Wall clock time and date at job start Tue Mar 31 2020 14:36:02
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52998 * 1
3 3 C 1.52997 * 109.47182 * 2 1
4 4 H 1.08996 * 109.46979 * 55.00528 * 3 2 1
5 5 C 1.50704 * 109.47087 * 174.99902 * 3 2 1
6 6 H 1.07999 * 119.99674 * 119.99778 * 5 3 2
7 7 C 1.37874 * 120.00069 * 300.00695 * 5 3 2
8 8 N 1.31522 * 120.00191 * 359.97438 * 7 5 3
9 9 Si 1.86800 * 120.00167 * 180.02562 * 7 5 3
10 10 H 1.48503 * 109.46672 * 359.97438 * 9 7 5
11 11 H 1.48495 * 109.47562 * 119.99664 * 9 7 5
12 12 H 1.48504 * 109.46981 * 239.99947 * 9 7 5
13 13 N 1.46493 * 109.47321 * 295.00040 * 3 2 1
14 14 C 1.34779 * 120.00007 * 85.00259 * 13 3 2
15 15 O 1.21276 * 119.99997 * 359.97438 * 14 13 3
16 16 C 1.50706 * 120.00085 * 180.02562 * 14 13 3
17 17 H 1.09000 * 109.46479 * 324.99360 * 16 14 13
18 18 C 1.52992 * 109.47175 * 84.99706 * 16 14 13
19 19 S 1.80995 * 109.46718 * 204.99745 * 16 14 13
20 20 C 1.76208 * 99.99813 * 174.99738 * 19 16 14
21 21 N 1.31539 * 126.45045 * 0.02562 * 20 19 16
22 22 N 1.28419 * 110.50245 * 179.97438 * 21 20 19
23 23 N 1.28908 * 110.33719 * 359.97438 * 22 21 20
24 24 N 1.35390 * 126.45269 * 179.97438 * 20 19 16
25 25 C 1.46502 * 127.38979 * 359.96669 * 24 20 19
26 26 C 1.52995 * 117.50116 * 188.63602 * 25 24 20
27 27 C 1.52997 * 117.49916 * 120.01115 * 25 24 20
28 28 H 1.09005 * 109.47176 * 179.97438 * 1 2 3
29 29 H 1.08998 * 109.46998 * 299.99486 * 1 2 3
30 30 H 1.09002 * 109.47219 * 59.99527 * 1 2 3
31 31 H 1.09007 * 109.46835 * 239.99894 * 2 1 3
32 32 H 1.09002 * 109.47219 * 120.00472 * 2 1 3
33 33 H 0.97000 * 120.00070 * 180.02562 * 8 7 5
34 34 H 0.97001 * 120.00224 * 264.99592 * 13 3 2
35 35 H 1.09004 * 109.47502 * 59.99671 * 18 16 14
36 36 H 1.08998 * 109.47349 * 180.02562 * 18 16 14
37 37 H 1.09007 * 109.47333 * 299.99998 * 18 16 14
38 38 H 1.08996 * 115.54783 * 334.35057 * 25 24 20
39 39 H 1.08995 * 117.50143 * 0.02562 * 26 25 24
40 40 H 1.09008 * 117.49535 * 145.02086 * 26 25 24
41 41 H 1.08994 * 117.50319 * 214.97753 * 27 25 24
42 42 H 1.09001 * 117.50158 * 359.97438 * 27 25 24
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4425 0.0000
4 1 1.6054 1.9814 0.8418
5 6 3.5419 1.4442 0.1239
6 1 4.1472 1.8888 -0.6523
7 6 4.1433 0.8782 1.2279
8 7 3.4062 0.3372 2.1733
9 14 6.0049 0.8810 1.3818
10 1 6.5987 1.5462 0.1942
11 1 6.3990 1.6164 2.6102
12 1 6.4970 -0.5177 1.4628
13 7 1.6525 2.0975 -1.2517
14 6 0.4352 2.6645 -1.3668
15 8 -0.3395 2.6320 -0.4343
16 6 0.0363 3.3378 -2.6548
17 1 0.9081 3.8184 -3.0986
18 6 -0.5200 2.2938 -3.6250
19 16 -1.2324 4.5835 -2.3164
20 6 -1.3961 5.2968 -3.9193
21 7 -0.7332 4.9489 -5.0009
22 7 -1.0935 5.6699 -6.0006
23 7 -1.9967 6.5161 -5.6403
24 7 -2.2284 6.3055 -4.2698
25 6 -3.1700 7.0226 -3.4064
26 6 -4.1483 7.9889 -4.0772
27 6 -2.9790 8.5329 -3.2538
28 1 -0.3634 -1.0277 -0.0005
29 1 -0.3633 0.5137 0.8900
30 1 -0.3634 0.5139 -0.8899
31 1 1.8933 -0.5139 -0.8900
32 1 1.8933 -0.5139 0.8899
33 1 3.8292 -0.0607 2.9502
34 1 2.2720 2.1232 -1.9977
35 1 -1.3918 1.8132 -3.1811
36 1 -0.8081 2.7807 -4.5567
37 1 0.2441 1.5436 -3.8288
38 1 -3.5248 6.4698 -2.5366
39 1 -4.0917 8.0909 -5.1609
40 1 -5.1472 8.0719 -3.6487
41 1 -3.2087 8.9738 -2.2839
42 1 -2.1525 8.9930 -3.7955
RHF calculation, no. of doubly occupied orbitals= 58
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000183799852.mol2 42
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 14:36:02
Heat of formation + Delta-G solvation = 87.031509 kcal
Electronic energy + Delta-G solvation = -25104.594383 eV
Core-core repulsion = 21442.041808 eV
Total energy + Delta-G solvation = -3662.552575 eV
No. of doubly occupied orbitals = 58
Molecular weight
(most abundant/longest-lived isotopes) = 325.131 amu
Computer time = 0.61 seconds
Orbital eigenvalues (eV)
-44.04639 -40.89051 -38.72405 -37.02791 -34.83855 -34.24631 -34.10418 -33.20799
-32.40199 -28.93177 -26.53329 -25.93234 -24.78409 -24.57594 -23.48683 -22.79077
-22.04880 -21.17359 -19.73594 -18.68099 -18.10664 -17.81705 -17.65697 -17.12794
-16.57956 -16.29066 -16.10053 -15.74426 -14.98330 -14.70071 -14.63210 -14.58352
-14.34220 -13.78169 -13.55492 -13.37159 -13.34925 -13.20263 -13.11196 -13.01346
-12.86596 -12.69411 -12.59456 -12.27281 -12.14389 -12.05073 -12.02589 -11.70662
-11.60376 -11.55057 -11.03244 -10.98772 -10.79293 -10.51839 -9.70113 -9.14954
-8.15418 -6.31768 -0.50058 -0.33101 0.54662 0.90562 0.96639 1.44686
1.47312 1.57738 1.68150 2.30375 2.48530 2.51614 3.05337 3.14756
3.42182 3.62829 3.68542 3.73210 3.73925 3.99007 4.04469 4.20232
4.46178 4.53700 4.60945 4.62895 4.64204 4.72275 4.79113 4.89204
5.05907 5.08340 5.11453 5.14175 5.29914 5.45720 5.54230 5.61385
5.80544 5.89972 6.18417 6.75282 6.84650 7.18483 7.30526 7.45945
8.89824
Molecular weight = 325.13amu
Principal moments of inertia in cm(-1)
A = 0.021580 B = 0.002744 C = 0.002713
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1297.179569 B =10201.165989 C =10318.570167
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.125 4.125
2 C -0.122 4.122
3 C 0.280 3.720
4 H 0.006 0.994
5 C -0.546 4.546
6 H 0.071 0.929
7 C 0.019 3.981
8 N -0.913 5.913
9 Si 0.965 3.035
10 H -0.262 1.262
11 H -0.285 1.285
12 H -0.280 1.280
13 N -0.692 5.692
14 C 0.526 3.474
15 O -0.566 6.566
16 C -0.110 4.110
17 H 0.136 0.864
18 C -0.137 4.137
19 S 0.123 5.877
20 C 0.204 3.796
21 N -0.348 5.348
22 N -0.057 5.057
23 N -0.095 5.095
24 N -0.326 5.326
25 C 0.024 3.976
26 C -0.140 4.140
27 C -0.154 4.154
28 H 0.044 0.956
29 H 0.028 0.972
30 H 0.047 0.953
31 H 0.041 0.959
32 H 0.071 0.929
33 H 0.265 0.735
34 H 0.406 0.594
35 H 0.069 0.931
36 H 0.084 0.916
37 H 0.087 0.913
38 H 0.175 0.825
39 H 0.101 0.899
40 H 0.147 0.853
41 H 0.146 0.854
42 H 0.092 0.908
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -13.234 12.363 -10.848 21.110
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.183 4.183
2 C -0.161 4.161
3 C 0.177 3.823
4 H 0.024 0.976
5 C -0.585 4.585
6 H 0.089 0.911
7 C -0.182 4.182
8 N -0.551 5.551
9 Si 0.791 3.209
10 H -0.186 1.186
11 H -0.211 1.211
12 H -0.206 1.206
13 N -0.341 5.341
14 C 0.309 3.691
15 O -0.446 6.446
16 C -0.243 4.243
17 H 0.154 0.846
18 C -0.196 4.196
19 S 0.348 5.652
20 C -0.180 4.180
21 N -0.205 5.205
22 N -0.052 5.052
23 N -0.082 5.082
24 N -0.124 5.124
25 C -0.078 4.078
26 C -0.178 4.178
27 C -0.193 4.193
28 H 0.063 0.937
29 H 0.047 0.953
30 H 0.066 0.934
31 H 0.060 0.940
32 H 0.090 0.910
33 H 0.074 0.926
34 H 0.241 0.759
35 H 0.088 0.912
36 H 0.103 0.897
37 H 0.106 0.894
38 H 0.192 0.808
39 H 0.120 0.880
40 H 0.165 0.835
41 H 0.164 0.836
42 H 0.110 0.890
Dipole moment (debyes) X Y Z Total
from point charges -13.974 12.617 -10.389 21.503
hybrid contribution 1.671 -0.432 -0.266 1.746
sum -12.303 12.185 -10.655 20.332
Atomic orbital electron populations
1.21699 0.96760 0.99282 1.00511 1.21795 0.93934 0.98974 1.01415
1.18444 0.93625 0.89300 0.80939 0.97602 1.21593 0.91465 1.38799
1.06618 0.91068 1.25687 1.02898 0.94466 0.95134 1.70039 1.36828
1.38385 1.09842 0.85396 0.79644 0.77746 0.78148 1.18608 1.21100
1.20615 1.46188 1.14680 1.55288 1.17926 1.19775 0.82565 0.79064
0.87683 1.90716 1.51799 1.60932 1.41178 1.23690 1.02067 0.99628
0.98875 0.84592 1.21991 1.02340 0.97399 0.97855 1.86377 1.49363
1.36776 0.92640 1.28151 0.93024 0.93256 1.03558 1.74860 1.25811
1.24734 0.95113 1.77828 1.05906 1.00881 1.20635 1.82320 1.15946
1.20357 0.89550 1.51174 1.28914 1.24719 1.07574 1.22852 0.96578
0.91899 0.96517 1.23532 0.96607 0.96783 1.00885 1.23640 1.00707
0.90378 1.04530 0.93719 0.95289 0.93373 0.93975 0.91024 0.92613
0.75891 0.91241 0.89699 0.89397 0.80774 0.88011 0.83468 0.83610
0.88952
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.13 -5.24 8.51 71.98 0.61 -4.63 16
2 C -0.12 -5.67 5.45 30.59 0.17 -5.51 16
3 C 0.28 13.43 2.24 44.25 0.10 13.53 16
4 H 0.01 0.35 7.58 -2.39 -0.02 0.33 16
5 C -0.55 -27.58 8.73 25.60 0.22 -27.35 16
6 H 0.07 3.39 7.74 -2.91 -0.02 3.37 16
7 C 0.02 0.96 5.29 84.65 0.45 1.41 16
8 N -0.91 -50.39 11.29 21.45 0.24 -50.15 16
9 Si 0.97 40.99 29.54 68.60 2.03 43.02 16
10 H -0.26 -10.60 7.11 99.48 0.71 -9.89 16
11 H -0.28 -12.13 7.11 99.48 0.71 -11.42 16
12 H -0.28 -11.74 7.11 99.48 0.71 -11.03 16
13 N -0.69 -26.10 5.02 -446.11 -2.24 -28.34 16
14 C 0.53 18.47 5.52 87.66 0.48 18.96 16
15 O -0.57 -23.69 13.27 -3.02 -0.04 -23.73 16
16 C -0.11 -2.92 2.69 29.85 0.08 -2.84 16
17 H 0.14 3.28 8.14 -2.40 -0.02 3.26 16
18 C -0.14 -3.24 8.99 71.98 0.65 -2.59 16
19 S 0.12 3.02 20.72 -56.49 -1.17 1.84 16
20 C 0.20 5.10 7.84 179.85 1.41 6.51 16
21 N -0.35 -9.87 9.70 -57.41 -0.56 -10.43 16
22 N -0.06 -1.70 13.38 37.02 0.50 -1.20 16
23 N -0.09 -2.49 13.45 37.02 0.50 -2.00 16
24 N -0.33 -7.25 4.01 -327.31 -1.31 -8.56 16
25 C 0.02 0.33 6.73 44.99 0.30 0.63 16
26 C -0.14 -1.25 10.22 30.59 0.31 -0.93 16
27 C -0.15 -1.47 10.46 30.59 0.32 -1.15 16
28 H 0.04 1.65 8.14 -2.38 -0.02 1.64 16
29 H 0.03 1.31 7.85 -2.39 -0.02 1.29 16
30 H 0.05 1.90 5.64 -2.39 -0.01 1.88 16
31 H 0.04 1.84 8.14 -2.38 -0.02 1.82 16
32 H 0.07 3.78 5.95 -2.39 -0.01 3.76 16
33 H 0.26 13.88 8.31 -92.71 -0.77 13.11 16
34 H 0.41 13.02 8.54 -92.71 -0.79 12.23 16
35 H 0.07 1.67 8.14 -2.38 -0.02 1.65 16
36 H 0.08 2.02 5.91 -2.39 -0.01 2.00 16
37 H 0.09 1.91 8.14 -2.38 -0.02 1.89 16
38 H 0.18 1.75 8.08 -2.39 -0.02 1.73 16
39 H 0.10 1.22 7.91 -2.39 -0.02 1.20 16
40 H 0.15 0.45 8.14 -2.38 -0.02 0.43 16
41 H 0.15 0.63 8.14 -2.39 -0.02 0.61 16
42 H 0.09 1.18 8.14 -2.39 -0.02 1.16 16
Total: -1.00 -65.82 363.03 3.31 -62.51
By element:
Atomic # 1 Polarization: 20.74 SS G_CDS: 0.26 Total: 21.01 kcal
Atomic # 6 Polarization: -9.07 SS G_CDS: 5.11 Total: -3.96 kcal
Atomic # 7 Polarization: -97.80 SS G_CDS: -2.88 Total: -100.68 kcal
Atomic # 8 Polarization: -23.69 SS G_CDS: -0.04 Total: -23.73 kcal
Atomic # 14 Polarization: 40.99 SS G_CDS: 2.03 Total: 43.02 kcal
Atomic # 16 Polarization: 3.02 SS G_CDS: -1.17 Total: 1.84 kcal
Total: -65.82 3.31 -62.51 kcal
The number of atoms in the molecule is 42
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000183799852.mol2 42
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 149.538 kcal
(2) G-P(sol) polarization free energy of solvation -65.817 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.721 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.311 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.507 kcal
(6) G-S(sol) free energy of system = (1) + (5) 87.032 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.62 seconds