Wall clock time and date at job start Tue Mar 31 2020 13:48:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.42903 * 113.99719 * 2 1 4 4 C 1.53003 * 109.46777 * 179.97438 * 3 2 1 5 5 N 1.46503 * 109.46771 * 65.00216 * 4 3 2 6 6 C 1.37098 * 119.99971 * 269.99398 * 5 4 3 7 7 H 1.07996 * 120.00208 * 139.47107 * 6 5 4 8 8 C 1.38949 * 120.00378 * 319.47930 * 6 5 4 9 9 N 1.31410 * 120.00548 * 159.04520 * 8 6 5 10 10 Si 1.86807 * 119.99656 * 339.04422 * 8 6 5 11 11 H 1.48503 * 109.46994 * 96.14372 * 10 8 6 12 12 H 1.48500 * 109.47248 * 216.14691 * 10 8 6 13 13 H 1.48499 * 109.46987 * 336.14715 * 10 8 6 14 14 C 1.34776 * 120.00182 * 89.99809 * 5 4 3 15 15 O 1.21293 * 119.99751 * 4.85929 * 14 5 4 16 16 C 1.50699 * 119.99825 * 184.85392 * 14 5 4 17 17 H 1.08997 * 115.55553 * 11.19626 * 16 14 5 18 18 C 1.53005 * 117.51954 * 225.49032 * 16 14 5 19 19 C 1.53003 * 60.00096 * 252.52306 * 18 16 14 20 20 H 1.09004 * 117.51752 * 107.47980 * 19 18 16 21 21 C 1.50700 * 117.49833 * 252.51012 * 19 18 16 22 22 C 1.38255 * 119.99750 * 13.74656 * 21 19 18 23 23 C 1.38213 * 120.06692 * 180.25736 * 22 21 19 24 24 C 1.38258 * 120.07168 * 359.49194 * 23 22 21 25 25 C 1.38372 * 119.99877 * 0.25395 * 24 23 22 26 26 F 1.35100 * 120.03577 * 180.02562 * 25 24 23 27 27 C 1.38372 * 119.99858 * 193.49767 * 21 19 18 28 28 F 1.35097 * 120.03669 * 359.97286 * 27 21 19 29 29 H 1.08995 * 109.46870 * 300.00059 * 1 2 3 30 30 H 1.08995 * 109.46991 * 60.00208 * 1 2 3 31 31 H 1.09001 * 109.46937 * 180.02562 * 1 2 3 32 32 H 1.08999 * 109.47400 * 60.00073 * 3 2 1 33 33 H 1.08997 * 109.47172 * 299.99977 * 3 2 1 34 34 H 1.08994 * 109.47556 * 305.00276 * 4 3 2 35 35 H 1.08994 * 109.47102 * 184.99721 * 4 3 2 36 36 H 0.97000 * 120.00151 * 179.97438 * 9 8 6 37 37 H 1.08997 * 117.49957 * 145.02891 * 18 16 14 38 38 H 1.09004 * 117.49288 * 0.02562 * 18 16 14 39 39 H 1.08001 * 119.96835 * 0.02562 * 22 21 19 40 40 H 1.08001 * 119.97016 * 179.77190 * 23 22 21 41 41 H 1.07999 * 120.00617 * 180.23613 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1847 0.0006 5 7 3.9766 0.5640 -1.2509 6 6 4.0980 -0.7990 -1.3346 7 1 3.7787 -1.3158 -2.2276 8 6 4.6316 -1.5157 -0.2705 9 7 4.3843 -2.8011 -0.1541 10 14 5.7006 -0.6520 0.9947 11 1 4.8701 -0.2660 2.1637 12 1 6.7825 -1.5680 1.4369 13 1 6.2990 0.5649 0.3892 14 6 4.2633 1.3330 -2.3201 15 8 4.2414 2.5416 -2.2211 16 6 4.6110 0.6910 -3.6384 17 1 4.4265 -0.3814 -3.7023 18 6 5.8162 1.2470 -4.3994 19 6 4.3988 1.5210 -4.9061 20 1 4.0077 2.5314 -4.7865 21 6 3.9508 0.7934 -6.1474 22 6 4.6814 -0.2807 -6.6206 23 6 4.2747 -0.9458 -7.7620 24 6 3.1307 -0.5450 -8.4268 25 6 2.3944 0.5263 -7.9527 26 9 1.2761 0.9182 -8.6016 27 6 2.8053 1.1970 -6.8105 28 9 2.0878 2.2430 -6.3455 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.6886 1.8464 0.8900 33 1 1.6886 1.8464 -0.8900 34 1 3.8509 0.5685 0.8426 35 1 3.9785 2.1765 0.0902 36 1 4.7571 -3.3014 0.5885 37 1 6.4247 0.5405 -4.9638 38 1 6.3582 2.0772 -3.9463 39 1 5.5729 -0.5981 -6.1001 40 1 4.8487 -1.7823 -8.1323 41 1 2.8118 -1.0679 -9.3164 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000457202635.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:48:57 Heat of formation + Delta-G solvation = -100.442709 kcal Electronic energy + Delta-G solvation = -27894.559149 eV Core-core repulsion = 23605.451193 eV Total energy + Delta-G solvation = -4289.107956 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.128 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -49.40801 -48.47483 -39.78793 -38.76996 -37.23364 -35.98513 -34.68220 -31.95881 -30.75731 -30.28679 -29.48100 -25.92452 -25.06722 -24.36066 -23.65453 -22.73084 -21.60692 -20.59750 -18.90175 -17.96727 -17.46310 -16.92556 -16.76064 -16.43775 -16.23484 -15.77588 -15.55461 -15.02618 -14.89288 -14.71545 -14.57363 -14.39007 -14.19526 -13.95989 -13.61349 -13.09523 -12.83073 -12.56877 -12.42021 -12.36902 -12.03600 -11.72557 -11.67179 -11.58338 -11.31982 -11.09706 -10.89820 -10.75081 -10.50694 -10.15032 -9.97374 -9.93456 -9.22223 -9.06289 -8.79998 -8.71539 -8.51454 -7.76971 -6.39985 -4.00486 0.90283 0.91487 3.05375 3.16494 3.24713 3.30832 3.51531 3.71885 4.13045 4.20054 4.34119 4.40313 4.46599 4.55799 4.72990 4.89454 4.97915 5.03478 5.25772 5.35069 5.45333 5.62313 5.69190 5.74853 5.76425 5.80454 5.86064 5.90753 5.95046 5.97012 6.03535 6.08597 6.10246 6.18099 6.30172 6.44752 6.47614 6.61184 6.71852 7.37080 7.81330 8.11211 8.26061 8.99244 9.35597 9.65761 10.70698 Molecular weight = 325.13amu Principal moments of inertia in cm(-1) A = 0.013582 B = 0.004028 C = 0.003714 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2061.096693 B = 6949.551929 C = 7537.147445 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.355 6.355 3 C 0.055 3.945 4 C 0.102 3.898 5 N -0.449 5.449 6 C -0.331 4.331 7 H 0.102 0.898 8 C 0.076 3.924 9 N -0.856 5.856 10 Si 0.869 3.131 11 H -0.275 1.275 12 H -0.288 1.288 13 H -0.262 1.262 14 C 0.506 3.494 15 O -0.601 6.601 16 C -0.132 4.132 17 H 0.133 0.867 18 C -0.139 4.139 19 C -0.111 4.111 20 H 0.125 0.875 21 C -0.044 4.044 22 C -0.101 4.101 23 C -0.096 4.096 24 C -0.137 4.137 25 C 0.066 3.934 26 F -0.132 7.132 27 C 0.072 3.928 28 F -0.125 7.125 29 H 0.029 0.971 30 H 0.032 0.968 31 H 0.081 0.919 32 H 0.043 0.957 33 H 0.047 0.953 34 H 0.075 0.925 35 H 0.085 0.915 36 H 0.273 0.727 37 H 0.102 0.898 38 H 0.104 0.896 39 H 0.144 0.856 40 H 0.140 0.860 41 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.765 2.964 -10.775 11.202 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.273 6.273 3 C -0.023 4.023 4 C -0.022 4.022 5 N -0.168 5.168 6 C -0.458 4.458 7 H 0.119 0.881 8 C -0.131 4.131 9 N -0.491 5.491 10 Si 0.696 3.304 11 H -0.202 1.202 12 H -0.214 1.214 13 H -0.186 1.186 14 C 0.296 3.704 15 O -0.487 6.487 16 C -0.153 4.153 17 H 0.151 0.849 18 C -0.176 4.176 19 C -0.130 4.130 20 H 0.143 0.857 21 C -0.045 4.045 22 C -0.119 4.119 23 C -0.114 4.114 24 C -0.156 4.156 25 C 0.046 3.954 26 F -0.111 7.111 27 C 0.052 3.948 28 F -0.104 7.104 29 H 0.048 0.952 30 H 0.051 0.949 31 H 0.099 0.901 32 H 0.061 0.939 33 H 0.065 0.935 34 H 0.093 0.907 35 H 0.103 0.897 36 H 0.083 0.917 37 H 0.121 0.879 38 H 0.123 0.877 39 H 0.162 0.838 40 H 0.158 0.842 41 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -0.728 3.232 -10.584 11.091 hybrid contribution -0.263 0.606 0.828 1.060 sum -0.992 3.839 -9.756 10.531 Atomic orbital electron populations 1.22660 0.83056 1.02112 0.98704 1.88235 1.17641 1.26441 1.94993 1.22866 0.94904 0.85321 0.99201 1.21718 0.92196 0.99018 0.89224 1.43509 1.57056 1.07135 1.09061 1.18868 1.42380 0.78908 1.05646 0.88090 1.25220 0.95842 0.95046 0.97021 1.69764 1.40533 1.08046 1.30800 0.87045 0.81034 0.80416 0.81876 1.20199 1.21434 1.18627 1.19429 0.79419 0.85974 0.85556 1.90535 1.58168 1.14538 1.85500 1.22340 1.02748 1.00505 0.89685 0.84903 1.23022 0.89535 1.03244 1.01791 1.20947 1.01137 1.00338 0.90597 0.85731 1.19218 0.92992 0.96422 0.95841 1.21121 1.00391 0.94237 0.96197 1.21046 0.95697 0.99740 0.94906 1.21028 0.96165 0.96389 1.02016 1.17651 0.86678 0.97968 0.93131 1.91510 1.49091 1.90369 1.80117 1.17467 0.93283 0.89198 0.94901 1.91524 1.76602 1.54277 1.87979 0.95219 0.94925 0.90057 0.93896 0.93494 0.90714 0.89702 0.91715 0.87940 0.87727 0.83820 0.84192 0.83965 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.53 11.01 101.05 1.11 1.64 16 2 O -0.36 -7.71 10.18 -35.23 -0.36 -8.07 16 3 C 0.06 1.11 6.28 37.16 0.23 1.34 16 4 C 0.10 2.26 4.67 -4.04 -0.02 2.24 16 5 N -0.45 -10.74 2.10 -114.81 -0.24 -10.98 16 6 C -0.33 -8.49 8.48 -14.93 -0.13 -8.62 16 7 H 0.10 2.72 6.68 -52.49 -0.35 2.37 16 8 C 0.08 1.99 5.31 -17.47 -0.09 1.90 16 9 N -0.86 -23.50 13.96 55.50 0.77 -22.72 16 10 Si 0.87 20.32 25.07 -169.99 -4.26 16.06 16 11 H -0.28 -6.28 6.74 56.52 0.38 -5.90 16 12 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 13 H -0.26 -6.17 7.11 56.52 0.40 -5.77 16 14 C 0.51 11.60 7.39 -10.99 -0.08 11.52 16 15 O -0.60 -14.64 15.97 5.55 0.09 -14.55 16 16 C -0.13 -2.51 5.17 -91.77 -0.47 -2.99 16 17 H 0.13 2.58 6.29 -51.93 -0.33 2.25 16 18 C -0.14 -2.12 9.47 -26.73 -0.25 -2.37 16 19 C -0.11 -1.84 5.36 -91.77 -0.49 -2.33 16 20 H 0.12 2.26 7.49 -51.93 -0.39 1.87 16 21 C -0.04 -0.63 5.63 -104.57 -0.59 -1.22 16 22 C -0.10 -1.19 9.20 -39.58 -0.36 -1.55 16 23 C -0.10 -0.94 10.04 -39.58 -0.40 -1.33 16 24 C -0.14 -1.44 10.02 -39.52 -0.40 -1.84 16 25 C 0.07 0.88 7.31 -39.37 -0.29 0.60 16 26 F -0.13 -1.86 17.18 2.25 0.04 -1.82 16 27 C 0.07 1.09 7.25 -39.37 -0.29 0.81 16 28 F -0.13 -2.13 16.47 2.25 0.04 -2.10 16 29 H 0.03 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.08 1.25 8.14 -51.93 -0.42 0.83 16 32 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 33 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 34 H 0.07 1.72 3.59 -51.93 -0.19 1.54 16 35 H 0.08 1.80 7.36 -51.93 -0.38 1.42 16 36 H 0.27 7.03 8.31 -40.82 -0.34 6.69 16 37 H 0.10 1.24 6.32 -51.93 -0.33 0.91 16 38 H 0.10 1.64 8.14 -51.93 -0.42 1.22 16 39 H 0.14 1.47 6.17 -52.49 -0.32 1.14 16 40 H 0.14 0.94 8.06 -52.49 -0.42 0.51 16 41 H 0.14 1.11 8.06 -52.49 -0.42 0.69 16 LS Contribution 351.62 15.07 5.30 5.30 Total: -1.00 -30.70 351.62 -5.96 -36.66 By element: Atomic # 1 Polarization: 9.25 SS G_CDS: -4.82 Total: 4.42 kcal Atomic # 6 Polarization: 0.31 SS G_CDS: -2.51 Total: -2.20 kcal Atomic # 7 Polarization: -34.24 SS G_CDS: 0.53 Total: -33.70 kcal Atomic # 8 Polarization: -22.35 SS G_CDS: -0.27 Total: -22.62 kcal Atomic # 9 Polarization: -3.99 SS G_CDS: 0.08 Total: -3.92 kcal Atomic # 14 Polarization: 20.32 SS G_CDS: -4.26 Total: 16.06 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -30.70 -5.96 -36.66 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457202635.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.778 kcal (2) G-P(sol) polarization free energy of solvation -30.705 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.483 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.959 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.664 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.443 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds