Wall clock time and date at job start Tue Mar 31 2020 13:48:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42901 * 113.99664 * 2 1 4 4 C 1.53001 * 109.46865 * 180.02562 * 3 2 1 5 5 N 1.46503 * 109.47042 * 65.00229 * 4 3 2 6 6 C 1.37097 * 119.99773 * 264.46868 * 5 4 3 7 7 H 1.08001 * 119.99221 * 138.27377 * 6 5 4 8 8 C 1.38941 * 120.00196 * 318.27286 * 6 5 4 9 9 N 1.31412 * 120.00262 * 341.88838 * 8 6 5 10 10 Si 1.86804 * 119.99799 * 161.88339 * 8 6 5 11 11 H 1.48503 * 109.47202 * 0.02562 * 10 8 6 12 12 H 1.48498 * 109.47083 * 120.00464 * 10 8 6 13 13 H 1.48501 * 109.47373 * 240.00319 * 10 8 6 14 14 C 1.34772 * 119.99616 * 84.46978 * 5 4 3 15 15 O 1.21294 * 120.00613 * 0.02562 * 14 5 4 16 16 C 1.50705 * 119.99795 * 179.97438 * 14 5 4 17 17 H 1.09004 * 115.56261 * 325.68912 * 16 14 5 18 18 C 1.53002 * 117.49763 * 111.37832 * 16 14 5 19 19 C 1.53001 * 117.50174 * 180.02562 * 16 14 5 20 20 H 1.08997 * 117.52473 * 145.02686 * 19 16 14 21 21 C 1.50704 * 117.49465 * 359.97438 * 19 16 14 22 22 C 1.38234 * 119.98660 * 299.98660 * 21 19 16 23 23 C 1.38193 * 120.04797 * 180.26028 * 22 21 19 24 24 C 1.38502 * 120.02166 * 359.48725 * 23 22 21 25 25 F 1.35105 * 120.00937 * 180.28097 * 24 23 22 26 26 C 1.38388 * 119.97724 * 0.48804 * 24 23 22 27 27 C 1.38443 * 119.94948 * 359.77356 * 26 24 23 28 28 F 1.35102 * 120.01245 * 180.02562 * 27 26 24 29 29 H 1.09001 * 109.47601 * 59.99414 * 1 2 3 30 30 H 1.09001 * 109.46855 * 179.97438 * 1 2 3 31 31 H 1.09006 * 109.47112 * 299.99658 * 1 2 3 32 32 H 1.09004 * 109.46969 * 60.00607 * 3 2 1 33 33 H 1.08997 * 109.47488 * 300.00432 * 3 2 1 34 34 H 1.08997 * 109.47200 * 304.99997 * 4 3 2 35 35 H 1.09002 * 109.46819 * 185.00118 * 4 3 2 36 36 H 0.96999 * 119.99821 * 179.97438 * 9 8 6 37 37 H 1.09004 * 117.49719 * 0.02562 * 18 16 14 38 38 H 1.08998 * 117.51585 * 214.97338 * 18 16 14 39 39 H 1.07993 * 119.97801 * 359.97438 * 22 21 19 40 40 H 1.07991 * 119.98516 * 179.72569 * 23 22 21 41 41 H 1.08005 * 120.03034 * 179.74289 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 7 3.9756 0.5645 -1.2528 6 6 4.2061 -0.7859 -1.3049 7 1 3.8777 -1.3571 -2.1606 8 6 4.8621 -1.4197 -0.2568 9 7 5.5679 -0.7149 0.5987 10 14 4.7407 -3.2738 -0.0638 11 1 3.8931 -3.8300 -1.1489 12 1 6.0986 -3.8696 -0.1422 13 1 4.1342 -3.5957 1.2529 14 6 4.1540 1.3216 -2.3534 15 8 3.9506 2.5165 -2.3072 16 6 4.6074 0.6838 -3.6413 17 1 5.2943 -0.1558 -3.5341 18 6 3.6047 0.6331 -4.7959 19 6 4.7923 1.5967 -4.8551 20 1 5.6002 1.3579 -5.5467 21 6 4.5064 3.0649 -4.6713 22 6 3.2462 3.4802 -4.2838 23 6 2.9812 4.8266 -4.1202 24 6 3.9812 5.7607 -4.3339 25 9 3.7234 7.0765 -4.1683 26 6 5.2434 5.3460 -4.7214 27 6 5.5062 3.9973 -4.8903 28 9 6.7381 3.5910 -5.2681 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8901 32 1 1.6886 1.8464 0.8901 33 1 1.6885 1.8465 -0.8899 34 1 3.8514 0.5683 0.8409 35 1 3.9784 2.1766 0.0889 36 1 6.0256 -1.1573 1.3306 37 1 2.6172 1.0615 -4.6240 38 1 3.6317 -0.2395 -5.4484 39 1 2.4669 2.7523 -4.1134 40 1 1.9951 5.1502 -3.8217 41 1 6.0227 6.0740 -4.8924 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000457180444.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:48:52 Heat of formation + Delta-G solvation = -101.373306 kcal Electronic energy + Delta-G solvation = -28484.514762 eV Core-core repulsion = 24195.366452 eV Total energy + Delta-G solvation = -4289.148310 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.128 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -48.70850 -48.60999 -39.74311 -38.15181 -37.08206 -35.75910 -34.53461 -31.63759 -30.47154 -29.96779 -29.17592 -25.93058 -24.88078 -23.91968 -23.56026 -22.51053 -21.36234 -20.33316 -18.98100 -18.05276 -17.12745 -16.77778 -16.26380 -15.68476 -15.50094 -15.45176 -15.44440 -14.98164 -14.91972 -14.63339 -14.40504 -14.16858 -14.08400 -13.92093 -13.48120 -13.14246 -12.74620 -12.34210 -12.10195 -11.97159 -11.73228 -11.50292 -11.23009 -11.19093 -11.09690 -11.05599 -10.92400 -10.68834 -10.35152 -10.22488 -10.05572 -9.90603 -9.22809 -9.03269 -8.77711 -8.35518 -7.70024 -7.48080 -6.36604 -4.07039 1.35057 1.48714 3.12524 3.25050 3.28499 3.46018 3.89659 4.12009 4.22492 4.42711 4.44005 4.61802 4.82024 4.92340 4.97295 5.03996 5.17374 5.41955 5.45627 5.51747 5.58382 5.61293 5.67034 5.91083 5.93420 5.98835 6.03725 6.13698 6.19105 6.25909 6.28806 6.34670 6.36875 6.45502 6.59306 6.69298 6.78422 7.17216 7.19401 7.46260 7.77750 7.98203 8.36224 9.09611 9.48115 9.90375 10.67264 Molecular weight = 325.13amu Principal moments of inertia in cm(-1) A = 0.014264 B = 0.004420 C = 0.003838 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1962.493645 B = 6333.045816 C = 7293.046793 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.365 6.365 3 C 0.053 3.947 4 C 0.121 3.879 5 N -0.420 5.420 6 C -0.323 4.323 7 H 0.087 0.913 8 C 0.049 3.951 9 N -0.863 5.863 10 Si 0.915 3.085 11 H -0.268 1.268 12 H -0.284 1.284 13 H -0.280 1.280 14 C 0.492 3.508 15 O -0.595 6.595 16 C -0.131 4.131 17 H 0.129 0.871 18 C -0.153 4.153 19 C -0.107 4.107 20 H 0.116 0.884 21 C -0.066 4.066 22 C 0.016 3.984 23 C -0.173 4.173 24 C 0.117 3.883 25 F -0.143 7.143 26 C -0.205 4.205 27 C 0.127 3.873 28 F -0.137 7.137 29 H 0.031 0.969 30 H 0.077 0.923 31 H 0.030 0.970 32 H 0.038 0.962 33 H 0.041 0.959 34 H 0.105 0.895 35 H 0.070 0.930 36 H 0.268 0.732 37 H 0.096 0.904 38 H 0.101 0.899 39 H 0.132 0.868 40 H 0.131 0.869 41 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.720 4.379 -7.531 10.422 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.283 6.283 3 C -0.025 4.025 4 C -0.003 4.003 5 N -0.135 5.135 6 C -0.451 4.451 7 H 0.104 0.896 8 C -0.157 4.157 9 N -0.500 5.500 10 Si 0.742 3.258 11 H -0.192 1.192 12 H -0.210 1.210 13 H -0.206 1.206 14 C 0.282 3.718 15 O -0.482 6.482 16 C -0.152 4.152 17 H 0.147 0.853 18 C -0.190 4.190 19 C -0.126 4.126 20 H 0.134 0.866 21 C -0.067 4.067 22 C -0.002 4.002 23 C -0.192 4.192 24 C 0.098 3.902 25 F -0.122 7.122 26 C -0.225 4.225 27 C 0.108 3.892 28 F -0.116 7.116 29 H 0.050 0.950 30 H 0.096 0.904 31 H 0.048 0.952 32 H 0.056 0.944 33 H 0.059 0.941 34 H 0.123 0.877 35 H 0.088 0.912 36 H 0.078 0.922 37 H 0.114 0.886 38 H 0.120 0.880 39 H 0.149 0.851 40 H 0.149 0.851 41 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -5.548 4.766 -7.278 10.318 hybrid contribution 0.027 -0.662 0.488 0.823 sum -5.521 4.104 -6.790 9.666 Atomic orbital electron populations 1.22644 0.83388 1.01756 0.98824 1.88136 1.17394 1.27768 1.95041 1.23035 0.96526 0.84269 0.98646 1.21351 0.89045 0.98947 0.90908 1.43241 1.55702 1.07338 1.07262 1.19297 1.36508 0.82110 1.07203 0.89562 1.25368 0.93705 0.99845 0.96795 1.69937 1.27524 1.36653 1.15844 0.86077 0.77801 0.83271 0.78683 1.19186 1.21020 1.20579 1.19523 0.80871 0.85827 0.85620 1.90537 1.57838 1.14823 1.85001 1.22201 1.03151 1.01100 0.88717 0.85334 1.23010 0.94350 1.00703 1.00964 1.20917 1.01465 0.88175 1.02052 0.86627 1.18925 0.93143 0.93335 1.01291 1.20416 0.95583 0.94178 0.90007 1.20929 0.99290 0.92899 1.06083 1.17182 0.93738 0.77551 1.01732 1.91466 1.94625 1.32767 1.93303 1.20693 0.97409 0.95218 1.09202 1.16942 0.80041 0.91554 1.00706 1.91464 1.40225 1.91127 1.88762 0.95023 0.90404 0.95159 0.94356 0.94050 0.87669 0.91159 0.92159 0.88607 0.88027 0.85050 0.85100 0.84453 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.47 11.01 101.05 1.11 1.58 16 2 O -0.37 -7.41 10.44 -35.23 -0.37 -7.78 16 3 C 0.05 1.05 6.24 37.16 0.23 1.28 16 4 C 0.12 2.78 5.27 -4.04 -0.02 2.76 16 5 N -0.42 -9.99 2.45 -114.81 -0.28 -10.28 16 6 C -0.32 -7.91 7.97 -14.94 -0.12 -8.03 16 7 H 0.09 2.06 7.48 -52.49 -0.39 1.67 16 8 C 0.05 1.21 4.95 -17.47 -0.09 1.13 16 9 N -0.86 -22.59 11.66 55.50 0.65 -21.94 16 10 Si 0.91 19.55 29.59 -169.99 -5.03 14.52 16 11 H -0.27 -5.59 7.11 56.52 0.40 -5.19 16 12 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 13 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 14 C 0.49 11.03 7.24 -10.99 -0.08 10.95 16 15 O -0.59 -13.66 11.38 5.55 0.06 -13.59 16 16 C -0.13 -2.48 5.07 -91.77 -0.47 -2.94 16 17 H 0.13 2.49 7.50 -51.93 -0.39 2.10 16 18 C -0.15 -2.29 9.58 -26.70 -0.26 -2.55 16 19 C -0.11 -1.76 5.80 -91.74 -0.53 -2.29 16 20 H 0.12 1.71 7.87 -51.93 -0.41 1.30 16 21 C -0.07 -1.13 4.37 -104.54 -0.46 -1.59 16 22 C 0.02 0.27 6.17 -39.60 -0.24 0.03 16 23 C -0.17 -2.68 10.03 -39.50 -0.40 -3.08 16 24 C 0.12 1.85 7.30 -39.43 -0.29 1.56 16 25 F -0.14 -2.19 17.27 2.25 0.04 -2.15 16 26 C -0.21 -3.24 10.01 -39.45 -0.39 -3.63 16 27 C 0.13 2.16 7.24 -39.43 -0.29 1.88 16 28 F -0.14 -2.33 16.61 2.25 0.04 -2.29 16 29 H 0.03 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.08 1.05 8.14 -51.93 -0.42 0.62 16 31 H 0.03 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 34 H 0.11 2.63 5.81 -51.93 -0.30 2.33 16 35 H 0.07 1.64 7.59 -51.93 -0.39 1.25 16 36 H 0.27 6.66 8.31 -40.82 -0.34 6.32 16 37 H 0.10 1.41 6.17 -51.93 -0.32 1.09 16 38 H 0.10 1.28 8.14 -51.93 -0.42 0.85 16 39 H 0.13 2.10 5.78 -52.49 -0.30 1.79 16 40 H 0.13 1.75 8.06 -52.49 -0.42 1.33 16 41 H 0.14 1.87 8.06 -52.48 -0.42 1.45 16 LS Contribution 350.43 15.07 5.28 5.28 Total: -1.00 -28.02 350.43 -6.92 -34.94 By element: Atomic # 1 Polarization: 11.26 SS G_CDS: -5.03 Total: 6.23 kcal Atomic # 6 Polarization: -0.67 SS G_CDS: -2.28 Total: -2.95 kcal Atomic # 7 Polarization: -32.59 SS G_CDS: 0.37 Total: -32.22 kcal Atomic # 8 Polarization: -21.06 SS G_CDS: -0.30 Total: -21.37 kcal Atomic # 9 Polarization: -4.51 SS G_CDS: 0.08 Total: -4.44 kcal Atomic # 14 Polarization: 19.55 SS G_CDS: -5.03 Total: 14.52 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -28.02 -6.92 -34.94 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457180444.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.429 kcal (2) G-P(sol) polarization free energy of solvation -28.024 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.453 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.920 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.944 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.373 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds