Wall clock time and date at job start Tue Mar 31 2020 14:36:03
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52998 * 1
3 3 C 1.52997 * 109.47182 * 2 1
4 4 H 1.08996 * 109.46979 * 55.00528 * 3 2 1
5 5 C 1.50704 * 109.47087 * 174.99902 * 3 2 1
6 6 H 1.07999 * 119.99674 * 119.99778 * 5 3 2
7 7 C 1.37874 * 120.00069 * 300.00695 * 5 3 2
8 8 N 1.31522 * 120.00191 * 359.97438 * 7 5 3
9 9 Si 1.86800 * 120.00167 * 180.02562 * 7 5 3
10 10 H 1.48503 * 109.46672 * 359.97438 * 9 7 5
11 11 H 1.48495 * 109.47562 * 119.99664 * 9 7 5
12 12 H 1.48504 * 109.46981 * 239.99947 * 9 7 5
13 13 N 1.46493 * 109.47321 * 295.00040 * 3 2 1
14 14 C 1.34779 * 120.00007 * 85.00259 * 13 3 2
15 15 O 1.21276 * 119.99997 * 359.97438 * 14 13 3
16 16 C 1.50706 * 120.00085 * 180.02562 * 14 13 3
17 17 H 1.09000 * 109.46479 * 324.99360 * 16 14 13
18 18 C 1.52992 * 109.47175 * 84.99706 * 16 14 13
19 19 S 1.80995 * 109.46718 * 204.99745 * 16 14 13
20 20 C 1.76208 * 99.99813 * 174.99738 * 19 16 14
21 21 N 1.31539 * 126.45045 * 0.02562 * 20 19 16
22 22 N 1.28419 * 110.50245 * 179.97438 * 21 20 19
23 23 N 1.28908 * 110.33719 * 359.97438 * 22 21 20
24 24 N 1.35390 * 126.45269 * 179.97438 * 20 19 16
25 25 C 1.46502 * 127.38979 * 359.96669 * 24 20 19
26 26 C 1.52995 * 117.50116 * 188.63602 * 25 24 20
27 27 C 1.52997 * 117.49916 * 120.01115 * 25 24 20
28 28 H 1.09005 * 109.47176 * 179.97438 * 1 2 3
29 29 H 1.08998 * 109.46998 * 299.99486 * 1 2 3
30 30 H 1.09002 * 109.47219 * 59.99527 * 1 2 3
31 31 H 1.09007 * 109.46835 * 239.99894 * 2 1 3
32 32 H 1.09002 * 109.47219 * 120.00472 * 2 1 3
33 33 H 0.97000 * 120.00070 * 180.02562 * 8 7 5
34 34 H 0.97001 * 120.00224 * 264.99592 * 13 3 2
35 35 H 1.09004 * 109.47502 * 59.99671 * 18 16 14
36 36 H 1.08998 * 109.47349 * 180.02562 * 18 16 14
37 37 H 1.09007 * 109.47333 * 299.99998 * 18 16 14
38 38 H 1.08996 * 115.54783 * 334.35057 * 25 24 20
39 39 H 1.08995 * 117.50143 * 0.02562 * 26 25 24
40 40 H 1.09008 * 117.49535 * 145.02086 * 26 25 24
41 41 H 1.08994 * 117.50319 * 214.97753 * 27 25 24
42 42 H 1.09001 * 117.50158 * 359.97438 * 27 25 24
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4425 0.0000
4 1 1.6054 1.9814 0.8418
5 6 3.5419 1.4442 0.1239
6 1 4.1472 1.8888 -0.6523
7 6 4.1433 0.8782 1.2279
8 7 3.4062 0.3372 2.1733
9 14 6.0049 0.8810 1.3818
10 1 6.5987 1.5462 0.1942
11 1 6.3990 1.6164 2.6102
12 1 6.4970 -0.5177 1.4628
13 7 1.6525 2.0975 -1.2517
14 6 0.4352 2.6645 -1.3668
15 8 -0.3395 2.6320 -0.4343
16 6 0.0363 3.3378 -2.6548
17 1 0.9081 3.8184 -3.0986
18 6 -0.5200 2.2938 -3.6250
19 16 -1.2324 4.5835 -2.3164
20 6 -1.3961 5.2968 -3.9193
21 7 -0.7332 4.9489 -5.0009
22 7 -1.0935 5.6699 -6.0006
23 7 -1.9967 6.5161 -5.6403
24 7 -2.2284 6.3055 -4.2698
25 6 -3.1700 7.0226 -3.4064
26 6 -4.1483 7.9889 -4.0772
27 6 -2.9790 8.5329 -3.2538
28 1 -0.3634 -1.0277 -0.0005
29 1 -0.3633 0.5137 0.8900
30 1 -0.3634 0.5139 -0.8899
31 1 1.8933 -0.5139 -0.8900
32 1 1.8933 -0.5139 0.8899
33 1 3.8292 -0.0607 2.9502
34 1 2.2720 2.1232 -1.9977
35 1 -1.3918 1.8132 -3.1811
36 1 -0.8081 2.7807 -4.5567
37 1 0.2441 1.5436 -3.8288
38 1 -3.5248 6.4698 -2.5366
39 1 -4.0917 8.0909 -5.1609
40 1 -5.1472 8.0719 -3.6487
41 1 -3.2087 8.9738 -2.2839
42 1 -2.1525 8.9930 -3.7955
RHF calculation, no. of doubly occupied orbitals= 58
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000183799852.mol2 42
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 14:36:03
Heat of formation + Delta-G solvation = 105.734769 kcal
Electronic energy + Delta-G solvation = -25103.783349 eV
Core-core repulsion = 21442.041808 eV
Total energy + Delta-G solvation = -3661.741541 eV
No. of doubly occupied orbitals = 58
Molecular weight
(most abundant/longest-lived isotopes) = 325.131 amu
Computer time = 0.54 seconds
Orbital eigenvalues (eV)
-43.03406 -39.35122 -38.11519 -35.26301 -33.55274 -33.36315 -32.41474 -31.98760
-30.76841 -27.08380 -25.63281 -24.61299 -23.62162 -23.03807 -22.96359 -21.94058
-20.48372 -19.50733 -18.68314 -17.38403 -16.94236 -16.67824 -16.27515 -15.65217
-15.43220 -15.07237 -14.67432 -14.29414 -14.03454 -13.59134 -13.39915 -13.10552
-12.74567 -12.73858 -12.48643 -12.21014 -12.17231 -12.08694 -11.81575 -11.54199
-11.36954 -11.31776 -11.10153 -11.04444 -10.98686 -10.89717 -10.56624 -10.37037
-10.25664 -10.24161 -9.71099 -9.26569 -9.12136 -8.57819 -8.13894 -7.98887
-6.18952 -4.28673 0.53943 0.64710 1.63707 1.74117 2.03386 3.02786
3.11708 3.20363 3.28770 3.31137 3.72893 3.81092 4.09502 4.21743
4.30213 4.40362 4.83264 4.87572 4.96896 5.02669 5.11106 5.12895
5.14784 5.25084 5.37202 5.49012 5.64062 5.75834 5.87219 6.12744
6.32413 6.38522 6.57733 6.95995 7.09621 7.22954 7.30700 7.52109
7.62951 7.80341 8.09373 8.22630 8.46540 8.65523 8.90875 9.38586
10.86341
Molecular weight = 325.13amu
Principal moments of inertia in cm(-1)
A = 0.021580 B = 0.002744 C = 0.002713
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1297.179569 B =10201.165989 C =10318.570167
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.138 4.138
2 C -0.128 4.128
3 C 0.271 3.729
4 H 0.052 0.948
5 C -0.535 4.535
6 H 0.063 0.937
7 C 0.067 3.933
8 N -0.881 5.881
9 Si 0.901 3.099
10 H -0.272 1.272
11 H -0.283 1.283
12 H -0.282 1.282
13 N -0.693 5.693
14 C 0.523 3.477
15 O -0.535 6.535
16 C -0.115 4.115
17 H 0.123 0.877
18 C -0.143 4.143
19 S 0.107 5.893
20 C 0.211 3.789
21 N -0.335 5.335
22 N -0.034 5.034
23 N -0.090 5.090
24 N -0.338 5.338
25 C 0.058 3.942
26 C -0.155 4.155
27 C -0.164 4.164
28 H 0.024 0.976
29 H 0.050 0.950
30 H 0.038 0.962
31 H 0.032 0.968
32 H 0.101 0.899
33 H 0.265 0.735
34 H 0.392 0.608
35 H 0.070 0.930
36 H 0.081 0.919
37 H 0.078 0.922
38 H 0.158 0.842
39 H 0.114 0.886
40 H 0.118 0.882
41 H 0.120 0.880
42 H 0.106 0.894
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -12.821 11.457 -9.936 19.859
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.196 4.196
2 C -0.167 4.167
3 C 0.170 3.830
4 H 0.070 0.930
5 C -0.574 4.574
6 H 0.081 0.919
7 C -0.136 4.136
8 N -0.519 5.519
9 Si 0.729 3.271
10 H -0.197 1.197
11 H -0.209 1.209
12 H -0.208 1.208
13 N -0.341 5.341
14 C 0.304 3.696
15 O -0.414 6.414
16 C -0.248 4.248
17 H 0.141 0.859
18 C -0.202 4.202
19 S 0.333 5.667
20 C -0.173 4.173
21 N -0.191 5.191
22 N -0.029 5.029
23 N -0.077 5.077
24 N -0.135 5.135
25 C -0.046 4.046
26 C -0.193 4.193
27 C -0.203 4.203
28 H 0.043 0.957
29 H 0.069 0.931
30 H 0.057 0.943
31 H 0.051 0.949
32 H 0.119 0.881
33 H 0.075 0.925
34 H 0.225 0.775
35 H 0.089 0.911
36 H 0.100 0.900
37 H 0.097 0.903
38 H 0.176 0.824
39 H 0.132 0.868
40 H 0.136 0.864
41 H 0.138 0.862
42 H 0.124 0.876
Dipole moment (debyes) X Y Z Total
from point charges -13.551 11.685 -9.440 20.231
hybrid contribution 1.648 -0.250 -0.578 1.765
sum -11.903 11.436 -10.018 19.309
Atomic orbital electron populations
1.21852 0.98297 0.98229 1.01196 1.21949 0.92645 0.99626 1.02504
1.18891 0.94449 0.89266 0.80439 0.93032 1.21245 0.90502 1.39196
1.06435 0.91906 1.24877 0.98690 0.94697 0.95334 1.69898 1.35116
1.37524 1.09319 0.86394 0.84727 0.77833 0.78178 1.19684 1.20856
1.20836 1.46458 1.13651 1.55108 1.18869 1.19290 0.83585 0.79897
0.86785 1.90724 1.51039 1.60006 1.39589 1.23839 1.00785 0.98943
1.01188 0.85924 1.22022 1.02202 0.97649 0.98362 1.86411 1.49955
1.37281 0.93035 1.28223 0.92584 0.92628 1.03869 1.74951 1.25171
1.24261 0.94767 1.77844 1.04930 1.00086 1.20039 1.82398 1.16226
1.20576 0.88508 1.50915 1.29290 1.25365 1.07977 1.22234 0.95710
0.90812 0.95840 1.23410 0.95465 0.98952 1.01471 1.23537 1.01081
0.92357 1.03330 0.95712 0.93097 0.94300 0.94867 0.88133 0.92534
0.77509 0.91062 0.89981 0.90350 0.82427 0.86776 0.86417 0.86229
0.87579
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -2.91 8.51 37.16 0.32 -2.59 16
2 C -0.13 -2.96 5.45 -26.73 -0.15 -3.10 16
3 C 0.27 6.41 2.24 -69.09 -0.15 6.25 16
4 H 0.05 1.42 7.58 -51.93 -0.39 1.02 16
5 C -0.54 -13.50 8.73 -34.44 -0.30 -13.80 16
6 H 0.06 1.53 7.74 -52.49 -0.41 1.12 16
7 C 0.07 1.75 5.29 -17.82 -0.09 1.65 16
8 N -0.88 -23.84 11.29 55.43 0.63 -23.22 16
9 Si 0.90 20.06 29.54 -169.99 -5.02 15.03 16
10 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16
11 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16
12 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16
13 N -0.69 -13.23 5.02 -54.94 -0.28 -13.51 16
14 C 0.52 9.35 5.52 -10.98 -0.06 9.29 16
15 O -0.53 -11.18 13.27 5.56 0.07 -11.10 16
16 C -0.11 -1.60 2.69 -27.88 -0.08 -1.67 16
17 H 0.12 1.58 8.14 -51.92 -0.42 1.16 16
18 C -0.14 -1.81 8.99 37.15 0.33 -1.48 16
19 S 0.11 1.39 20.72 -107.50 -2.23 -0.84 16
20 C 0.21 2.76 7.84 -89.19 -0.70 2.06 16
21 N -0.33 -4.91 9.70 30.50 0.30 -4.61 16
22 N -0.03 -0.51 13.38 60.35 0.81 0.30 16
23 N -0.09 -1.22 13.45 60.35 0.81 -0.41 16
24 N -0.34 -3.97 4.01 -54.81 -0.22 -4.19 16
25 C 0.06 0.46 6.73 -67.93 -0.46 0.00 16
26 C -0.16 -0.88 10.22 -26.73 -0.27 -1.15 16
27 C -0.16 -0.98 10.46 -26.73 -0.28 -1.26 16
28 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16
29 H 0.05 1.14 7.85 -51.93 -0.41 0.73 16
30 H 0.04 0.78 5.64 -51.93 -0.29 0.48 16
31 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16
32 H 0.10 2.59 5.95 -51.93 -0.31 2.28 16
33 H 0.26 6.81 8.31 -40.82 -0.34 6.47 16
34 H 0.39 6.53 8.54 -40.82 -0.35 6.18 16
35 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16
36 H 0.08 1.04 5.91 -51.93 -0.31 0.73 16
37 H 0.08 0.93 8.14 -51.92 -0.42 0.51 16
38 H 0.16 0.98 8.08 -51.93 -0.42 0.56 16
39 H 0.11 0.78 7.91 -51.93 -0.41 0.37 16
40 H 0.12 0.39 8.14 -51.92 -0.42 -0.03 16
41 H 0.12 0.46 8.14 -51.93 -0.42 0.03 16
42 H 0.11 0.76 8.14 -51.93 -0.42 0.33 16
LS Contribution 363.03 15.07 5.47 5.47
Total: -1.00 -30.08 363.03 -7.36 -37.44
By element:
Atomic # 1 Polarization: 11.26 SS G_CDS: -5.81 Total: 5.44 kcal
Atomic # 6 Polarization: -3.92 SS G_CDS: -1.89 Total: -5.81 kcal
Atomic # 7 Polarization: -47.69 SS G_CDS: 2.05 Total: -45.64 kcal
Atomic # 8 Polarization: -11.18 SS G_CDS: 0.07 Total: -11.10 kcal
Atomic # 14 Polarization: 20.06 SS G_CDS: -5.02 Total: 15.03 kcal
Atomic # 16 Polarization: 1.39 SS G_CDS: -2.23 Total: -0.84 kcal
Total LS contribution 5.47 Total: 5.47 kcal
Total: -30.08 -7.36 -37.44 kcal
The number of atoms in the molecule is 42
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000183799852.mol2 42
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 143.178 kcal
(2) G-P(sol) polarization free energy of solvation -30.084 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 113.095 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.360 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.444 kcal
(6) G-S(sol) free energy of system = (1) + (5) 105.735 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.54 seconds