Wall clock time and date at job start Tue Mar 31 2020 14:22:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.32569 * 119.99522 * 2 1 4 4 C 1.47816 * 119.99757 * 186.73288 * 3 2 1 5 5 C 1.39548 * 120.14502 * 317.02824 * 4 3 2 6 6 C 1.37954 * 119.85634 * 179.69922 * 5 4 3 7 7 C 1.38355 * 120.14283 * 0.59097 * 6 5 4 8 8 C 1.38327 * 120.28664 * 359.68359 * 7 6 5 9 9 C 1.37996 * 120.14125 * 0.02562 * 8 7 6 10 10 C 1.50692 * 120.07243 * 179.97438 * 9 8 7 11 11 F 1.39894 * 109.47330 * 0.02639 * 10 9 8 12 12 F 1.39897 * 109.47215 * 120.02502 * 10 9 8 13 13 F 1.39901 * 109.47468 * 240.02515 * 10 9 8 14 14 C 1.50699 * 120.00345 * 180.02562 * 2 1 3 15 15 N 1.46505 * 109.46735 * 296.77808 * 14 2 1 16 16 C 1.36940 * 119.99678 * 264.00630 * 15 14 2 17 17 H 1.08001 * 120.00082 * 302.24829 * 16 15 14 18 18 C 1.38813 * 120.00045 * 122.24894 * 16 15 14 19 19 N 1.31622 * 120.00143 * 185.94735 * 18 16 15 20 20 Si 1.86799 * 119.99825 * 5.94720 * 18 16 15 21 21 H 1.48504 * 109.47119 * 95.61089 * 20 18 16 22 22 H 1.48496 * 109.47138 * 215.61052 * 20 18 16 23 23 H 1.48496 * 109.47344 * 335.61308 * 20 18 16 24 24 C 1.46493 * 120.00141 * 84.00624 * 15 14 2 25 25 C 1.52993 * 117.49857 * 181.32748 * 24 15 14 26 26 C 1.52997 * 117.50067 * 112.70303 * 24 15 14 27 27 H 1.08997 * 109.46430 * 269.99403 * 1 2 3 28 28 H 1.08999 * 109.47160 * 29.99548 * 1 2 3 29 29 H 1.09004 * 109.46784 * 149.99858 * 1 2 3 30 30 H 1.07993 * 120.00231 * 6.74154 * 3 2 1 31 31 H 1.08001 * 120.07016 * 359.97438 * 5 4 3 32 32 H 1.08002 * 119.93085 * 180.31792 * 6 5 4 33 33 H 1.08003 * 119.86159 * 179.70123 * 7 6 5 34 34 H 1.08004 * 119.93019 * 179.97438 * 8 7 6 35 35 H 1.09000 * 109.46965 * 176.78289 * 14 2 1 36 36 H 1.09001 * 109.47236 * 56.77494 * 14 2 1 37 37 H 0.96997 * 119.99697 * 180.02562 * 19 18 16 38 38 H 1.09003 * 115.54737 * 327.03427 * 24 15 14 39 39 H 1.08998 * 117.50105 * 359.97438 * 25 24 15 40 40 H 1.09003 * 117.49966 * 145.02238 * 25 24 15 41 41 H 1.08999 * 117.50426 * 214.97947 * 26 24 15 42 42 H 1.09000 * 117.49680 * 359.97438 * 26 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1698 1.1481 0.0000 4 6 3.6403 1.1526 -0.1501 5 6 4.4184 0.2251 0.5439 6 6 5.7898 0.2306 0.3946 7 6 6.3950 1.1609 -0.4315 8 6 5.6299 2.0867 -1.1178 9 6 4.2567 2.0880 -0.9818 10 6 3.4247 3.0976 -1.7297 11 9 4.2623 3.9199 -2.4909 12 9 2.5316 2.4312 -2.5754 13 9 2.7079 3.8791 -0.8172 14 6 2.2606 -1.3050 -0.0006 15 7 1.9658 -2.0396 1.2323 16 6 2.8145 -1.9484 2.3031 17 1 3.8529 -2.2243 2.1942 18 6 2.3400 -1.5013 3.5286 19 7 3.1763 -1.3018 4.5252 20 14 0.5144 -1.1827 3.7634 21 1 -0.1233 -2.3798 4.3679 22 1 0.3272 -0.0153 4.6619 23 1 -0.1121 -0.8997 2.4471 24 6 0.7633 -2.8717 1.3194 25 6 0.4950 -3.5889 2.6439 26 6 0.9578 -4.3857 1.4226 27 1 -0.3632 -0.0001 1.0277 28 1 -0.3633 0.8900 -0.5138 29 1 -0.3633 -0.8900 -0.5139 30 1 1.6354 2.0801 0.1098 31 1 3.9476 -0.4984 1.1930 32 1 6.3927 -0.4900 0.9272 33 1 7.4694 1.1642 -0.5413 34 1 6.1084 2.8106 -1.7608 35 1 3.3308 -1.1066 -0.0582 36 1 1.9547 -1.9009 -0.8605 37 1 2.8447 -0.9898 5.3816 38 1 -0.0989 -2.5121 0.7577 39 1 1.2134 -3.4419 3.4504 40 1 -0.5440 -3.7012 2.9540 41 1 0.2234 -5.0224 0.9292 42 1 1.9805 -4.7627 1.4252 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000503953346.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:22:46 Heat of formation + Delta-G solvation = -48.831773 kcal Electronic energy + Delta-G solvation = -28969.588602 eV Core-core repulsion = 24695.091454 eV Total energy + Delta-G solvation = -4274.497148 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.135 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -51.14746 -48.67350 -48.57921 -40.72691 -39.22904 -36.87037 -34.61831 -33.39150 -32.60914 -32.00655 -28.04176 -27.82503 -26.53178 -25.53053 -23.51382 -23.06351 -22.66881 -21.75593 -19.86031 -19.45754 -19.34617 -18.95021 -18.55280 -17.11756 -16.97638 -16.48214 -16.12543 -15.89559 -15.59805 -15.56079 -15.42925 -15.10504 -14.95356 -14.86951 -14.80576 -14.75835 -14.64678 -14.26278 -13.79367 -13.62535 -13.56027 -13.41825 -13.11489 -12.97029 -12.58722 -12.31067 -12.23222 -12.07205 -12.03737 -11.68632 -11.30990 -11.05829 -10.77703 -10.54359 -10.44452 -9.99050 -9.06729 -8.42329 -8.02146 -5.89863 -0.09550 0.27294 1.34892 1.42767 1.50512 1.60253 1.70838 2.47646 2.63552 2.77679 3.06184 3.10430 3.24563 3.31590 3.48087 3.74813 4.02890 4.12172 4.20201 4.23495 4.26086 4.32429 4.42695 4.48782 4.59677 4.67869 4.77664 4.84589 4.86646 4.90036 4.99007 5.09325 5.12442 5.18325 5.28570 5.29831 5.45121 5.48308 5.58763 5.74093 5.90216 5.97084 6.06619 6.30265 7.09328 7.56774 8.10571 8.94425 Molecular weight = 325.13amu Principal moments of inertia in cm(-1) A = 0.016285 B = 0.004802 C = 0.004435 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1718.921423 B = 5829.658175 C = 6311.240990 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.088 4.088 3 C -0.181 4.181 4 C -0.003 4.003 5 C -0.147 4.147 6 C -0.097 4.097 7 C -0.120 4.120 8 C -0.080 4.080 9 C -0.199 4.199 10 C 0.517 3.483 11 F -0.175 7.175 12 F -0.178 7.178 13 F -0.184 7.184 14 C 0.148 3.852 15 N -0.575 5.575 16 C -0.264 4.264 17 H 0.039 0.961 18 C 0.008 3.992 19 N -0.941 5.941 20 Si 0.939 3.061 21 H -0.270 1.270 22 H -0.340 1.340 23 H -0.215 1.215 24 C 0.109 3.891 25 C -0.234 4.234 26 C -0.189 4.189 27 H 0.066 0.934 28 H 0.073 0.927 29 H 0.079 0.921 30 H 0.118 0.882 31 H 0.159 0.841 32 H 0.134 0.866 33 H 0.164 0.836 34 H 0.159 0.841 35 H 0.087 0.913 36 H 0.063 0.937 37 H 0.260 0.740 38 H 0.119 0.881 39 H 0.079 0.921 40 H 0.098 0.902 41 H 0.111 0.889 42 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.316 4.908 -13.659 14.518 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.091 4.091 3 C -0.201 4.201 4 C -0.003 4.003 5 C -0.164 4.164 6 C -0.115 4.115 7 C -0.138 4.138 8 C -0.098 4.098 9 C -0.201 4.201 10 C 0.463 3.537 11 F -0.156 7.156 12 F -0.159 7.159 13 F -0.166 7.166 14 C 0.024 3.976 15 N -0.295 5.295 16 C -0.393 4.393 17 H 0.056 0.944 18 C -0.191 4.191 19 N -0.581 5.581 20 Si 0.769 3.231 21 H -0.196 1.196 22 H -0.272 1.272 23 H -0.138 1.138 24 C 0.002 3.998 25 C -0.272 4.272 26 C -0.229 4.229 27 H 0.084 0.916 28 H 0.092 0.908 29 H 0.098 0.902 30 H 0.136 0.864 31 H 0.176 0.824 32 H 0.152 0.848 33 H 0.182 0.818 34 H 0.177 0.823 35 H 0.104 0.896 36 H 0.082 0.918 37 H 0.069 0.931 38 H 0.137 0.863 39 H 0.097 0.903 40 H 0.116 0.884 41 H 0.129 0.871 42 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -0.291 4.958 -13.552 14.433 hybrid contribution -0.727 0.302 1.133 1.379 sum -1.018 5.260 -12.419 13.526 Atomic orbital electron populations 1.21059 0.91085 1.03188 1.02364 1.23129 0.97051 0.96115 0.92779 1.21449 0.91661 0.98431 1.08534 1.18825 0.93863 0.93584 0.94055 1.22590 0.95105 0.99059 0.99652 1.21579 0.94359 0.98512 0.97074 1.21483 1.01571 0.94425 0.96325 1.21153 0.90882 0.98977 0.98745 1.20124 0.95497 0.99904 1.04551 1.18163 0.78206 0.80170 0.77186 1.93135 1.71198 1.74244 1.77064 1.93197 1.69888 1.80467 1.72359 1.93173 1.79639 1.76583 1.67159 1.20805 0.99801 0.88677 0.88301 1.43500 1.24135 1.49468 1.12430 1.18156 0.91885 1.40222 0.89029 0.94384 1.26571 1.01711 0.94143 0.96686 1.69944 1.36484 1.47915 1.03799 0.86215 0.82607 0.74833 0.79459 1.19585 1.27230 1.13780 1.21624 0.91635 0.89026 0.97492 1.23482 1.01267 1.08890 0.93533 1.23368 1.01459 0.97008 1.01079 0.91577 0.90790 0.90200 0.86436 0.82385 0.84797 0.81843 0.82341 0.89559 0.91848 0.93077 0.86323 0.90276 0.88369 0.87090 0.90900 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.60 8.94 71.24 0.64 -2.97 16 2 C -0.09 -3.10 5.69 -17.60 -0.10 -3.20 16 3 C -0.18 -6.48 7.78 23.65 0.18 -6.30 16 4 C 0.00 -0.11 5.36 -20.12 -0.11 -0.21 16 5 C -0.15 -5.52 7.29 22.52 0.16 -5.36 16 6 C -0.10 -3.03 10.03 22.23 0.22 -2.80 16 7 C -0.12 -2.93 10.04 22.32 0.22 -2.71 16 8 C -0.08 -1.99 9.42 22.23 0.21 -1.78 16 9 C -0.20 -6.02 5.40 -19.62 -0.11 -6.12 16 10 C 0.52 14.65 2.89 71.23 0.21 14.86 16 11 F -0.18 -4.39 15.97 44.97 0.72 -3.67 16 12 F -0.18 -5.18 16.52 44.97 0.74 -4.43 16 13 F -0.18 -5.55 15.76 44.97 0.71 -4.84 16 14 C 0.15 5.47 5.34 85.63 0.46 5.93 16 15 N -0.58 -24.21 2.23 -682.36 -1.52 -25.73 16 16 C -0.26 -13.49 7.13 84.03 0.60 -12.89 16 17 H 0.04 2.22 7.67 -2.91 -0.02 2.20 16 18 C 0.01 0.44 4.61 84.86 0.39 0.84 16 19 N -0.94 -56.04 13.97 21.65 0.30 -55.74 16 20 Si 0.94 43.80 23.20 68.60 1.59 45.39 16 21 H -0.27 -12.05 5.66 99.48 0.56 -11.49 16 22 H -0.34 -17.32 7.11 99.48 0.71 -16.61 16 23 H -0.21 -8.79 3.61 99.48 0.36 -8.43 16 24 C 0.11 4.03 4.10 44.99 0.18 4.22 16 25 C -0.23 -9.16 5.92 30.59 0.18 -8.98 16 26 C -0.19 -6.48 10.38 30.59 0.32 -6.16 16 27 H 0.07 2.19 5.53 -2.39 -0.01 2.17 16 28 H 0.07 1.92 8.07 -2.39 -0.02 1.90 16 29 H 0.08 2.06 7.22 -2.38 -0.02 2.04 16 30 H 0.12 4.06 6.78 -2.91 -0.02 4.04 16 31 H 0.16 7.07 3.11 -2.91 -0.01 7.06 16 32 H 0.13 3.91 8.06 -2.91 -0.02 3.89 16 33 H 0.16 2.72 8.06 -2.91 -0.02 2.70 16 34 H 0.16 3.00 7.15 -2.91 -0.02 2.98 16 35 H 0.09 3.36 3.51 -2.39 -0.01 3.35 16 36 H 0.06 2.09 8.12 -2.39 -0.02 2.07 16 37 H 0.26 15.05 8.31 -92.71 -0.77 14.28 16 38 H 0.12 3.79 6.49 -2.39 -0.02 3.77 16 39 H 0.08 3.76 4.75 -2.39 -0.01 3.75 16 40 H 0.10 3.43 7.53 -2.39 -0.02 3.42 16 41 H 0.11 3.01 8.14 -2.39 -0.02 2.99 16 42 H 0.07 2.76 8.14 -2.39 -0.02 2.74 16 Total: -1.00 -60.63 331.00 6.79 -53.85 By element: Atomic # 1 Polarization: 28.24 SS G_CDS: 0.58 Total: 28.82 kcal Atomic # 6 Polarization: -37.30 SS G_CDS: 3.66 Total: -33.63 kcal Atomic # 7 Polarization: -80.26 SS G_CDS: -1.22 Total: -81.47 kcal Atomic # 9 Polarization: -15.12 SS G_CDS: 2.17 Total: -12.95 kcal Atomic # 14 Polarization: 43.80 SS G_CDS: 1.59 Total: 45.39 kcal Total: -60.63 6.79 -53.85 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000503953346.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.015 kcal (2) G-P(sol) polarization free energy of solvation -60.634 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.618 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.787 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.847 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.832 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds