Wall clock time and date at job start Tue Mar 31 2020 13:56:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86797 * 120.00325 * 2 1 4 4 H 1.48502 * 109.47216 * 270.00432 * 3 2 1 5 5 H 1.48506 * 109.46787 * 29.99905 * 3 2 1 6 6 H 1.48493 * 109.47497 * 150.00127 * 3 2 1 7 7 C 1.38815 * 119.99757 * 180.02562 * 2 1 3 8 8 H 1.07991 * 120.00085 * 359.97438 * 7 2 1 9 9 N 1.36939 * 119.99662 * 180.26958 * 7 2 1 10 10 C 1.46499 * 119.99969 * 186.50152 * 9 7 2 11 11 H 1.08992 * 109.47429 * 174.37186 * 10 9 7 12 12 C 1.53002 * 109.46964 * 294.37392 * 10 9 7 13 13 N 1.46498 * 109.47275 * 294.99627 * 12 10 9 14 14 C 1.36034 * 126.34949 * 264.69425 * 13 12 10 15 15 N 1.30115 * 110.09955 * 179.87543 * 14 13 12 16 16 C 1.35786 * 109.63956 * 0.38773 * 15 14 13 17 17 C 1.39743 * 133.59482 * 179.75142 * 16 15 14 18 18 C 1.36599 * 119.88384 * 180.02562 * 17 16 15 19 19 C 1.38782 * 120.66898 * 359.95249 * 18 17 16 20 20 C 1.37851 * 120.45260 * 0.02562 * 19 18 17 21 21 C 1.38057 * 126.34700 * 85.00136 * 13 12 10 22 22 C 1.50701 * 109.46851 * 54.36848 * 10 9 7 23 23 C 1.38245 * 119.97358 * 213.23428 * 22 10 9 24 24 C 1.38198 * 120.02319 * 179.76854 * 23 22 10 25 25 C 1.38458 * 119.97597 * 0.51606 * 24 23 22 26 26 F 1.35097 * 120.02628 * 179.76926 * 25 24 23 27 27 C 1.38462 * 119.94540 * 359.74197 * 25 24 23 28 28 C 1.38199 * 119.97632 * 0.02562 * 27 25 24 29 29 H 0.97003 * 119.99864 * 359.97438 * 1 2 3 30 30 H 0.96998 * 119.99692 * 6.50560 * 9 7 2 31 31 H 1.08997 * 109.47755 * 55.00084 * 12 10 9 32 32 H 1.09003 * 109.47180 * 175.00170 * 12 10 9 33 33 H 1.08000 * 124.95311 * 359.97438 * 14 13 12 34 34 H 1.07998 * 120.05747 * 0.02562 * 17 16 15 35 35 H 1.08000 * 119.66687 * 179.97438 * 18 17 16 36 36 H 1.07996 * 119.77050 * 180.02562 * 19 18 17 37 37 H 1.07991 * 120.15731 * 179.97438 * 20 19 18 38 38 H 1.07998 * 119.98680 * 0.03258 * 23 22 10 39 39 H 1.07997 * 120.01265 * 180.26122 * 24 23 22 40 40 H 1.08000 * 120.00721 * 179.97438 * 27 25 24 41 41 H 1.07994 * 119.98292 * 180.02562 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4477 2.6526 0.7001 6 1 3.5478 1.4401 0.7000 7 6 2.0102 -1.2022 -0.0005 8 1 1.4702 -2.1374 -0.0005 9 7 3.3796 -1.2022 0.0050 10 6 4.1127 -2.4623 -0.1392 11 1 5.1803 -2.2553 -0.2121 12 6 3.8471 -3.3491 1.0791 13 7 4.4019 -2.7129 2.2764 14 6 5.6233 -2.9536 2.8250 15 7 5.7930 -2.2129 3.8811 16 6 4.6875 -1.4519 4.0873 17 6 4.3354 -0.5056 5.0535 18 6 3.1164 0.1078 4.9929 19 6 2.2197 -0.1978 3.9787 20 6 2.5458 -1.1276 3.0146 21 6 3.7798 -1.7622 3.0607 22 6 3.6521 -3.1715 -1.3866 23 6 3.6174 -4.5530 -1.4228 24 6 3.1906 -5.2043 -2.5645 25 6 2.8078 -4.4729 -3.6760 26 9 2.3949 -5.1086 -4.7943 27 6 2.8480 -3.0893 -3.6404 28 6 3.2706 -2.4401 -2.4959 29 1 -0.4850 0.8401 0.0004 30 1 3.8641 -0.3678 0.1045 31 1 2.7727 -3.4832 1.2037 32 1 4.3198 -4.3202 0.9316 33 1 6.3473 -3.6560 2.4391 34 1 5.0259 -0.2598 5.8466 35 1 2.8478 0.8382 5.7417 36 1 1.2600 0.2962 3.9445 37 1 1.8443 -1.3621 2.2277 38 1 3.9199 -5.1234 -0.5571 39 1 3.1596 -6.2835 -2.5912 40 1 2.5500 -2.5178 -4.5069 41 1 3.3016 -1.3609 -2.4678 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000185088238.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:56:46 Heat of formation + Delta-G solvation = 79.992233 kcal Electronic energy + Delta-G solvation = -27438.857610 eV Core-core repulsion = 23620.635876 eV Total energy + Delta-G solvation = -3818.221734 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.129 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -48.65249 -41.64608 -39.15599 -36.81117 -35.93285 -33.26787 -32.06018 -30.95848 -30.04377 -29.64137 -28.76498 -27.20435 -24.68352 -22.75490 -22.63348 -22.51252 -21.50744 -20.46763 -19.55955 -18.25772 -17.49964 -16.69147 -16.57532 -15.85009 -15.50900 -15.34786 -15.30016 -14.99354 -14.69646 -14.28771 -13.96069 -13.49784 -13.35307 -13.23792 -13.14259 -12.97458 -12.78848 -12.29861 -12.07481 -11.93058 -11.56288 -11.41585 -11.27492 -11.01052 -10.94458 -10.74416 -10.61825 -10.26555 -9.90690 -9.79961 -9.50399 -9.13028 -8.77126 -8.22455 -7.89247 -7.65727 -7.34810 -6.00900 -3.39792 1.43445 1.54673 1.57329 2.09607 3.09852 3.23732 3.29907 3.30816 3.35595 3.90427 4.39435 4.46364 4.51401 4.67042 4.76228 4.95036 5.01317 5.12138 5.18386 5.22302 5.36299 5.50363 5.56937 5.59569 5.61028 5.70204 5.82010 5.95967 6.01031 6.11123 6.22258 6.25109 6.30820 6.36742 6.40311 6.63317 6.75853 6.92799 7.04477 7.16313 7.21183 7.24188 7.49616 7.63613 7.72498 8.16001 8.31134 8.92724 9.65509 9.83453 11.14756 Molecular weight = 325.13amu Principal moments of inertia in cm(-1) A = 0.012736 B = 0.005096 C = 0.003951 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2197.968032 B = 5493.419598 C = 7085.779728 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C 0.027 3.973 3 Si 0.871 3.129 4 H -0.285 1.285 5 H -0.289 1.289 6 H -0.274 1.274 7 C -0.253 4.253 8 H 0.092 0.908 9 N -0.737 5.737 10 C 0.204 3.796 11 H 0.076 0.924 12 C 0.094 3.906 13 N -0.472 5.472 14 C 0.240 3.760 15 N -0.508 5.508 16 C 0.031 3.969 17 C -0.089 4.089 18 C -0.129 4.129 19 C -0.123 4.123 20 C -0.075 4.075 21 C 0.068 3.932 22 C -0.084 4.084 23 C -0.101 4.101 24 C -0.161 4.161 25 C 0.084 3.916 26 F -0.149 7.149 27 C -0.157 4.157 28 C -0.038 4.038 29 H 0.263 0.737 30 H 0.368 0.632 31 H 0.097 0.903 32 H 0.085 0.915 33 H 0.204 0.796 34 H 0.116 0.884 35 H 0.117 0.883 36 H 0.122 0.878 37 H 0.162 0.838 38 H 0.127 0.873 39 H 0.127 0.873 40 H 0.128 0.872 41 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.126 -7.027 0.337 10.748 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.172 4.172 3 Si 0.701 3.299 4 H -0.211 1.211 5 H -0.215 1.215 6 H -0.200 1.200 7 C -0.382 4.382 8 H 0.110 0.890 9 N -0.378 5.378 10 C 0.092 3.908 11 H 0.094 0.906 12 C -0.031 4.031 13 N -0.160 5.160 14 C -0.045 4.045 15 N -0.228 5.228 16 C -0.087 4.087 17 C -0.109 4.109 18 C -0.149 4.149 19 C -0.144 4.144 20 C -0.095 4.095 21 C -0.041 4.041 22 C -0.087 4.087 23 C -0.120 4.120 24 C -0.180 4.180 25 C 0.065 3.935 26 F -0.128 7.128 27 C -0.176 4.176 28 C -0.056 4.056 29 H 0.073 0.927 30 H 0.201 0.799 31 H 0.116 0.884 32 H 0.103 0.897 33 H 0.220 0.780 34 H 0.134 0.866 35 H 0.135 0.865 36 H 0.140 0.860 37 H 0.179 0.821 38 H 0.145 0.855 39 H 0.145 0.855 40 H 0.146 0.854 41 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 8.487 -7.111 0.683 11.094 hybrid contribution -0.334 1.104 -0.859 1.439 sum 8.153 -6.007 -0.176 10.129 Atomic orbital electron populations 1.69687 1.05075 1.26241 1.55174 1.24604 0.94967 0.96852 1.00733 0.86759 0.79801 0.85513 0.77792 1.21146 1.21483 1.20025 1.18768 0.80084 0.94484 1.44854 0.89023 1.42791 1.04385 1.02681 1.87961 1.19360 0.95379 0.87200 0.88879 0.90635 1.22611 1.01257 0.95269 0.83974 1.45247 1.14475 1.33409 1.22907 1.25109 0.87153 1.00127 0.92127 1.70358 1.25066 1.10375 1.17002 1.19037 0.91484 1.00527 0.97659 1.19767 0.96793 0.96416 0.97890 1.20579 0.94093 1.00820 0.99421 1.20915 0.99833 0.98747 0.94858 1.20954 0.94675 0.94804 0.99024 1.18832 0.96578 0.95168 0.93510 1.20463 0.99094 0.92858 0.96306 1.20907 0.99825 0.94024 0.97228 1.20944 1.03894 1.00026 0.93123 1.17718 1.01578 0.90852 0.83340 1.91449 1.88300 1.82446 1.50627 1.21155 1.03757 0.92297 1.00405 1.20888 0.93364 1.01098 0.90282 0.92693 0.79878 0.88431 0.89651 0.77957 0.86574 0.86453 0.85981 0.82119 0.85532 0.85547 0.85399 0.84358 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -25.23 13.97 55.49 0.78 -24.45 16 2 C 0.03 0.67 5.26 -17.43 -0.09 0.58 16 3 Si 0.87 20.11 27.81 -169.99 -4.73 15.38 16 4 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 5 H -0.29 -6.96 7.11 56.52 0.40 -6.55 16 6 H -0.27 -6.21 6.43 56.52 0.36 -5.85 16 7 C -0.25 -5.69 5.56 -15.06 -0.08 -5.78 16 8 H 0.09 2.30 7.51 -52.49 -0.39 1.90 16 9 N -0.74 -14.06 3.44 -54.55 -0.19 -14.24 16 10 C 0.20 3.08 3.34 -69.08 -0.23 2.85 16 11 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 12 C 0.09 1.30 4.98 -4.04 -0.02 1.28 16 13 N -0.47 -7.43 2.77 -115.79 -0.32 -7.75 16 14 C 0.24 3.47 12.49 -89.78 -1.12 2.34 16 15 N -0.51 -8.92 11.27 -12.05 -0.14 -9.06 16 16 C 0.03 0.58 7.23 -84.70 -0.61 -0.03 16 17 C -0.09 -1.52 10.05 -39.61 -0.40 -1.92 16 18 C -0.13 -2.11 9.96 -39.97 -0.40 -2.51 16 19 C -0.12 -2.25 10.03 -39.52 -0.40 -2.65 16 20 C -0.07 -1.48 9.24 -39.50 -0.37 -1.84 16 21 C 0.07 1.28 6.44 -83.99 -0.54 0.74 16 22 C -0.08 -1.25 5.00 -104.62 -0.52 -1.78 16 23 C -0.10 -1.29 9.13 -39.59 -0.36 -1.65 16 24 C -0.16 -2.12 10.03 -39.51 -0.40 -2.52 16 25 C 0.08 1.25 7.30 -39.42 -0.29 0.97 16 26 F -0.15 -2.25 17.27 2.25 0.04 -2.22 16 27 C -0.16 -2.41 10.03 -39.51 -0.40 -2.81 16 28 C -0.04 -0.62 8.62 -39.59 -0.34 -0.96 16 29 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 30 H 0.37 7.48 5.87 -40.82 -0.24 7.24 16 31 H 0.10 1.58 7.32 -51.93 -0.38 1.20 16 32 H 0.09 0.87 6.22 -51.93 -0.32 0.54 16 33 H 0.20 1.92 8.06 -52.49 -0.42 1.49 16 34 H 0.12 1.74 8.06 -52.49 -0.42 1.32 16 35 H 0.12 1.56 8.06 -52.49 -0.42 1.14 16 36 H 0.12 2.12 8.06 -52.49 -0.42 1.70 16 37 H 0.16 3.54 5.13 -52.49 -0.27 3.27 16 38 H 0.13 1.25 5.96 -52.49 -0.31 0.94 16 39 H 0.13 1.38 8.06 -52.49 -0.42 0.95 16 40 H 0.13 1.80 8.06 -52.49 -0.42 1.37 16 41 H 0.14 2.43 7.40 -52.49 -0.39 2.04 16 LS Contribution 342.07 15.07 5.15 5.15 Total: -1.00 -28.62 342.07 -10.41 -39.02 By element: Atomic # 1 Polarization: 18.28 SS G_CDS: -4.44 Total: 13.84 kcal Atomic # 6 Polarization: -9.12 SS G_CDS: -6.56 Total: -15.68 kcal Atomic # 7 Polarization: -55.64 SS G_CDS: 0.13 Total: -55.51 kcal Atomic # 9 Polarization: -2.25 SS G_CDS: 0.04 Total: -2.22 kcal Atomic # 14 Polarization: 20.11 SS G_CDS: -4.73 Total: 15.38 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -28.62 -10.41 -39.02 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000185088238.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.016 kcal (2) G-P(sol) polarization free energy of solvation -28.617 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 90.400 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.408 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.024 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.992 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds