Wall clock time and date at job start Tue Mar 31 2020 15:25:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.35675 * 117.00248 * 2 1 4 4 C 1.38915 * 119.68314 * 179.72716 * 3 2 1 5 5 C 1.38384 * 119.11112 * 179.75573 * 4 3 2 6 6 C 1.38826 * 118.48284 * 0.51069 * 5 4 3 7 7 C 1.38048 * 119.28948 * 359.72773 * 6 5 4 8 8 C 1.50704 * 119.58253 * 179.97438 * 7 6 5 9 9 N 1.46906 * 109.46705 * 95.02470 * 8 7 6 10 10 C 1.46893 * 110.99909 * 180.02562 * 9 8 7 11 11 C 1.52995 * 109.47245 * 180.02562 * 10 9 8 12 12 N 1.46504 * 109.47406 * 180.02562 * 11 10 9 13 13 C 1.34779 * 120.00043 * 179.97438 * 12 11 10 14 14 O 1.21283 * 120.00054 * 359.97438 * 13 12 11 15 15 C 1.50701 * 119.99775 * 179.97438 * 13 12 11 16 16 S 1.81006 * 109.46981 * 180.02562 * 15 13 12 17 17 C 1.76197 * 99.99719 * 180.02562 * 16 15 13 18 18 H 1.08000 * 120.00280 * 359.97438 * 17 16 15 19 19 C 1.38802 * 119.99755 * 179.97438 * 17 16 15 20 20 N 1.31631 * 120.00092 * 0.02562 * 19 17 16 21 21 Si 1.86802 * 119.99928 * 179.97438 * 19 17 16 22 22 H 1.48498 * 109.46890 * 0.02562 * 21 19 17 23 23 H 1.48497 * 109.46582 * 120.00553 * 21 19 17 24 24 H 1.48497 * 109.47071 * 240.00143 * 21 19 17 25 25 N 1.31963 * 120.83448 * 0.02569 * 7 6 5 26 26 H 1.08996 * 109.47087 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.46864 * 300.00240 * 1 2 3 28 28 H 1.08999 * 109.46969 * 59.99622 * 1 2 3 29 29 H 1.08003 * 120.45041 * 0.02562 * 4 3 2 30 30 H 1.07999 * 120.75530 * 180.24165 * 5 4 3 31 31 H 1.08003 * 120.35720 * 179.75404 * 6 5 4 32 32 H 1.08998 * 109.47460 * 215.02436 * 8 7 6 33 33 H 1.08997 * 109.47373 * 335.03060 * 8 7 6 34 34 H 1.00896 * 111.00145 * 303.95508 * 9 8 7 35 35 H 1.09003 * 109.47101 * 300.00434 * 10 9 8 36 36 H 1.09000 * 109.47102 * 60.00034 * 10 9 8 37 37 H 1.09003 * 109.47150 * 300.00067 * 11 10 9 38 38 H 1.09000 * 109.47318 * 59.99829 * 11 10 9 39 39 H 0.96997 * 119.99914 * 359.97438 * 12 11 10 40 40 H 1.08997 * 109.47297 * 299.99766 * 15 13 12 41 41 H 1.09000 * 109.47132 * 59.99887 * 15 13 12 42 42 H 0.96996 * 120.00331 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0451 1.2088 0.0000 4 6 3.4327 1.2738 0.0057 5 6 4.0487 2.5130 0.0005 6 6 3.2507 3.6490 0.0006 7 6 1.8773 3.5096 0.0000 8 6 1.0048 4.7384 0.0007 9 7 0.6228 5.0683 -1.3790 10 6 -0.2297 6.2639 -1.4175 11 6 -0.6065 6.5751 -2.8673 12 7 -1.4562 7.7679 -2.9059 13 6 -1.9123 8.2326 -4.0860 14 8 -1.6188 7.6635 -5.1161 15 6 -2.7868 9.4593 -4.1255 16 16 -3.2325 9.8274 -5.8408 17 6 -4.2242 11.2634 -5.5977 18 1 -4.3874 11.6445 -4.6005 19 6 -4.7957 11.9048 -6.6880 20 7 -4.5972 11.4400 -7.9034 21 14 -5.8476 13.4268 -6.4302 22 1 -5.9154 13.7419 -4.9807 23 1 -5.2462 14.5730 -7.1581 24 1 -7.2168 13.1755 -6.9472 25 7 1.3188 2.3140 0.0000 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8899 29 1 4.0230 0.3694 0.0098 30 1 5.1256 2.5944 0.0009 31 1 3.6996 4.6313 0.0006 32 1 0.1080 4.5470 0.5900 33 1 1.5538 5.5737 0.4352 34 1 1.4381 5.1870 -1.9613 35 1 -1.1349 6.0836 -0.8378 36 1 0.3112 7.1096 -0.9929 37 1 0.2986 6.7553 -3.4474 38 1 -1.1476 5.7293 -3.2916 39 1 -1.6906 8.2232 -2.0821 40 1 -3.6921 9.2789 -3.5460 41 1 -2.2459 10.3049 -3.7008 42 1 -4.9968 11.8880 -8.6652 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001123787658.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:25:55 Heat of formation + Delta-G solvation = -36.734493 kcal Electronic energy + Delta-G solvation = -23064.086172 eV Core-core repulsion = 19363.873949 eV Total energy + Delta-G solvation = -3700.212223 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 325.125 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.05136 -39.20159 -38.50470 -36.83353 -34.41853 -32.90792 -32.42598 -31.65458 -29.99584 -28.36436 -27.32829 -25.57563 -25.24228 -23.36204 -22.39177 -22.31788 -20.35622 -18.55428 -17.88781 -17.43158 -16.46134 -16.41521 -16.35595 -16.14915 -15.99681 -15.22064 -14.95078 -14.80367 -14.68308 -14.53606 -13.91538 -13.83825 -13.54601 -13.42805 -13.08452 -12.89812 -12.55933 -12.34088 -12.19248 -12.05527 -11.79520 -11.51490 -11.45466 -11.06892 -11.01681 -10.75736 -10.31003 -9.99631 -9.80445 -9.42229 -9.07645 -8.99081 -8.89065 -8.80445 -8.22580 -6.49599 -6.21503 -3.91976 0.65518 0.87344 2.71630 2.93998 3.10858 3.21703 3.22050 3.29733 3.35205 3.60983 3.72679 4.11511 4.20507 4.33237 4.58127 4.63963 4.67146 4.77171 4.84742 4.94153 5.00231 5.02047 5.03709 5.13707 5.18331 5.22245 5.33110 5.34360 5.51554 5.61576 5.73596 5.76581 5.88828 5.91255 5.98626 6.14050 6.44379 6.61525 6.83295 6.89876 7.49624 7.60082 7.69738 8.35656 8.61809 9.23887 10.85996 Molecular weight = 325.12amu Principal moments of inertia in cm(-1) A = 0.032218 B = 0.001556 C = 0.001534 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 868.882392 B =17992.073214 C =18251.335037 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 O -0.310 6.310 3 C 0.322 3.678 4 C -0.192 4.192 5 C -0.040 4.040 6 C -0.206 4.206 7 C 0.173 3.827 8 C 0.110 3.890 9 N -0.677 5.677 10 C 0.051 3.949 11 C 0.123 3.877 12 N -0.739 5.739 13 C 0.532 3.468 14 O -0.516 6.516 15 C -0.153 4.153 16 S -0.061 6.061 17 C -0.535 4.535 18 H 0.073 0.927 19 C 0.073 3.927 20 N -0.867 5.867 21 Si 0.919 3.081 22 H -0.272 1.272 23 H -0.280 1.280 24 H -0.280 1.280 25 N -0.520 5.520 26 H 0.096 0.904 27 H 0.058 0.942 28 H 0.063 0.937 29 H 0.141 0.859 30 H 0.142 0.858 31 H 0.136 0.864 32 H 0.092 0.908 33 H 0.052 0.948 34 H 0.345 0.655 35 H 0.081 0.919 36 H 0.039 0.961 37 H 0.064 0.936 38 H 0.075 0.925 39 H 0.398 0.602 40 H 0.090 0.910 41 H 0.089 0.911 42 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.155 -18.144 21.942 32.736 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 O -0.217 6.217 3 C 0.143 3.857 4 C -0.213 4.213 5 C -0.065 4.065 6 C -0.227 4.227 7 C 0.035 3.965 8 C -0.020 4.020 9 N -0.309 5.309 10 C -0.078 4.078 11 C -0.002 4.002 12 N -0.394 5.394 13 C 0.318 3.682 14 O -0.390 6.390 15 C -0.304 4.304 16 S 0.166 5.834 17 C -0.684 4.684 18 H 0.091 0.909 19 C -0.136 4.136 20 N -0.503 5.503 21 Si 0.745 3.255 22 H -0.196 1.196 23 H -0.206 1.206 24 H -0.206 1.206 25 N -0.244 5.244 26 H 0.114 0.886 27 H 0.077 0.923 28 H 0.081 0.919 29 H 0.159 0.841 30 H 0.160 0.840 31 H 0.154 0.846 32 H 0.111 0.889 33 H 0.070 0.930 34 H 0.164 0.836 35 H 0.100 0.900 36 H 0.057 0.943 37 H 0.082 0.918 38 H 0.094 0.906 39 H 0.231 0.769 40 H 0.108 0.892 41 H 0.108 0.892 42 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 15.259 -19.877 20.011 32.068 hybrid contribution 0.207 2.640 1.923 3.273 sum 15.466 -17.236 21.934 31.896 Atomic orbital electron populations 1.22888 0.76824 1.03009 1.02814 1.86236 1.23268 1.24454 1.87694 1.19847 0.89354 0.84730 0.91773 1.21102 0.92129 0.99720 1.08370 1.21394 1.00627 0.91147 0.93342 1.21842 0.94090 1.00094 1.06672 1.20691 0.91327 0.91569 0.92890 1.20804 0.98440 0.91765 0.90954 1.60225 1.23694 1.37733 1.09255 1.22106 0.97950 0.90728 0.97030 1.21121 0.95207 0.88411 0.95435 1.45891 1.53727 1.30442 1.09373 1.20298 0.79792 0.85228 0.82873 1.90712 1.56895 1.58599 1.32778 1.23528 1.01089 0.97285 1.08466 1.85420 1.64533 1.35973 0.97485 1.22914 1.35878 1.13550 0.96011 0.90861 1.24999 0.96263 0.97920 0.94440 1.70028 1.42527 1.39518 0.98195 0.86111 0.79577 0.81385 0.78382 1.19631 1.20577 1.20559 1.67089 1.40857 0.98238 1.18171 0.88604 0.92283 0.91857 0.84104 0.83989 0.84605 0.88924 0.92952 0.83627 0.90010 0.94290 0.91788 0.90622 0.76893 0.89173 0.89223 0.92231 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.29 10.38 101.05 1.05 1.34 16 2 O -0.31 -2.95 10.48 -18.73 -0.20 -3.15 16 3 C 0.32 3.14 7.49 -17.12 -0.13 3.02 16 4 C -0.19 -1.44 10.04 -39.28 -0.39 -1.84 16 5 C -0.04 -0.24 10.17 -39.31 -0.40 -0.64 16 6 C -0.21 -1.34 9.71 -39.43 -0.38 -1.72 16 7 C 0.17 1.45 6.29 -82.60 -0.52 0.93 16 8 C 0.11 0.78 5.99 -4.97 -0.03 0.75 16 9 N -0.68 -5.57 6.49 -115.06 -0.75 -6.32 16 10 C 0.05 0.41 5.80 -3.83 -0.02 0.39 16 11 C 0.12 1.42 5.93 -4.04 -0.02 1.39 16 12 N -0.74 -9.65 5.56 -60.29 -0.33 -9.99 16 13 C 0.53 9.96 7.85 -10.98 -0.09 9.87 16 14 O -0.52 -11.89 15.86 5.56 0.09 -11.80 16 15 C -0.15 -3.07 6.16 36.01 0.22 -2.85 16 16 S -0.06 -1.66 20.57 -107.50 -2.21 -3.87 16 17 C -0.54 -15.27 9.50 30.94 0.29 -14.98 16 18 H 0.07 1.98 7.80 -52.49 -0.41 1.57 16 19 C 0.07 2.09 5.49 -17.43 -0.10 1.99 16 20 N -0.87 -26.23 13.22 55.49 0.73 -25.49 16 21 Si 0.92 21.41 29.55 -169.99 -5.02 16.38 16 22 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 23 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 24 H -0.28 -6.42 7.11 56.52 0.40 -6.01 16 25 N -0.52 -5.31 9.13 -9.55 -0.09 -5.40 16 26 H 0.10 0.46 8.14 -51.93 -0.42 0.04 16 27 H 0.06 0.43 8.10 -51.93 -0.42 0.01 16 28 H 0.06 0.52 8.10 -51.93 -0.42 0.10 16 29 H 0.14 0.80 8.06 -52.48 -0.42 0.37 16 30 H 0.14 0.43 8.06 -52.49 -0.42 0.01 16 31 H 0.14 0.58 8.06 -52.48 -0.42 0.15 16 32 H 0.09 0.70 8.14 -51.93 -0.42 0.27 16 33 H 0.05 0.27 8.04 -51.93 -0.42 -0.15 16 34 H 0.35 2.65 8.72 -39.29 -0.34 2.30 16 35 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 36 H 0.04 0.26 8.14 -51.93 -0.42 -0.16 16 37 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 38 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 39 H 0.40 3.89 8.47 -40.82 -0.35 3.55 16 40 H 0.09 1.67 8.14 -51.92 -0.42 1.24 16 41 H 0.09 1.65 8.14 -51.92 -0.42 1.22 16 42 H 0.27 7.50 8.31 -40.82 -0.34 7.16 16 LS Contribution 379.85 15.07 5.72 5.72 Total: -1.00 -36.44 379.85 -8.72 -45.15 By element: Atomic # 1 Polarization: 7.26 SS G_CDS: -6.14 Total: 1.12 kcal Atomic # 6 Polarization: -1.84 SS G_CDS: -0.52 Total: -2.36 kcal Atomic # 7 Polarization: -46.76 SS G_CDS: -0.44 Total: -47.20 kcal Atomic # 8 Polarization: -14.85 SS G_CDS: -0.11 Total: -14.95 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.38 kcal Atomic # 16 Polarization: -1.66 SS G_CDS: -2.21 Total: -3.87 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -36.44 -8.72 -45.15 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001123787658.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.416 kcal (2) G-P(sol) polarization free energy of solvation -36.435 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.019 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.715 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.151 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.734 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds