Wall clock time and date at job start Tue Mar 31 2020 13:48:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42901 * 113.99664 * 2 1 4 4 C 1.53001 * 109.46865 * 180.02562 * 3 2 1 5 5 N 1.46503 * 109.47042 * 65.00229 * 4 3 2 6 6 C 1.37097 * 119.99773 * 264.46868 * 5 4 3 7 7 H 1.08001 * 119.99221 * 138.27377 * 6 5 4 8 8 C 1.38941 * 120.00196 * 318.27286 * 6 5 4 9 9 N 1.31412 * 120.00262 * 341.88838 * 8 6 5 10 10 Si 1.86804 * 119.99799 * 161.88339 * 8 6 5 11 11 H 1.48503 * 109.47202 * 0.02562 * 10 8 6 12 12 H 1.48498 * 109.47083 * 120.00464 * 10 8 6 13 13 H 1.48501 * 109.47373 * 240.00319 * 10 8 6 14 14 C 1.34772 * 119.99616 * 84.46978 * 5 4 3 15 15 O 1.21294 * 120.00613 * 0.02562 * 14 5 4 16 16 C 1.50705 * 119.99795 * 179.97438 * 14 5 4 17 17 H 1.09004 * 115.56261 * 325.68912 * 16 14 5 18 18 C 1.53002 * 117.49763 * 111.37832 * 16 14 5 19 19 C 1.53001 * 117.50174 * 180.02562 * 16 14 5 20 20 H 1.08997 * 117.52473 * 145.02686 * 19 16 14 21 21 C 1.50704 * 117.49465 * 359.97438 * 19 16 14 22 22 C 1.38234 * 119.98660 * 299.98660 * 21 19 16 23 23 C 1.38193 * 120.04797 * 180.26028 * 22 21 19 24 24 C 1.38502 * 120.02166 * 359.48725 * 23 22 21 25 25 F 1.35105 * 120.00937 * 180.28097 * 24 23 22 26 26 C 1.38388 * 119.97724 * 0.48804 * 24 23 22 27 27 C 1.38443 * 119.94948 * 359.77356 * 26 24 23 28 28 F 1.35102 * 120.01245 * 180.02562 * 27 26 24 29 29 H 1.09001 * 109.47601 * 59.99414 * 1 2 3 30 30 H 1.09001 * 109.46855 * 179.97438 * 1 2 3 31 31 H 1.09006 * 109.47112 * 299.99658 * 1 2 3 32 32 H 1.09004 * 109.46969 * 60.00607 * 3 2 1 33 33 H 1.08997 * 109.47488 * 300.00432 * 3 2 1 34 34 H 1.08997 * 109.47200 * 304.99997 * 4 3 2 35 35 H 1.09002 * 109.46819 * 185.00118 * 4 3 2 36 36 H 0.96999 * 119.99821 * 179.97438 * 9 8 6 37 37 H 1.09004 * 117.49719 * 0.02562 * 18 16 14 38 38 H 1.08998 * 117.51585 * 214.97338 * 18 16 14 39 39 H 1.07993 * 119.97801 * 359.97438 * 22 21 19 40 40 H 1.07991 * 119.98516 * 179.72569 * 23 22 21 41 41 H 1.08005 * 120.03034 * 179.74289 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 7 3.9756 0.5645 -1.2528 6 6 4.2061 -0.7859 -1.3049 7 1 3.8777 -1.3571 -2.1606 8 6 4.8621 -1.4197 -0.2568 9 7 5.5679 -0.7149 0.5987 10 14 4.7407 -3.2738 -0.0638 11 1 3.8931 -3.8300 -1.1489 12 1 6.0986 -3.8696 -0.1422 13 1 4.1342 -3.5957 1.2529 14 6 4.1540 1.3216 -2.3534 15 8 3.9506 2.5165 -2.3072 16 6 4.6074 0.6838 -3.6413 17 1 5.2943 -0.1558 -3.5341 18 6 3.6047 0.6331 -4.7959 19 6 4.7923 1.5967 -4.8551 20 1 5.6002 1.3579 -5.5467 21 6 4.5064 3.0649 -4.6713 22 6 3.2462 3.4802 -4.2838 23 6 2.9812 4.8266 -4.1202 24 6 3.9812 5.7607 -4.3339 25 9 3.7234 7.0765 -4.1683 26 6 5.2434 5.3460 -4.7214 27 6 5.5062 3.9973 -4.8903 28 9 6.7381 3.5910 -5.2681 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8901 32 1 1.6886 1.8464 0.8901 33 1 1.6885 1.8465 -0.8899 34 1 3.8514 0.5683 0.8409 35 1 3.9784 2.1766 0.0889 36 1 6.0256 -1.1573 1.3306 37 1 2.6172 1.0615 -4.6240 38 1 3.6317 -0.2395 -5.4484 39 1 2.4669 2.7523 -4.1134 40 1 1.9951 5.1502 -3.8217 41 1 6.0227 6.0740 -4.8924 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000457180444.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:48:52 Heat of formation + Delta-G solvation = -115.060944 kcal Electronic energy + Delta-G solvation = -28485.108302 eV Core-core repulsion = 24195.366452 eV Total energy + Delta-G solvation = -4289.741850 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.128 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -49.94137 -49.91538 -41.22891 -39.62856 -38.53110 -37.19755 -36.27192 -33.47590 -31.74441 -31.34396 -30.69083 -27.27173 -26.67594 -25.32630 -24.93149 -23.79154 -22.90882 -21.65774 -20.71954 -19.36485 -18.58785 -18.26603 -17.77608 -17.10380 -17.04267 -16.86137 -16.71840 -16.46934 -16.24767 -16.11896 -15.94068 -15.60937 -15.44163 -15.31746 -14.89954 -14.70477 -14.21961 -13.71208 -13.57834 -13.30629 -13.26412 -12.98181 -12.86881 -12.82729 -12.51426 -12.45056 -12.33078 -12.18050 -12.01246 -11.76784 -11.47759 -11.27427 -10.94985 -10.52183 -10.35863 -9.69466 -9.31149 -9.09702 -8.22265 -5.97146 0.07082 0.22520 1.43547 1.51063 1.61832 1.93504 2.36959 2.52075 2.89088 2.97106 3.03758 3.10304 3.28060 3.55434 3.63294 3.72635 3.99469 4.03125 4.11230 4.20538 4.28491 4.32991 4.43501 4.55986 4.57557 4.65693 4.67693 4.80190 4.85922 4.89775 4.93939 4.97253 5.01000 5.11925 5.17661 5.24764 5.35969 5.49881 5.57218 5.92179 6.12815 6.43877 6.49649 7.23791 7.70857 8.11532 8.82118 Molecular weight = 325.13amu Principal moments of inertia in cm(-1) A = 0.014264 B = 0.004420 C = 0.003838 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1962.493645 B = 6333.045816 C = 7293.046793 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.397 6.397 3 C 0.067 3.933 4 C 0.122 3.878 5 N -0.437 5.437 6 C -0.323 4.323 7 H 0.091 0.909 8 C 0.005 3.995 9 N -0.901 5.901 10 Si 0.975 3.025 11 H -0.256 1.256 12 H -0.284 1.284 13 H -0.285 1.285 14 C 0.487 3.513 15 O -0.605 6.605 16 C -0.162 4.162 17 H 0.119 0.881 18 C -0.122 4.122 19 C -0.101 4.101 20 H 0.131 0.869 21 C -0.081 4.081 22 C 0.008 3.992 23 C -0.172 4.172 24 C 0.112 3.888 25 F -0.140 7.140 26 C -0.206 4.206 27 C 0.111 3.889 28 F -0.140 7.140 29 H 0.042 0.958 30 H 0.093 0.907 31 H 0.048 0.952 32 H 0.060 0.940 33 H 0.039 0.961 34 H 0.080 0.920 35 H 0.054 0.946 36 H 0.267 0.733 37 H 0.100 0.900 38 H 0.133 0.867 39 H 0.135 0.865 40 H 0.152 0.848 41 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.149 4.010 -8.793 12.021 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.317 6.317 3 C -0.011 4.011 4 C -0.002 4.002 5 N -0.154 5.154 6 C -0.451 4.451 7 H 0.108 0.892 8 C -0.197 4.197 9 N -0.539 5.539 10 Si 0.800 3.200 11 H -0.180 1.180 12 H -0.210 1.210 13 H -0.211 1.211 14 C 0.277 3.723 15 O -0.493 6.493 16 C -0.183 4.183 17 H 0.137 0.863 18 C -0.159 4.159 19 C -0.120 4.120 20 H 0.149 0.851 21 C -0.082 4.082 22 C -0.010 4.010 23 C -0.191 4.191 24 C 0.092 3.908 25 F -0.118 7.118 26 C -0.225 4.225 27 C 0.091 3.909 28 F -0.119 7.119 29 H 0.061 0.939 30 H 0.111 0.889 31 H 0.067 0.933 32 H 0.078 0.922 33 H 0.058 0.942 34 H 0.099 0.901 35 H 0.072 0.928 36 H 0.076 0.924 37 H 0.119 0.881 38 H 0.151 0.849 39 H 0.153 0.847 40 H 0.170 0.830 41 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -6.993 4.405 -8.564 11.901 hybrid contribution 0.435 -0.422 0.846 1.041 sum -6.558 3.983 -7.718 10.883 Atomic orbital electron populations 1.22881 0.80628 1.03308 1.00255 1.88067 1.20442 1.27827 1.95313 1.22786 0.94234 0.84563 0.99506 1.21215 0.91453 0.97312 0.90217 1.43434 1.56722 1.07445 1.07775 1.19485 1.35800 0.82598 1.07248 0.89170 1.26094 0.93477 1.03487 0.96640 1.70045 1.29015 1.38150 1.16696 0.85155 0.77677 0.78771 0.78414 1.17988 1.20984 1.21142 1.20103 0.79957 0.85870 0.86353 1.90520 1.58034 1.15250 1.85514 1.22080 1.05744 1.02133 0.88359 0.86282 1.23170 0.93668 1.01030 0.98038 1.21024 1.02784 0.87840 1.00328 0.85138 1.19140 0.93558 0.93836 1.01659 1.20517 0.95532 0.94709 0.90262 1.21195 1.00236 0.92579 1.05044 1.17273 0.93893 0.77786 1.01820 1.91474 1.94597 1.32495 1.93275 1.20914 0.98013 0.95225 1.08359 1.17132 0.80057 0.92171 1.01521 1.91450 1.40362 1.91209 1.88885 0.93904 0.88877 0.93314 0.92180 0.94246 0.90139 0.92774 0.92373 0.88133 0.84860 0.84708 0.83043 0.82631 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.71 11.01 113.37 1.25 1.96 16 2 O -0.40 -15.74 10.44 -148.98 -1.56 -17.30 16 3 C 0.07 2.61 6.24 71.98 0.45 3.06 16 4 C 0.12 5.74 5.27 86.38 0.45 6.19 16 5 N -0.44 -21.08 2.45 -635.54 -1.56 -22.64 16 6 C -0.32 -15.91 7.97 84.04 0.67 -15.24 16 7 H 0.09 4.26 7.48 -2.91 -0.02 4.24 16 8 C 0.01 0.26 4.95 84.92 0.42 0.68 16 9 N -0.90 -48.47 11.66 21.66 0.25 -48.21 16 10 Si 0.97 40.19 29.59 68.60 2.03 42.22 16 11 H -0.26 -9.97 7.11 99.48 0.71 -9.27 16 12 H -0.28 -11.57 7.11 99.48 0.71 -10.86 16 13 H -0.29 -11.90 7.11 99.48 0.71 -11.20 16 14 C 0.49 21.87 7.24 87.66 0.63 22.50 16 15 O -0.61 -27.82 11.38 -3.07 -0.03 -27.85 16 16 C -0.16 -6.02 5.07 -11.54 -0.06 -6.08 16 17 H 0.12 4.61 7.50 -2.39 -0.02 4.59 16 18 C -0.12 -3.36 9.58 30.61 0.29 -3.07 16 19 C -0.10 -3.16 5.80 -11.52 -0.07 -3.23 16 20 H 0.13 3.63 7.87 -2.39 -0.02 3.61 16 21 C -0.08 -2.68 4.37 -19.81 -0.09 -2.77 16 22 C 0.01 0.25 6.17 22.26 0.14 0.39 16 23 C -0.17 -5.05 10.03 22.32 0.22 -4.83 16 24 C 0.11 3.36 7.30 22.37 0.16 3.52 16 25 F -0.14 -4.04 17.27 44.97 0.78 -3.27 16 26 C -0.21 -6.22 10.01 22.35 0.22 -6.00 16 27 C 0.11 3.66 7.24 22.37 0.16 3.82 16 28 F -0.14 -4.66 16.61 44.97 0.75 -3.91 16 29 H 0.04 1.09 8.14 -2.39 -0.02 1.07 16 30 H 0.09 2.28 8.14 -2.39 -0.02 2.26 16 31 H 0.05 1.17 8.14 -2.38 -0.02 1.15 16 32 H 0.06 2.04 8.14 -2.38 -0.02 2.02 16 33 H 0.04 1.53 8.14 -2.39 -0.02 1.52 16 34 H 0.08 4.18 5.81 -2.39 -0.01 4.16 16 35 H 0.05 2.63 7.59 -2.39 -0.02 2.61 16 36 H 0.27 13.67 8.31 -92.71 -0.77 12.90 16 37 H 0.10 2.70 6.17 -2.38 -0.01 2.69 16 38 H 0.13 2.84 8.14 -2.39 -0.02 2.83 16 39 H 0.14 4.10 5.78 -2.91 -0.02 4.08 16 40 H 0.15 3.72 8.06 -2.92 -0.02 3.70 16 41 H 0.16 4.00 8.06 -2.91 -0.02 3.97 16 Total: -1.00 -60.59 350.43 6.59 -54.00 By element: Atomic # 1 Polarization: 25.00 SS G_CDS: 1.07 Total: 26.06 kcal Atomic # 6 Polarization: -3.97 SS G_CDS: 4.87 Total: 0.90 kcal Atomic # 7 Polarization: -69.54 SS G_CDS: -1.31 Total: -70.85 kcal Atomic # 8 Polarization: -43.56 SS G_CDS: -1.59 Total: -45.15 kcal Atomic # 9 Polarization: -8.70 SS G_CDS: 1.52 Total: -7.18 kcal Atomic # 14 Polarization: 40.19 SS G_CDS: 2.03 Total: 42.22 kcal Total: -60.59 6.59 -54.00 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457180444.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.063 kcal (2) G-P(sol) polarization free energy of solvation -60.587 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.650 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.589 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.998 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.061 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds