10.51 -19.62 -0.21 -3.64 16 3 C 0.30 3.94 7.36 -18.42 -0.14 3.81 16 4 C -0.13 -1.74 10.09 -39.90 -0.40 -2.15 16 5 C -0.18 -2.49 6.74 -36.06 -0.24 -2.74 16 6 C 0.59 9.19 7.77 -12.66 -0.10 9.10 16 7 O -0.52 -9.30 16.61 5.25 0.09 -9.21 16 8 N -0.70 -10.40 4.91 -54.98 -0.27 -10.67 16 9 C 0.14 2.07 1.97 -67.93 -0.13 1.93 16 10 H 0.09 1.49 7.58 -51.93 -0.39 1.10 16 11 C -0.12 -1.55 5.49 -26.73 -0.15 -1.70 16 12 C -0.11 -1.30 5.92 -26.73 -0.16 -1.46 16 13 C -0.12 -1.48 5.92 -26.73 -0.16 -1.64 16 14 C -0.13 -2.09 5.50 -26.73 -0.15 -2.24 16 15 C 0.18 3.04 2.29 -67.93 -0.16 2.88 16 16 H 0.06 1.07 8.08 -51.93 -0.42 0.65 16 17 N -0.75 -16.27 4.76 -53.43 -0.25 -16.52 16 18 C -0.25 -6.45 10.41 -15.06 -0.16 -6.61 16 19 H 0.09 2.57 8.06 -52.49 -0.42 2.15 16 20 C 0.01 0.32 5.50 -17.43 -0.10 0.23 16 21 N -0.93 -28.19 13.97 55.49 0.78 -27.42 16 22 Si 0.88 21.79 27.73 -169.99 -4.71 17.08 16 23 H -0.28 -7.05 7.11 56.52 0.40 -6.65 16 24 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16 25 H -0.28 -6.63 6.52 56.52 0.37 -6.26 16 26 S 0.31 4.03 23.27 -107.50 -2.50 1.52 16 27 N -0.51 -6.99 11.03 29.19 0.32 -6.66 16 28 H 0.06 0.54 8.13 -51.93 -0.42 0.12 16 29 H 0.10 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.06 0.50 8.12 -51.93 -0.42 0.08 16 31 H 0.18 2.07 8.06 -52.48 -0.42 1.65 16 32 H 0.41 5.76 7.96 -40.82 -0.33 5.43 16 33 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 34 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 35 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 37 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 38 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 39 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 40 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 41 H 0.36 8.14 5.66 -40.82 -0.23 7.91 16 42 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 LS Contribution 362.17 15.07 5.46 5.46 Total: -1.00 -31.26 362.17 -8.31 -39.58 By element: Atomic # 1 Polarization: 15.75 SS G_CDS: -6.03 Total: 9.72 kcal Atomic # 6 Polarization: 1.75 SS G_CDS: -0.98 Total: 0.77 kcal Atomic # 7 Polarization: -61.84 SS G_CDS: 0.57 Total: -61.27 kcal Atomic # 8 Polarization: -12.74 SS G_CDS: -0.12 Total: -12.86 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -4.71 Total: 17.08 kcal Atomic # 16 Polarization: 4.03 SS G_CDS: -2.50 Total: 1.52 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -31.26 -8.31 -39.58 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085201726.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.706 kcal (2) G-P(sol) polarization free energy of solvation -31.262 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.556 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.315 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.577 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.871 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.99 seconds