Wall clock time and date at job start Tue Mar 31 2020 14:22:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.32569 * 119.99522 * 2 1 4 4 C 1.47816 * 119.99757 * 186.73288 * 3 2 1 5 5 C 1.39548 * 120.14502 * 317.02824 * 4 3 2 6 6 C 1.37954 * 119.85634 * 179.69922 * 5 4 3 7 7 C 1.38355 * 120.14283 * 0.59097 * 6 5 4 8 8 C 1.38327 * 120.28664 * 359.68359 * 7 6 5 9 9 C 1.37996 * 120.14125 * 0.02562 * 8 7 6 10 10 C 1.50692 * 120.07243 * 179.97438 * 9 8 7 11 11 F 1.39894 * 109.47330 * 0.02639 * 10 9 8 12 12 F 1.39897 * 109.47215 * 120.02502 * 10 9 8 13 13 F 1.39901 * 109.47468 * 240.02515 * 10 9 8 14 14 C 1.50699 * 120.00345 * 180.02562 * 2 1 3 15 15 N 1.46505 * 109.46735 * 296.77808 * 14 2 1 16 16 C 1.36940 * 119.99678 * 264.00630 * 15 14 2 17 17 H 1.08001 * 120.00082 * 302.24829 * 16 15 14 18 18 C 1.38813 * 120.00045 * 122.24894 * 16 15 14 19 19 N 1.31622 * 120.00143 * 185.94735 * 18 16 15 20 20 Si 1.86799 * 119.99825 * 5.94720 * 18 16 15 21 21 H 1.48504 * 109.47119 * 95.61089 * 20 18 16 22 22 H 1.48496 * 109.47138 * 215.61052 * 20 18 16 23 23 H 1.48496 * 109.47344 * 335.61308 * 20 18 16 24 24 C 1.46493 * 120.00141 * 84.00624 * 15 14 2 25 25 C 1.52993 * 117.49857 * 181.32748 * 24 15 14 26 26 C 1.52997 * 117.50067 * 112.70303 * 24 15 14 27 27 H 1.08997 * 109.46430 * 269.99403 * 1 2 3 28 28 H 1.08999 * 109.47160 * 29.99548 * 1 2 3 29 29 H 1.09004 * 109.46784 * 149.99858 * 1 2 3 30 30 H 1.07993 * 120.00231 * 6.74154 * 3 2 1 31 31 H 1.08001 * 120.07016 * 359.97438 * 5 4 3 32 32 H 1.08002 * 119.93085 * 180.31792 * 6 5 4 33 33 H 1.08003 * 119.86159 * 179.70123 * 7 6 5 34 34 H 1.08004 * 119.93019 * 179.97438 * 8 7 6 35 35 H 1.09000 * 109.46965 * 176.78289 * 14 2 1 36 36 H 1.09001 * 109.47236 * 56.77494 * 14 2 1 37 37 H 0.96997 * 119.99697 * 180.02562 * 19 18 16 38 38 H 1.09003 * 115.54737 * 327.03427 * 24 15 14 39 39 H 1.08998 * 117.50105 * 359.97438 * 25 24 15 40 40 H 1.09003 * 117.49966 * 145.02238 * 25 24 15 41 41 H 1.08999 * 117.50426 * 214.97947 * 26 24 15 42 42 H 1.09000 * 117.49680 * 359.97438 * 26 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1698 1.1481 0.0000 4 6 3.6403 1.1526 -0.1501 5 6 4.4184 0.2251 0.5439 6 6 5.7898 0.2306 0.3946 7 6 6.3950 1.1609 -0.4315 8 6 5.6299 2.0867 -1.1178 9 6 4.2567 2.0880 -0.9818 10 6 3.4247 3.0976 -1.7297 11 9 4.2623 3.9199 -2.4909 12 9 2.5316 2.4312 -2.5754 13 9 2.7079 3.8791 -0.8172 14 6 2.2606 -1.3050 -0.0006 15 7 1.9658 -2.0396 1.2323 16 6 2.8145 -1.9484 2.3031 17 1 3.8529 -2.2243 2.1942 18 6 2.3400 -1.5013 3.5286 19 7 3.1763 -1.3018 4.5252 20 14 0.5144 -1.1827 3.7634 21 1 -0.1233 -2.3798 4.3679 22 1 0.3272 -0.0153 4.6619 23 1 -0.1121 -0.8997 2.4471 24 6 0.7633 -2.8717 1.3194 25 6 0.4950 -3.5889 2.6439 26 6 0.9578 -4.3857 1.4226 27 1 -0.3632 -0.0001 1.0277 28 1 -0.3633 0.8900 -0.5138 29 1 -0.3633 -0.8900 -0.5139 30 1 1.6354 2.0801 0.1098 31 1 3.9476 -0.4984 1.1930 32 1 6.3927 -0.4900 0.9272 33 1 7.4694 1.1642 -0.5413 34 1 6.1084 2.8106 -1.7608 35 1 3.3308 -1.1066 -0.0582 36 1 1.9547 -1.9009 -0.8605 37 1 2.8447 -0.9898 5.3816 38 1 -0.0989 -2.5121 0.7577 39 1 1.2134 -3.4419 3.4504 40 1 -0.5440 -3.7012 2.9540 41 1 0.2234 -5.0224 0.9292 42 1 1.9805 -4.7627 1.4252 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000503953346.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:22:47 Heat of formation + Delta-G solvation = -36.736046 kcal Electronic energy + Delta-G solvation = -28969.064092 eV Core-core repulsion = 24695.091454 eV Total energy + Delta-G solvation = -4273.972638 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.135 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -49.95702 -47.50511 -47.36693 -39.42385 -37.67784 -35.48049 -32.84143 -31.90515 -31.14125 -30.67060 -26.76190 -26.16162 -25.29511 -23.88102 -21.96385 -21.73706 -21.44316 -20.04409 -18.55688 -18.25785 -18.15894 -17.39345 -16.99906 -15.74093 -15.47139 -14.94738 -14.67509 -14.58795 -14.35993 -14.18908 -13.92342 -13.88541 -13.66321 -13.57260 -13.46942 -13.43170 -13.14406 -12.76274 -12.42439 -12.32993 -12.11217 -11.83935 -11.75235 -11.48062 -11.06686 -10.90723 -10.79951 -10.54268 -10.40116 -10.01624 -9.72285 -9.37253 -9.25331 -9.06041 -8.74221 -8.56451 -7.73140 -6.59902 -6.09141 -3.91748 1.16060 1.51970 2.73008 2.91236 3.29891 3.43467 3.45603 3.88678 3.98405 4.28248 4.39771 4.68497 4.73990 4.89930 4.99698 5.08572 5.15742 5.40860 5.52261 5.55336 5.64966 5.72727 5.82869 5.90509 5.98489 6.01525 6.06159 6.08972 6.23920 6.35977 6.38029 6.41722 6.47502 6.49428 6.63229 6.75916 6.84708 6.88105 7.05939 7.10408 7.24268 7.38753 7.97448 8.34166 8.82967 9.47542 9.99436 10.92284 Molecular weight = 325.13amu Principal moments of inertia in cm(-1) A = 0.016285 B = 0.004802 C = 0.004435 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1718.921423 B = 5829.658175 C = 6311.240990 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.076 4.076 3 C -0.178 4.178 4 C 0.016 3.984 5 C -0.122 4.122 6 C -0.089 4.089 7 C -0.135 4.135 8 C -0.086 4.086 9 C -0.193 4.193 10 C 0.512 3.488 11 F -0.185 7.185 12 F -0.176 7.176 13 F -0.179 7.179 14 C 0.148 3.852 15 N -0.566 5.566 16 C -0.295 4.295 17 H 0.076 0.924 18 C 0.056 3.944 19 N -0.890 5.890 20 Si 0.895 3.105 21 H -0.279 1.279 22 H -0.314 1.314 23 H -0.246 1.246 24 C 0.117 3.883 25 C -0.218 4.218 26 C -0.210 4.210 27 H 0.081 0.919 28 H 0.055 0.945 29 H 0.061 0.939 30 H 0.115 0.885 31 H 0.193 0.807 32 H 0.129 0.871 33 H 0.125 0.875 34 H 0.129 0.871 35 H 0.094 0.906 36 H 0.045 0.955 37 H 0.267 0.733 38 H 0.091 0.909 39 H 0.116 0.884 40 H 0.078 0.922 41 H 0.073 0.927 42 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.424 4.496 -10.946 11.841 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.079 4.079 3 C -0.197 4.197 4 C 0.016 3.984 5 C -0.139 4.139 6 C -0.107 4.107 7 C -0.153 4.153 8 C -0.105 4.105 9 C -0.194 4.194 10 C 0.458 3.542 11 F -0.167 7.167 12 F -0.157 7.157 13 F -0.160 7.160 14 C 0.024 3.976 15 N -0.285 5.285 16 C -0.423 4.423 17 H 0.093 0.907 18 C -0.149 4.149 19 N -0.526 5.526 20 Si 0.727 3.273 21 H -0.205 1.205 22 H -0.243 1.243 23 H -0.171 1.171 24 C 0.009 3.991 25 C -0.256 4.256 26 C -0.251 4.251 27 H 0.099 0.901 28 H 0.074 0.926 29 H 0.080 0.920 30 H 0.133 0.867 31 H 0.209 0.791 32 H 0.147 0.853 33 H 0.143 0.857 34 H 0.146 0.854 35 H 0.111 0.889 36 H 0.063 0.937 37 H 0.076 0.924 38 H 0.109 0.891 39 H 0.134 0.866 40 H 0.096 0.904 41 H 0.091 0.909 42 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 0.467 4.568 -10.788 11.724 hybrid contribution -1.129 0.437 0.412 1.279 sum -0.663 5.005 -10.376 11.539 Atomic orbital electron populations 1.21059 0.92704 1.01292 1.02973 1.23054 0.95876 0.96740 0.92225 1.21266 0.91138 0.98224 1.09096 1.18812 0.93974 0.92704 0.92932 1.22905 0.93722 0.98506 0.98761 1.21422 0.95264 0.97611 0.96439 1.21109 0.99696 0.96199 0.98326 1.20737 0.91665 0.98868 0.99185 1.19968 0.94443 1.00236 1.04798 1.18298 0.78309 0.80296 0.77283 1.93118 1.71568 1.74592 1.77389 1.93203 1.69780 1.80378 1.72354 1.93181 1.79491 1.76488 1.66882 1.20811 0.99646 0.88073 0.89080 1.43471 1.24077 1.48234 1.12762 1.18469 0.92855 1.42765 0.88228 0.90685 1.26006 0.98533 0.93597 0.96761 1.69815 1.34869 1.44661 1.03302 0.86867 0.85877 0.75939 0.78656 1.20526 1.24324 1.17111 1.21375 0.91729 0.88321 0.97635 1.23566 1.01033 1.06998 0.93955 1.23369 1.01440 0.97471 1.02801 0.90074 0.92598 0.92004 0.86674 0.79104 0.85267 0.85718 0.85362 0.88866 0.93651 0.92362 0.89108 0.86588 0.90386 0.90867 0.89138 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.02 8.94 36.01 0.32 -1.69 16 2 C -0.08 -1.38 5.69 -101.25 -0.58 -1.96 16 3 C -0.18 -3.23 7.78 -37.57 -0.29 -3.52 16 4 C 0.02 0.29 5.36 -105.01 -0.56 -0.28 16 5 C -0.12 -2.25 7.29 -39.20 -0.29 -2.54 16 6 C -0.09 -1.40 10.03 -39.64 -0.40 -1.80 16 7 C -0.14 -1.83 10.04 -39.51 -0.40 -2.23 16 8 C -0.09 -1.21 9.42 -39.64 -0.37 -1.58 16 9 C -0.19 -3.08 5.40 -104.24 -0.56 -3.64 16 10 C 0.51 7.77 2.89 36.00 0.10 7.88 16 11 F -0.19 -2.58 15.97 2.25 0.04 -2.55 16 12 F -0.18 -2.73 16.52 2.25 0.04 -2.69 16 13 F -0.18 -2.83 15.76 2.25 0.04 -2.79 16 14 C 0.15 2.79 5.34 -5.19 -0.03 2.77 16 15 N -0.57 -12.00 2.23 -167.03 -0.37 -12.37 16 16 C -0.30 -7.27 7.13 -15.06 -0.11 -7.38 16 17 H 0.08 2.03 7.67 -52.49 -0.40 1.62 16 18 C 0.06 1.46 4.61 -17.43 -0.08 1.38 16 19 N -0.89 -25.02 13.97 55.49 0.78 -24.25 16 20 Si 0.90 20.93 23.20 -169.99 -3.94 16.98 16 21 H -0.28 -6.35 5.66 56.52 0.32 -6.03 16 22 H -0.31 -7.84 7.11 56.52 0.40 -7.44 16 23 H -0.25 -5.30 3.61 56.52 0.20 -5.10 16 24 C 0.12 2.29 4.10 -67.94 -0.28 2.01 16 25 C -0.22 -4.43 5.92 -26.74 -0.16 -4.59 16 26 C -0.21 -3.86 10.38 -26.73 -0.28 -4.13 16 27 H 0.08 1.45 5.53 -51.93 -0.29 1.16 16 28 H 0.06 0.80 8.07 -51.93 -0.42 0.38 16 29 H 0.06 0.91 7.22 -51.93 -0.38 0.54 16 30 H 0.12 2.03 6.78 -52.49 -0.36 1.67 16 31 H 0.19 4.06 3.11 -52.49 -0.16 3.89 16 32 H 0.13 1.86 8.06 -52.49 -0.42 1.44 16 33 H 0.12 1.31 8.06 -52.48 -0.42 0.88 16 34 H 0.13 1.49 7.15 -52.48 -0.38 1.12 16 35 H 0.09 1.78 3.51 -51.93 -0.18 1.60 16 36 H 0.05 0.79 8.12 -51.93 -0.42 0.37 16 37 H 0.27 7.24 8.31 -40.82 -0.34 6.90 16 38 H 0.09 1.64 6.49 -51.93 -0.34 1.30 16 39 H 0.12 2.73 4.75 -51.93 -0.25 2.48 16 40 H 0.08 1.47 7.53 -51.93 -0.39 1.08 16 41 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 42 H 0.09 1.76 8.14 -51.93 -0.42 1.34 16 LS Contribution 331.00 15.07 4.99 4.99 Total: -1.00 -26.57 331.00 -7.46 -34.03 By element: Atomic # 1 Polarization: 15.01 SS G_CDS: -5.06 Total: 9.95 kcal Atomic # 6 Polarization: -17.35 SS G_CDS: -3.95 Total: -21.30 kcal Atomic # 7 Polarization: -37.02 SS G_CDS: 0.40 Total: -36.62 kcal Atomic # 9 Polarization: -8.14 SS G_CDS: 0.11 Total: -8.03 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -3.94 Total: 16.98 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -26.57 -7.46 -34.03 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000503953346.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.711 kcal (2) G-P(sol) polarization free energy of solvation -26.567 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.278 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.458 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.025 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.736 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds