Wall clock time and date at job start Tue Mar 31 2020 13:48:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.42903 * 113.99719 * 2 1 4 4 C 1.53003 * 109.46777 * 179.97438 * 3 2 1 5 5 N 1.46503 * 109.46771 * 65.00216 * 4 3 2 6 6 C 1.37098 * 119.99971 * 269.99398 * 5 4 3 7 7 H 1.07996 * 120.00208 * 139.47107 * 6 5 4 8 8 C 1.38949 * 120.00378 * 319.47930 * 6 5 4 9 9 N 1.31410 * 120.00548 * 159.04520 * 8 6 5 10 10 Si 1.86807 * 119.99656 * 339.04422 * 8 6 5 11 11 H 1.48503 * 109.46994 * 96.14372 * 10 8 6 12 12 H 1.48500 * 109.47248 * 216.14691 * 10 8 6 13 13 H 1.48499 * 109.46987 * 336.14715 * 10 8 6 14 14 C 1.34776 * 120.00182 * 89.99809 * 5 4 3 15 15 O 1.21293 * 119.99751 * 4.85929 * 14 5 4 16 16 C 1.50699 * 119.99825 * 184.85392 * 14 5 4 17 17 H 1.08997 * 115.55553 * 11.19626 * 16 14 5 18 18 C 1.53005 * 117.51954 * 225.49032 * 16 14 5 19 19 C 1.53003 * 60.00096 * 252.52306 * 18 16 14 20 20 H 1.09004 * 117.51752 * 107.47980 * 19 18 16 21 21 C 1.50700 * 117.49833 * 252.51012 * 19 18 16 22 22 C 1.38255 * 119.99750 * 13.74656 * 21 19 18 23 23 C 1.38213 * 120.06692 * 180.25736 * 22 21 19 24 24 C 1.38258 * 120.07168 * 359.49194 * 23 22 21 25 25 C 1.38372 * 119.99877 * 0.25395 * 24 23 22 26 26 F 1.35100 * 120.03577 * 180.02562 * 25 24 23 27 27 C 1.38372 * 119.99858 * 193.49767 * 21 19 18 28 28 F 1.35097 * 120.03669 * 359.97286 * 27 21 19 29 29 H 1.08995 * 109.46870 * 300.00059 * 1 2 3 30 30 H 1.08995 * 109.46991 * 60.00208 * 1 2 3 31 31 H 1.09001 * 109.46937 * 180.02562 * 1 2 3 32 32 H 1.08999 * 109.47400 * 60.00073 * 3 2 1 33 33 H 1.08997 * 109.47172 * 299.99977 * 3 2 1 34 34 H 1.08994 * 109.47556 * 305.00276 * 4 3 2 35 35 H 1.08994 * 109.47102 * 184.99721 * 4 3 2 36 36 H 0.97000 * 120.00151 * 179.97438 * 9 8 6 37 37 H 1.08997 * 117.49957 * 145.02891 * 18 16 14 38 38 H 1.09004 * 117.49288 * 0.02562 * 18 16 14 39 39 H 1.08001 * 119.96835 * 0.02562 * 22 21 19 40 40 H 1.08001 * 119.97016 * 179.77190 * 23 22 21 41 41 H 1.07999 * 120.00617 * 180.23613 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1847 0.0006 5 7 3.9766 0.5640 -1.2509 6 6 4.0980 -0.7990 -1.3346 7 1 3.7787 -1.3158 -2.2276 8 6 4.6316 -1.5157 -0.2705 9 7 4.3843 -2.8011 -0.1541 10 14 5.7006 -0.6520 0.9947 11 1 4.8701 -0.2660 2.1637 12 1 6.7825 -1.5680 1.4369 13 1 6.2990 0.5649 0.3892 14 6 4.2633 1.3330 -2.3201 15 8 4.2414 2.5416 -2.2211 16 6 4.6110 0.6910 -3.6384 17 1 4.4265 -0.3814 -3.7023 18 6 5.8162 1.2470 -4.3994 19 6 4.3988 1.5210 -4.9061 20 1 4.0077 2.5314 -4.7865 21 6 3.9508 0.7934 -6.1474 22 6 4.6814 -0.2807 -6.6206 23 6 4.2747 -0.9458 -7.7620 24 6 3.1307 -0.5450 -8.4268 25 6 2.3944 0.5263 -7.9527 26 9 1.2761 0.9182 -8.6016 27 6 2.8053 1.1970 -6.8105 28 9 2.0878 2.2430 -6.3455 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.6886 1.8464 0.8900 33 1 1.6886 1.8464 -0.8900 34 1 3.8509 0.5685 0.8426 35 1 3.9785 2.1765 0.0902 36 1 4.7571 -3.3014 0.5885 37 1 6.4247 0.5405 -4.9638 38 1 6.3582 2.0772 -3.9463 39 1 5.5729 -0.5981 -6.1001 40 1 4.8487 -1.7823 -8.1323 41 1 2.8118 -1.0679 -9.3164 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000457202635.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:48:57 Heat of formation + Delta-G solvation = -118.260508 kcal Electronic energy + Delta-G solvation = -27895.331787 eV Core-core repulsion = 23605.451193 eV Total energy + Delta-G solvation = -4289.880594 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.128 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -50.52065 -49.61073 -41.25336 -40.09373 -38.75758 -37.40246 -36.49754 -33.92699 -31.86457 -31.30947 -31.01665 -27.34753 -26.93267 -25.63697 -25.08159 -23.76870 -23.14749 -21.78261 -20.73299 -19.09985 -18.90694 -18.43384 -17.97940 -17.83179 -17.47636 -17.35632 -17.07307 -16.41366 -16.23083 -16.04939 -15.98483 -15.83727 -15.45566 -15.39000 -15.13142 -14.66482 -14.43536 -14.03145 -13.68538 -13.47385 -13.40065 -13.31621 -13.18568 -13.02291 -12.64440 -12.54534 -12.44641 -12.18475 -12.00009 -11.74872 -11.64897 -11.41372 -11.09095 -10.64435 -10.46281 -9.75694 -9.73248 -9.65088 -8.40703 -6.02537 -0.07256 -0.05466 1.21717 1.33077 1.44126 1.67834 2.24673 2.32585 2.51365 2.73356 2.88414 3.01442 3.20110 3.30869 3.48673 3.70642 3.85631 3.92920 3.98728 4.04922 4.13568 4.17073 4.24109 4.34186 4.37087 4.49816 4.51688 4.59487 4.73394 4.76137 4.80728 4.82425 4.86585 4.98209 5.02128 5.13943 5.23936 5.36798 5.49099 5.78011 6.12268 6.26504 6.35969 7.03645 7.43785 7.77265 8.73307 Molecular weight = 325.13amu Principal moments of inertia in cm(-1) A = 0.013582 B = 0.004028 C = 0.003714 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2061.096693 B = 6949.551929 C = 7537.147445 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.395 6.395 3 C 0.060 3.940 4 C 0.092 3.908 5 N -0.461 5.461 6 C -0.321 4.321 7 H 0.079 0.921 8 C 0.041 3.959 9 N -0.893 5.893 10 Si 0.918 3.082 11 H -0.266 1.266 12 H -0.282 1.282 13 H -0.267 1.267 14 C 0.500 3.500 15 O -0.621 6.621 16 C -0.161 4.161 17 H 0.127 0.873 18 C -0.111 4.111 19 C -0.100 4.100 20 H 0.099 0.901 21 C -0.062 4.062 22 C -0.099 4.099 23 C -0.079 4.079 24 C -0.122 4.122 25 C 0.050 3.950 26 F -0.141 7.141 27 C 0.038 3.962 28 F -0.148 7.148 29 H 0.057 0.943 30 H 0.038 0.962 31 H 0.088 0.912 32 H 0.078 0.922 33 H 0.037 0.963 34 H 0.067 0.933 35 H 0.091 0.909 36 H 0.276 0.724 37 H 0.143 0.857 38 H 0.100 0.900 39 H 0.163 0.837 40 H 0.184 0.816 41 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.282 2.127 -11.931 12.123 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.313 6.313 3 C -0.018 4.018 4 C -0.031 4.031 5 N -0.180 5.180 6 C -0.448 4.448 7 H 0.096 0.904 8 C -0.164 4.164 9 N -0.530 5.530 10 Si 0.744 3.256 11 H -0.193 1.193 12 H -0.209 1.209 13 H -0.191 1.191 14 C 0.291 3.709 15 O -0.509 6.509 16 C -0.182 4.182 17 H 0.144 0.856 18 C -0.148 4.148 19 C -0.119 4.119 20 H 0.117 0.883 21 C -0.063 4.063 22 C -0.117 4.117 23 C -0.096 4.096 24 C -0.140 4.140 25 C 0.030 3.970 26 F -0.120 7.120 27 C 0.018 3.982 28 F -0.127 7.127 29 H 0.075 0.925 30 H 0.056 0.944 31 H 0.106 0.894 32 H 0.096 0.904 33 H 0.055 0.945 34 H 0.085 0.915 35 H 0.109 0.891 36 H 0.086 0.914 37 H 0.161 0.839 38 H 0.118 0.882 39 H 0.181 0.819 40 H 0.202 0.798 41 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges 0.309 2.406 -11.739 11.987 hybrid contribution -0.654 0.873 1.079 1.534 sum -0.345 3.279 -10.661 11.159 Atomic orbital electron populations 1.22858 0.80600 1.03166 1.00293 1.88161 1.20491 1.27377 1.95312 1.22808 0.93439 0.85157 1.00356 1.21850 0.93987 0.98897 0.88326 1.43621 1.57806 1.06620 1.09985 1.18666 1.41705 0.79611 1.04850 0.90367 1.25682 0.96645 0.95430 0.98619 1.69828 1.42008 1.09220 1.31991 0.86258 0.79750 0.79260 0.80297 1.19269 1.20873 1.19133 1.20090 0.78341 0.85864 0.86560 1.90506 1.58934 1.15378 1.86067 1.22220 1.06857 1.00172 0.88940 0.85559 1.23215 0.88862 1.03034 0.99706 1.20773 1.02035 0.98761 0.90298 0.88293 1.19172 0.93747 0.97919 0.95481 1.21437 1.00466 0.92970 0.96788 1.21549 0.95055 0.99739 0.93286 1.21496 0.95373 0.94640 1.02501 1.17949 0.87078 0.99004 0.92974 1.91484 1.49678 1.90655 1.80152 1.17877 0.94123 0.89729 0.96433 1.91454 1.77253 1.55490 1.88472 0.92470 0.94375 0.89373 0.90405 0.94462 0.91473 0.89120 0.91426 0.83942 0.88161 0.81920 0.79831 0.80579 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.87 11.01 113.37 1.25 2.12 16 2 O -0.39 -17.10 10.18 -148.98 -1.52 -18.62 16 3 C 0.06 2.39 6.28 71.98 0.45 2.84 16 4 C 0.09 4.11 4.67 86.38 0.40 4.51 16 5 N -0.46 -22.41 2.10 -635.55 -1.33 -23.74 16 6 C -0.32 -16.77 8.48 84.04 0.71 -16.06 16 7 H 0.08 4.37 6.68 -2.91 -0.02 4.35 16 8 C 0.04 2.14 5.31 84.93 0.45 2.59 16 9 N -0.89 -49.53 13.96 21.66 0.30 -49.23 16 10 Si 0.92 41.83 25.07 68.60 1.72 43.55 16 11 H -0.27 -11.67 6.74 99.48 0.67 -11.00 16 12 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 13 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16 14 C 0.50 23.41 7.39 87.66 0.65 24.06 16 15 O -0.62 -30.93 15.97 -3.07 -0.05 -30.98 16 16 C -0.16 -6.20 5.17 -11.54 -0.06 -6.26 16 17 H 0.13 4.99 6.29 -2.39 -0.02 4.98 16 18 C -0.11 -3.26 9.47 30.60 0.29 -2.97 16 19 C -0.10 -3.32 5.36 -11.54 -0.06 -3.39 16 20 H 0.10 3.78 7.49 -2.38 -0.02 3.76 16 21 C -0.06 -1.77 5.63 -19.83 -0.11 -1.88 16 22 C -0.10 -2.03 9.20 22.27 0.20 -1.82 16 23 C -0.08 -1.19 10.04 22.27 0.22 -0.96 16 24 C -0.12 -2.13 10.02 22.31 0.22 -1.91 16 25 C 0.05 1.29 7.31 22.41 0.16 1.46 16 26 F -0.14 -3.92 17.18 44.97 0.77 -3.15 16 27 C 0.04 1.18 7.25 22.41 0.16 1.35 16 28 F -0.15 -5.35 16.47 44.97 0.74 -4.60 16 29 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 30 H 0.04 1.16 8.14 -2.39 -0.02 1.14 16 31 H 0.09 2.66 8.14 -2.39 -0.02 2.64 16 32 H 0.08 2.52 8.14 -2.39 -0.02 2.50 16 33 H 0.04 1.53 8.14 -2.39 -0.02 1.51 16 34 H 0.07 3.07 3.59 -2.39 -0.01 3.06 16 35 H 0.09 3.85 7.36 -2.39 -0.02 3.83 16 36 H 0.28 14.33 8.31 -92.71 -0.77 13.56 16 37 H 0.14 2.97 6.32 -2.39 -0.02 2.95 16 38 H 0.10 3.05 8.14 -2.39 -0.02 3.03 16 39 H 0.16 2.66 6.17 -2.91 -0.02 2.65 16 40 H 0.18 1.26 8.06 -2.91 -0.02 1.24 16 41 H 0.18 1.89 8.06 -2.91 -0.02 1.87 16 Total: -1.00 -69.50 351.62 6.62 -62.88 By element: Atomic # 1 Polarization: 19.18 SS G_CDS: 1.04 Total: 20.21 kcal Atomic # 6 Polarization: -1.27 SS G_CDS: 4.95 Total: 3.68 kcal Atomic # 7 Polarization: -71.94 SS G_CDS: -1.03 Total: -72.97 kcal Atomic # 8 Polarization: -48.03 SS G_CDS: -1.57 Total: -49.60 kcal Atomic # 9 Polarization: -9.27 SS G_CDS: 1.51 Total: -7.75 kcal Atomic # 14 Polarization: 41.83 SS G_CDS: 1.72 Total: 43.55 kcal Total: -69.50 6.62 -62.88 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457202635.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.380 kcal (2) G-P(sol) polarization free energy of solvation -69.505 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.885 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.624 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.880 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.261 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds