Wall clock time and date at job start Tue Mar 31 2020 13:56:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86797 * 120.00325 * 2 1 4 4 H 1.48502 * 109.47216 * 270.00432 * 3 2 1 5 5 H 1.48506 * 109.46787 * 29.99905 * 3 2 1 6 6 H 1.48493 * 109.47497 * 150.00127 * 3 2 1 7 7 C 1.38815 * 119.99757 * 180.02562 * 2 1 3 8 8 H 1.07991 * 120.00085 * 359.97438 * 7 2 1 9 9 N 1.36939 * 119.99662 * 180.26958 * 7 2 1 10 10 C 1.46499 * 119.99969 * 186.50152 * 9 7 2 11 11 H 1.08992 * 109.47429 * 174.37186 * 10 9 7 12 12 C 1.53002 * 109.46964 * 294.37392 * 10 9 7 13 13 N 1.46498 * 109.47275 * 294.99627 * 12 10 9 14 14 C 1.36034 * 126.34949 * 264.69425 * 13 12 10 15 15 N 1.30115 * 110.09955 * 179.87543 * 14 13 12 16 16 C 1.35786 * 109.63956 * 0.38773 * 15 14 13 17 17 C 1.39743 * 133.59482 * 179.75142 * 16 15 14 18 18 C 1.36599 * 119.88384 * 180.02562 * 17 16 15 19 19 C 1.38782 * 120.66898 * 359.95249 * 18 17 16 20 20 C 1.37851 * 120.45260 * 0.02562 * 19 18 17 21 21 C 1.38057 * 126.34700 * 85.00136 * 13 12 10 22 22 C 1.50701 * 109.46851 * 54.36848 * 10 9 7 23 23 C 1.38245 * 119.97358 * 213.23428 * 22 10 9 24 24 C 1.38198 * 120.02319 * 179.76854 * 23 22 10 25 25 C 1.38458 * 119.97597 * 0.51606 * 24 23 22 26 26 F 1.35097 * 120.02628 * 179.76926 * 25 24 23 27 27 C 1.38462 * 119.94540 * 359.74197 * 25 24 23 28 28 C 1.38199 * 119.97632 * 0.02562 * 27 25 24 29 29 H 0.97003 * 119.99864 * 359.97438 * 1 2 3 30 30 H 0.96998 * 119.99692 * 6.50560 * 9 7 2 31 31 H 1.08997 * 109.47755 * 55.00084 * 12 10 9 32 32 H 1.09003 * 109.47180 * 175.00170 * 12 10 9 33 33 H 1.08000 * 124.95311 * 359.97438 * 14 13 12 34 34 H 1.07998 * 120.05747 * 0.02562 * 17 16 15 35 35 H 1.08000 * 119.66687 * 179.97438 * 18 17 16 36 36 H 1.07996 * 119.77050 * 180.02562 * 19 18 17 37 37 H 1.07991 * 120.15731 * 179.97438 * 20 19 18 38 38 H 1.07998 * 119.98680 * 0.03258 * 23 22 10 39 39 H 1.07997 * 120.01265 * 180.26122 * 24 23 22 40 40 H 1.08000 * 120.00721 * 179.97438 * 27 25 24 41 41 H 1.07994 * 119.98292 * 180.02562 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4477 2.6526 0.7001 6 1 3.5478 1.4401 0.7000 7 6 2.0102 -1.2022 -0.0005 8 1 1.4702 -2.1374 -0.0005 9 7 3.3796 -1.2022 0.0050 10 6 4.1127 -2.4623 -0.1392 11 1 5.1803 -2.2553 -0.2121 12 6 3.8471 -3.3491 1.0791 13 7 4.4019 -2.7129 2.2764 14 6 5.6233 -2.9536 2.8250 15 7 5.7930 -2.2129 3.8811 16 6 4.6875 -1.4519 4.0873 17 6 4.3354 -0.5056 5.0535 18 6 3.1164 0.1078 4.9929 19 6 2.2197 -0.1978 3.9787 20 6 2.5458 -1.1276 3.0146 21 6 3.7798 -1.7622 3.0607 22 6 3.6521 -3.1715 -1.3866 23 6 3.6174 -4.5530 -1.4228 24 6 3.1906 -5.2043 -2.5645 25 6 2.8078 -4.4729 -3.6760 26 9 2.3949 -5.1086 -4.7943 27 6 2.8480 -3.0893 -3.6404 28 6 3.2706 -2.4401 -2.4959 29 1 -0.4850 0.8401 0.0004 30 1 3.8641 -0.3678 0.1045 31 1 2.7727 -3.4832 1.2037 32 1 4.3198 -4.3202 0.9316 33 1 6.3473 -3.6560 2.4391 34 1 5.0259 -0.2598 5.8466 35 1 2.8478 0.8382 5.7417 36 1 1.2600 0.2962 3.9445 37 1 1.8443 -1.3621 2.2277 38 1 3.9199 -5.1234 -0.5571 39 1 3.1596 -6.2835 -2.5912 40 1 2.5500 -2.5178 -4.5069 41 1 3.3016 -1.3609 -2.4678 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000185088238.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:56:45 Heat of formation + Delta-G solvation = 66.459519 kcal Electronic energy + Delta-G solvation = -27439.444433 eV Core-core repulsion = 23620.635876 eV Total energy + Delta-G solvation = -3818.808556 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.129 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -49.81737 -42.90795 -40.34798 -38.11348 -37.32254 -34.77544 -33.59004 -32.20647 -31.46990 -30.94080 -30.06861 -28.48189 -26.21181 -24.04559 -23.96664 -23.70990 -22.82729 -21.74511 -20.86190 -19.99884 -18.65452 -17.97917 -17.83860 -17.07290 -16.80013 -16.54878 -16.52629 -16.45435 -16.24766 -15.70626 -15.20993 -14.84382 -14.78065 -14.60897 -14.36551 -14.31662 -14.10890 -13.58000 -13.53746 -13.13980 -13.03296 -12.90449 -12.71145 -12.45875 -12.34685 -12.19718 -11.93099 -11.78827 -11.69784 -11.26244 -10.98595 -10.66600 -9.90493 -9.54821 -9.32078 -9.09966 -8.76004 -7.96509 -5.28227 0.21516 0.29373 0.44703 0.74690 1.34726 1.40198 1.43437 1.89789 2.06459 2.49263 2.74515 3.09468 3.36381 3.38632 3.50552 3.52388 3.79748 3.93691 4.00735 4.03422 4.10467 4.26023 4.30728 4.38237 4.40091 4.53471 4.66307 4.68155 4.74568 4.86429 4.93196 5.03875 5.12024 5.15563 5.28241 5.43674 5.45258 5.70426 5.71523 5.76761 5.82693 5.89008 6.07228 6.12506 6.24935 6.47207 7.06033 7.10972 7.85373 8.01967 9.23581 Molecular weight = 325.13amu Principal moments of inertia in cm(-1) A = 0.012736 B = 0.005096 C = 0.003951 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2197.968032 B = 5493.419598 C = 7085.779728 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.969 5.969 2 C -0.029 4.029 3 Si 0.919 3.081 4 H -0.290 1.290 5 H -0.307 1.307 6 H -0.266 1.266 7 C -0.189 4.189 8 H 0.067 0.933 9 N -0.742 5.742 10 C 0.202 3.798 11 H 0.099 0.901 12 C 0.099 3.901 13 N -0.475 5.475 14 C 0.263 3.737 15 N -0.536 5.536 16 C 0.014 3.986 17 C -0.095 4.095 18 C -0.125 4.125 19 C -0.138 4.138 20 C -0.094 4.094 21 C 0.049 3.951 22 C -0.092 4.092 23 C -0.089 4.089 24 C -0.153 4.153 25 C 0.071 3.929 26 F -0.153 7.153 27 C -0.170 4.170 28 C -0.061 4.061 29 H 0.253 0.747 30 H 0.363 0.637 31 H 0.072 0.928 32 H 0.140 0.860 33 H 0.259 0.741 34 H 0.137 0.863 35 H 0.148 0.852 36 H 0.119 0.881 37 H 0.130 0.870 38 H 0.167 0.833 39 H 0.157 0.843 40 H 0.129 0.871 41 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.141 -9.531 1.076 14.701 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.619 5.619 2 C -0.222 4.222 3 Si 0.750 3.250 4 H -0.217 1.217 5 H -0.234 1.234 6 H -0.192 1.192 7 C -0.319 4.319 8 H 0.085 0.915 9 N -0.382 5.382 10 C 0.092 3.908 11 H 0.117 0.883 12 C -0.024 4.024 13 N -0.163 5.163 14 C -0.022 4.022 15 N -0.257 5.257 16 C -0.104 4.104 17 C -0.115 4.115 18 C -0.145 4.145 19 C -0.158 4.158 20 C -0.114 4.114 21 C -0.061 4.061 22 C -0.095 4.095 23 C -0.107 4.107 24 C -0.172 4.172 25 C 0.052 3.948 26 F -0.132 7.132 27 C -0.189 4.189 28 C -0.080 4.080 29 H 0.062 0.938 30 H 0.195 0.805 31 H 0.090 0.910 32 H 0.157 0.843 33 H 0.274 0.726 34 H 0.155 0.845 35 H 0.166 0.834 36 H 0.137 0.863 37 H 0.148 0.852 38 H 0.184 0.816 39 H 0.175 0.825 40 H 0.147 0.853 41 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 11.564 -9.650 1.414 15.128 hybrid contribution -1.159 1.701 -1.103 2.335 sum 10.406 -7.949 0.311 13.098 Atomic orbital electron populations 1.69804 1.06541 1.25871 1.59705 1.24969 0.95171 0.98961 1.03134 0.85978 0.78845 0.83059 0.77087 1.21660 1.23433 1.19187 1.18497 0.81463 0.92644 1.39334 0.91516 1.42814 1.03090 1.04408 1.87897 1.19648 0.96062 0.85594 0.89502 0.88326 1.22644 1.00450 0.96973 0.82349 1.45398 1.14867 1.32929 1.23087 1.26189 0.86736 0.98918 0.90369 1.70388 1.24902 1.11565 1.18827 1.19408 0.91967 1.01054 0.97948 1.20115 0.97250 0.95969 0.98155 1.20832 0.93418 1.01002 0.99214 1.21063 1.00405 0.98793 0.95522 1.20695 0.95065 0.96488 0.99174 1.18884 0.96301 0.96227 0.94645 1.20437 0.99593 0.94037 0.95402 1.21244 0.98215 0.92966 0.98267 1.21321 1.02117 1.01554 0.92170 1.17928 1.02142 0.90749 0.84023 1.91441 1.88414 1.82346 1.50954 1.21218 1.04144 0.93072 1.00421 1.20795 0.95326 1.00270 0.91598 0.93751 0.80461 0.90991 0.84266 0.72558 0.84537 0.83381 0.86263 0.85231 0.81578 0.82525 0.85284 0.86624 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -56.31 13.97 21.65 0.30 -56.00 16 2 C -0.03 -1.53 5.26 84.86 0.45 -1.08 16 3 Si 0.92 43.26 27.81 68.60 1.91 45.17 16 4 H -0.29 -13.63 7.11 99.48 0.71 -12.93 16 5 H -0.31 -15.24 7.11 99.48 0.71 -14.53 16 6 H -0.27 -11.94 6.43 99.48 0.64 -11.31 16 7 C -0.19 -8.71 5.56 84.03 0.47 -8.25 16 8 H 0.07 3.45 7.51 -2.92 -0.02 3.43 16 9 N -0.74 -27.93 3.44 -326.51 -1.12 -29.05 16 10 C 0.20 5.55 3.34 44.25 0.15 5.70 16 11 H 0.10 2.33 8.14 -2.39 -0.02 2.31 16 12 C 0.10 2.40 4.98 86.38 0.43 2.83 16 13 N -0.47 -13.42 2.77 -520.26 -1.44 -14.86 16 14 C 0.26 6.35 12.49 180.06 2.25 8.60 16 15 N -0.54 -17.12 11.27 -192.03 -2.17 -19.29 16 16 C 0.01 0.50 7.23 39.45 0.29 0.78 16 17 C -0.10 -3.10 10.05 22.25 0.22 -2.88 16 18 C -0.12 -3.94 9.96 22.02 0.22 -3.73 16 19 C -0.14 -5.11 10.03 22.31 0.22 -4.89 16 20 C -0.09 -3.78 9.24 22.32 0.21 -3.57 16 21 C 0.05 1.77 6.44 38.86 0.25 2.02 16 22 C -0.09 -2.52 5.00 -19.86 -0.10 -2.62 16 23 C -0.09 -1.88 9.13 22.26 0.20 -1.68 16 24 C -0.15 -3.46 10.03 22.31 0.22 -3.23 16 25 C 0.07 1.98 7.30 22.38 0.16 2.15 16 26 F -0.15 -4.39 17.27 44.97 0.78 -3.61 16 27 C -0.17 -5.18 10.03 22.31 0.22 -4.95 16 28 C -0.06 -1.97 8.62 22.26 0.19 -1.78 16 29 H 0.25 14.53 8.31 -92.71 -0.77 13.76 16 30 H 0.36 14.55 5.87 -92.71 -0.54 14.01 16 31 H 0.07 2.19 7.32 -2.39 -0.02 2.17 16 32 H 0.14 1.88 6.22 -2.39 -0.01 1.87 16 33 H 0.26 3.00 8.06 -2.91 -0.02 2.98 16 34 H 0.14 3.78 8.06 -2.91 -0.02 3.75 16 35 H 0.15 3.65 8.06 -2.91 -0.02 3.63 16 36 H 0.12 4.34 8.06 -2.91 -0.02 4.32 16 37 H 0.13 5.97 5.13 -2.92 -0.01 5.96 16 38 H 0.17 2.15 5.96 -2.91 -0.02 2.14 16 39 H 0.16 2.62 8.06 -2.91 -0.02 2.59 16 40 H 0.13 3.73 8.06 -2.91 -0.02 3.71 16 41 H 0.12 4.19 7.40 -2.91 -0.02 4.16 16 Total: -1.00 -66.98 342.07 4.78 -62.19 By element: Atomic # 1 Polarization: 31.55 SS G_CDS: 0.47 Total: 32.02 kcal Atomic # 6 Polarization: -22.62 SS G_CDS: 6.06 Total: -16.57 kcal Atomic # 7 Polarization: -114.77 SS G_CDS: -4.43 Total: -119.20 kcal Atomic # 9 Polarization: -4.39 SS G_CDS: 0.78 Total: -3.61 kcal Atomic # 14 Polarization: 43.26 SS G_CDS: 1.91 Total: 45.17 kcal Total: -66.98 4.78 -62.19 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000185088238.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.654 kcal (2) G-P(sol) polarization free energy of solvation -66.977 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.677 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.782 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.195 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.460 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds