Wall clock time and date at job start Tue Mar 31 2020 15:06:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.45203 * 109.46940 * 2 1 4 4 C 1.34229 * 116.99689 * 179.97438 * 3 2 1 5 5 O 1.20825 * 120.00404 * 0.02562 * 4 3 2 6 6 C 1.50702 * 120.00011 * 180.02562 * 4 3 2 7 7 N 1.46895 * 109.47271 * 180.02562 * 6 4 3 8 8 C 1.46899 * 111.00112 * 66.04636 * 7 6 4 9 9 C 1.50698 * 109.47175 * 193.95442 * 8 7 6 10 10 H 1.08008 * 119.99852 * 0.02562 * 9 8 7 11 11 C 1.37877 * 120.00341 * 180.02562 * 9 8 7 12 12 N 1.31519 * 119.99437 * 359.97438 * 11 9 8 13 13 Si 1.86799 * 120.00268 * 180.02562 * 11 9 8 14 14 H 1.48501 * 109.47111 * 59.99954 * 13 11 9 15 15 H 1.48501 * 109.47266 * 179.97438 * 13 11 9 16 16 H 1.48491 * 109.47019 * 299.99729 * 13 11 9 17 17 C 1.46902 * 110.99915 * 190.00482 * 7 6 4 18 18 C 1.50699 * 109.47219 * 169.99976 * 17 7 6 19 19 C 1.38643 * 120.39885 * 94.99250 * 18 17 7 20 20 C 1.38601 * 118.56686 * 179.72362 * 19 18 17 21 21 N 1.32268 * 119.20535 * 0.27712 * 20 19 18 22 22 C 1.32544 * 120.73980 * 0.02562 * 21 20 19 23 23 S 1.76199 * 119.22894 * 180.02562 * 22 21 20 24 24 C 1.81000 * 99.99881 * 359.97438 * 23 22 21 25 25 N 1.32247 * 120.39691 * 275.28409 * 18 17 7 26 26 H 1.08999 * 109.47032 * 299.99185 * 1 2 3 27 27 H 1.09000 * 109.47524 * 59.99369 * 1 2 3 28 28 H 1.09000 * 109.47424 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.46882 * 240.00397 * 2 1 3 30 30 H 1.09000 * 109.47524 * 120.00631 * 2 1 3 31 31 H 1.08998 * 109.46732 * 60.00019 * 6 4 3 32 32 H 1.08997 * 109.46944 * 300.00885 * 6 4 3 33 33 H 1.09001 * 109.47031 * 313.95668 * 8 7 6 34 34 H 1.09002 * 109.47042 * 73.95622 * 8 7 6 35 35 H 0.96997 * 119.99525 * 180.02562 * 12 11 9 36 36 H 1.08997 * 109.47540 * 49.99888 * 17 7 6 37 37 H 1.09006 * 109.46692 * 289.99703 * 17 7 6 38 38 H 1.08002 * 120.71921 * 0.02562 * 19 18 17 39 39 H 1.08003 * 120.39776 * 180.25681 * 20 19 18 40 40 H 1.09007 * 109.46830 * 59.99862 * 24 23 22 41 41 H 1.08994 * 109.47302 * 179.97438 * 24 23 22 42 42 H 1.09005 * 109.47251 * 300.00641 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3447 1.5448 0.0005 5 8 4.0807 0.5867 0.0005 6 6 3.9207 2.9374 0.0012 7 7 5.3877 2.8605 0.0010 8 6 5.8842 2.2775 -1.2525 9 6 7.3336 1.8982 -1.0907 10 1 7.8357 2.0724 -0.1503 11 6 8.0190 1.3288 -2.1429 12 7 7.4074 1.1163 -3.2877 13 14 9.8154 0.8579 -1.9420 14 1 9.9469 -0.1373 -0.8477 15 1 10.3175 0.2687 -3.2092 16 1 10.6099 2.0675 -1.6091 17 6 5.9841 4.1816 0.2399 18 6 7.4644 4.0290 0.4771 19 6 8.3619 4.1821 -0.5685 20 6 9.7154 4.0392 -0.3065 21 7 10.1082 3.7574 0.9247 22 6 9.2239 3.6113 1.9012 23 16 9.7913 3.2368 3.5268 24 6 11.5763 3.1822 3.2318 25 7 7.9226 3.7419 1.6839 26 1 -0.3633 0.5137 0.8900 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3634 -1.0276 0.0005 29 1 1.8933 -0.5138 -0.8901 30 1 1.8934 -0.5139 0.8899 31 1 3.5844 3.4692 0.8912 32 1 3.5850 3.4698 -0.8887 33 1 5.3012 1.3894 -1.4962 34 1 5.7873 3.0075 -2.0562 35 1 7.8894 0.7154 -4.0278 36 1 5.5208 4.6365 1.1154 37 1 5.8191 4.8173 -0.6301 38 1 8.0142 4.4125 -1.5647 39 1 10.4407 4.1564 -1.0981 40 1 11.9123 4.1492 2.8571 41 1 12.0920 2.9554 4.1649 42 1 11.7995 2.4099 2.4957 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001140036621.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:06:18 Heat of formation + Delta-G solvation = -15.837837 kcal Electronic energy + Delta-G solvation = -25971.222114 eV Core-core repulsion = 22271.916038 eV Total energy + Delta-G solvation = -3699.306076 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 325.125 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.39900 -39.96987 -37.16193 -35.78476 -33.17146 -32.77083 -31.72380 -31.50267 -28.89816 -28.25706 -27.66992 -24.83468 -23.86004 -23.04569 -22.59537 -21.13342 -20.05965 -17.74016 -17.23506 -16.91990 -16.65544 -16.23581 -15.84471 -15.26648 -14.95091 -14.46635 -14.35073 -14.19380 -14.12157 -13.60881 -13.53310 -13.30242 -13.08182 -12.86114 -12.63627 -12.28911 -12.11705 -12.05259 -11.79011 -11.47020 -11.45089 -11.19552 -10.87203 -10.66169 -10.60193 -10.38795 -10.21311 -10.01573 -9.88086 -9.74500 -9.49401 -8.86630 -8.61936 -8.44734 -7.56526 -7.28060 -6.17441 -4.08363 1.55158 1.71625 1.78398 2.50828 2.76661 2.92406 3.22722 3.29320 3.37021 4.20885 4.36098 4.71741 4.87633 4.99498 4.99853 5.13064 5.14674 5.21386 5.29424 5.36511 5.37236 5.40320 5.53319 5.58807 5.71347 5.77924 5.80830 5.87012 5.95825 5.96914 6.02538 6.06557 6.44831 6.78759 6.90862 7.03295 7.05714 7.58377 7.69437 7.90658 7.94089 8.24857 8.39819 8.58908 8.87166 9.44774 10.92252 Molecular weight = 325.12amu Principal moments of inertia in cm(-1) A = 0.012280 B = 0.004350 C = 0.003659 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2279.561936 B = 6434.720122 C = 7651.314210 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.062 3.938 3 O -0.370 6.370 4 C 0.454 3.546 5 O -0.466 6.466 6 C 0.070 3.930 7 N -0.519 5.519 8 C 0.181 3.819 9 C -0.487 4.487 10 H 0.066 0.934 11 C 0.063 3.937 12 N -0.887 5.887 13 Si 0.876 3.124 14 H -0.278 1.278 15 H -0.287 1.287 16 H -0.260 1.260 17 C 0.119 3.881 18 C 0.219 3.781 19 C -0.139 4.139 20 C 0.120 3.880 21 N -0.526 5.526 22 C 0.268 3.732 23 S -0.030 6.030 24 C -0.137 4.137 25 N -0.488 5.488 26 H 0.064 0.936 27 H 0.065 0.935 28 H 0.075 0.925 29 H 0.068 0.932 30 H 0.067 0.933 31 H 0.106 0.894 32 H 0.068 0.932 33 H 0.051 0.949 34 H -0.005 1.005 35 H 0.263 0.737 36 H 0.083 0.917 37 H 0.051 0.949 38 H 0.144 0.856 39 H 0.157 0.843 40 H 0.085 0.915 41 H 0.097 0.903 42 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.637 6.370 6.534 10.236 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.012 4.012 3 O -0.288 6.288 4 C 0.294 3.706 5 O -0.348 6.348 6 C -0.060 4.060 7 N -0.245 5.245 8 C 0.057 3.943 9 C -0.525 4.525 10 H 0.084 0.916 11 C -0.140 4.140 12 N -0.525 5.525 13 Si 0.704 3.296 14 H -0.203 1.203 15 H -0.213 1.213 16 H -0.185 1.185 17 C -0.010 4.010 18 C 0.067 3.933 19 C -0.164 4.164 20 C -0.045 4.045 21 N -0.244 5.244 22 C -0.107 4.107 23 S 0.202 5.798 24 C -0.307 4.307 25 N -0.205 5.205 26 H 0.083 0.917 27 H 0.084 0.916 28 H 0.094 0.906 29 H 0.086 0.914 30 H 0.085 0.915 31 H 0.124 0.876 32 H 0.086 0.914 33 H 0.069 0.931 34 H 0.012 0.988 35 H 0.073 0.927 36 H 0.101 0.899 37 H 0.069 0.931 38 H 0.162 0.838 39 H 0.174 0.826 40 H 0.104 0.896 41 H 0.116 0.884 42 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -4.466 5.238 8.705 11.098 hybrid contribution 1.165 -0.017 -2.977 3.197 sum -3.301 5.221 5.728 8.424 Atomic orbital electron populations 1.21781 0.93076 1.02596 1.03219 1.22909 0.94816 0.80874 1.02590 1.86453 1.25357 1.31878 1.85156 1.23626 0.80045 0.93200 0.73742 1.90757 1.59609 1.42545 1.41934 1.21422 0.90907 0.90299 1.03339 1.61801 1.01257 1.20249 1.41204 1.20062 0.96682 0.95005 0.82561 1.21317 0.94738 1.38430 0.97988 0.91586 1.24866 0.98338 0.95536 0.95254 1.69939 1.36668 1.43088 1.02834 0.86903 0.85399 0.79941 0.77399 1.20342 1.21297 1.18504 1.20735 0.89038 0.90692 1.00496 1.20980 0.95986 0.88565 0.87790 1.22424 0.94451 0.98735 1.00774 1.22745 0.94789 0.94074 0.92907 1.68460 1.38621 1.16091 1.01238 1.24254 0.88573 0.99777 0.98140 1.85430 1.03624 1.88210 1.02520 1.23423 0.94905 1.06721 1.05631 1.68113 1.13945 1.14226 1.24236 0.91695 0.91638 0.90588 0.91372 0.91474 0.87626 0.91435 0.93138 0.98777 0.92696 0.89893 0.93100 0.83843 0.82573 0.89577 0.88408 0.89525 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.42 10.29 37.16 0.38 -1.03 16 2 C 0.06 0.83 6.19 37.16 0.23 1.06 16 3 O -0.37 -5.82 10.22 -39.25 -0.40 -6.22 16 4 C 0.45 8.49 7.54 36.01 0.27 8.76 16 5 O -0.47 -10.83 14.20 -18.75 -0.27 -11.10 16 6 C 0.07 1.15 5.56 -4.98 -0.03 1.13 16 7 N -0.52 -10.72 4.30 -238.97 -1.03 -11.75 16 8 C 0.18 4.48 4.27 -4.98 -0.02 4.46 16 9 C -0.49 -12.99 5.79 -34.44 -0.20 -13.18 16 10 H 0.07 1.83 4.90 -52.48 -0.26 1.57 16 11 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 12 N -0.89 -25.32 13.29 55.43 0.74 -24.58 16 13 Si 0.88 21.45 28.74 -169.99 -4.89 16.57 16 14 H -0.28 -7.22 7.11 56.52 0.40 -6.82 16 15 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 16 H -0.26 -5.86 5.38 56.52 0.30 -5.55 16 17 C 0.12 2.11 5.32 -4.98 -0.03 2.08 16 18 C 0.22 4.40 4.05 -82.26 -0.33 4.06 16 19 C -0.14 -2.71 6.43 -39.30 -0.25 -2.96 16 20 C 0.12 2.32 9.23 -17.23 -0.16 2.16 16 21 N -0.53 -10.48 9.14 -13.44 -0.12 -10.60 16 22 C 0.27 5.44 7.85 -90.83 -0.71 4.73 16 23 S -0.03 -0.49 22.89 -107.50 -2.46 -2.95 16 24 C -0.14 -1.81 9.62 101.05 0.97 -0.84 16 25 N -0.49 -10.35 10.20 -9.67 -0.10 -10.45 16 26 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 27 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 28 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.07 0.96 8.13 -51.93 -0.42 0.54 16 30 H 0.07 0.90 8.13 -51.93 -0.42 0.48 16 31 H 0.11 1.41 7.93 -51.93 -0.41 0.99 16 32 H 0.07 1.00 8.12 -51.93 -0.42 0.58 16 33 H 0.05 1.41 5.80 -51.93 -0.30 1.11 16 34 H -0.01 -0.14 7.99 -51.93 -0.41 -0.55 16 35 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 36 H 0.08 1.27 7.93 -51.93 -0.41 0.86 16 37 H 0.05 0.80 7.93 -51.93 -0.41 0.39 16 38 H 0.14 2.69 7.99 -52.49 -0.42 2.27 16 39 H 0.16 2.68 7.59 -52.48 -0.40 2.28 16 40 H 0.09 1.10 8.11 -51.91 -0.42 0.68 16 41 H 0.10 0.98 8.14 -51.92 -0.42 0.56 16 42 H 0.09 1.25 8.11 -51.91 -0.42 0.83 16 LS Contribution 359.74 15.07 5.42 5.42 Total: -1.00 -33.49 359.74 -9.14 -42.62 By element: Atomic # 1 Polarization: 7.05 SS G_CDS: -6.06 Total: 0.99 kcal Atomic # 6 Polarization: 12.03 SS G_CDS: 0.03 Total: 12.05 kcal Atomic # 7 Polarization: -56.87 SS G_CDS: -0.51 Total: -57.38 kcal Atomic # 8 Polarization: -16.65 SS G_CDS: -0.67 Total: -17.32 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -4.89 Total: 16.57 kcal Atomic # 16 Polarization: -0.49 SS G_CDS: -2.46 Total: -2.95 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -33.49 -9.14 -42.62 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001140036621.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.786 kcal (2) G-P(sol) polarization free energy of solvation -33.485 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.699 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.139 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.624 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.838 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds