Wall clock time and date at job start Tue Mar 31 2020 14:00:06
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31513 * 1
3 3 Si 1.86798 * 119.99980 * 2 1
4 4 H 1.48497 * 109.47533 * 270.00298 * 3 2 1
5 5 H 1.48506 * 109.47121 * 30.00440 * 3 2 1
6 6 H 1.48504 * 109.47291 * 149.99787 * 3 2 1
7 7 C 1.37880 * 120.00363 * 180.02562 * 2 1 3
8 8 H 1.07997 * 120.00322 * 180.02562 * 7 2 1
9 9 C 1.50699 * 119.99954 * 359.97438 * 7 2 1
10 10 H 1.09010 * 109.50345 * 299.92470 * 9 7 2
11 11 C 1.53114 * 109.50338 * 59.99904 * 9 7 2
12 12 C 1.53126 * 109.16071 * 177.59859 * 11 9 7
13 13 C 1.53034 * 109.27454 * 302.34640 * 12 11 9
14 14 N 1.46847 * 109.52486 * 59.18079 * 13 12 11
15 15 C 1.46906 * 110.99812 * 174.15668 * 14 13 12
16 16 C 1.52998 * 109.47284 * 294.21077 * 15 14 13
17 17 C 1.52996 * 109.46993 * 180.02562 * 16 15 14
18 18 C 1.50702 * 109.47165 * 179.97438 * 17 16 15
19 19 C 1.38454 * 120.02288 * 269.72942 * 18 17 16
20 20 F 1.35100 * 120.01866 * 359.97438 * 19 18 17
21 21 C 1.38448 * 119.96221 * 179.74318 * 19 18 17
22 22 C 1.38224 * 119.99921 * 0.52626 * 21 19 18
23 23 C 1.38208 * 120.04087 * 359.72964 * 22 21 19
24 24 C 1.38291 * 120.01373 * 90.00188 * 18 17 16
25 25 Cl 1.73596 * 120.00546 * 359.97438 * 24 18 17
26 26 C 1.46848 * 111.19788 * 298.25416 * 14 13 12
27 27 H 0.96990 * 120.00382 * 359.97438 * 1 2 3
28 28 H 1.09001 * 109.52084 * 57.69297 * 11 9 7
29 29 H 1.09000 * 109.57760 * 297.53067 * 11 9 7
30 30 H 1.08997 * 109.50129 * 62.28942 * 12 11 9
31 31 H 1.09006 * 109.50177 * 182.40700 * 12 11 9
32 32 H 1.08999 * 109.45899 * 179.20018 * 13 12 11
33 33 H 1.09006 * 109.46754 * 299.15875 * 13 12 11
34 34 H 1.09001 * 109.47066 * 54.21514 * 15 14 13
35 35 H 1.08998 * 109.46581 * 174.21006 * 15 14 13
36 36 H 1.09000 * 109.46907 * 300.00211 * 16 15 14
37 37 H 1.08998 * 109.46856 * 59.99844 * 16 15 14
38 38 H 1.09000 * 109.47405 * 299.99831 * 17 16 15
39 39 H 1.09010 * 109.47106 * 60.00119 * 17 16 15
40 40 H 1.08000 * 119.99856 * 180.25629 * 21 19 18
41 41 H 1.07997 * 119.98317 * 179.69954 * 22 21 19
42 42 H 1.07994 * 119.98440 * 179.97438 * 23 22 21
43 43 H 1.09000 * 109.46321 * 301.72950 * 26 14 13
44 44 H 1.08999 * 109.45108 * 181.74821 * 26 14 13
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3151 0.0000 0.0000
3 14 2.2491 1.6177 0.0000
4 1 2.4966 2.0465 -1.4000
5 1 1.4466 2.6527 0.7002
6 1 3.5467 1.4402 0.7001
7 6 2.0046 -1.1940 -0.0005
8 1 3.0846 -1.1940 -0.0001
9 6 1.2512 -2.4992 -0.0005
10 1 0.6256 -2.5583 0.8903
11 6 0.3701 -2.5808 -1.2501
12 6 -0.3456 -3.9343 -1.2729
13 6 0.6946 -5.0564 -1.2416
14 7 1.5113 -4.9347 -0.0273
15 6 2.4289 -6.0742 0.1064
16 6 1.6224 -7.3549 0.3303
17 6 2.5781 -8.5415 0.4700
18 6 1.7838 -9.8029 0.6912
19 6 1.4709 -10.2080 1.9777
20 9 1.8780 -9.4729 3.0355
21 6 0.7366 -11.3642 2.1792
22 6 0.3255 -12.1193 1.0969
23 6 0.6423 -11.7179 -0.1871
24 6 1.3718 -10.5596 -0.3905
25 17 1.7689 -10.0561 -2.0037
26 6 2.2450 -3.6629 -0.0060
27 1 -0.4850 0.8399 0.0004
28 1 0.9909 -2.4820 -2.1406
29 1 -0.3679 -1.7789 -1.2297
30 1 -0.9961 -4.0166 -0.4022
31 1 -0.9414 -4.0157 -2.1821
32 1 0.1879 -6.0214 -1.2433
33 1 1.3360 -4.9817 -2.1197
34 1 3.0214 -6.1722 -0.8033
35 1 3.0918 -5.9091 0.9557
36 1 1.0300 -7.2568 1.2399
37 1 0.9594 -7.5199 -0.5190
38 1 3.1709 -8.6397 -0.4394
39 1 3.2408 -8.3761 1.3197
40 1 0.4887 -11.6785 3.1823
41 1 -0.2431 -13.0238 1.2546
42 1 0.3210 -12.3087 -1.0321
43 1 2.8792 -3.5946 -0.8900
44 1 2.8642 -3.6159 0.8898
RHF calculation, no. of doubly occupied orbitals= 58
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000597177604.mol2 44
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 14:00:06
Heat of formation + Delta-G solvation = -45.969193 kcal
Electronic energy + Delta-G solvation = -24950.994536 eV
Core-core repulsion = 21228.418199 eV
Total energy + Delta-G solvation = -3722.576337 eV
No. of doubly occupied orbitals = 58
Molecular weight
(most abundant/longest-lived isotopes) = 325.130 amu
Computer time = 0.57 seconds
Orbital eigenvalues (eV)
-49.18322 -39.67505 -38.27527 -36.76353 -35.24694 -33.37480 -31.79530 -30.78923
-30.08876 -29.46916 -25.89349 -24.92053 -23.23996 -23.03851 -21.67140 -21.51343
-20.32162 -18.54372 -18.05705 -17.14841 -16.45820 -16.12838 -15.91996 -15.14037
-15.03837 -14.90758 -14.52738 -14.14043 -13.88855 -13.72537 -13.53851 -13.26068
-13.02603 -12.57315 -12.42508 -12.33060 -11.98588 -11.79808 -11.74588 -11.59420
-11.39693 -11.28197 -10.93673 -10.88561 -10.70290 -10.60133 -10.40274 -9.99046
-9.79020 -9.41908 -9.15515 -9.06683 -8.92388 -8.65545 -8.26212 -7.59157
-5.93574 -3.99648 0.61014 0.69360 1.73213 3.03879 3.33064 3.39751
3.42919 3.89415 4.20594 4.39772 4.40757 4.47688 4.62706 4.80876
5.01304 5.06499 5.30575 5.36249 5.38774 5.45965 5.56627 5.66224
5.75120 5.78481 5.79542 5.80441 5.91859 5.94966 6.14523 6.25375
6.32224 6.35915 6.43616 6.48618 6.57344 6.77771 6.81111 7.02802
7.27554 7.45904 7.73784 7.79890 7.89707 8.13755 8.22400 8.52880
9.04540 9.64361 11.12384
Molecular weight = 325.13amu
Principal moments of inertia in cm(-1)
A = 0.022477 B = 0.002511 C = 0.002403
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1245.420156 B =11148.068443 C =11648.456487
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.889 5.889
2 C 0.062 3.938
3 Si 0.890 3.110
4 H -0.282 1.282
5 H -0.287 1.287
6 H -0.275 1.275
7 C -0.514 4.514
8 H 0.053 0.947
9 C 0.055 3.945
10 H 0.034 0.966
11 C -0.110 4.110
12 C -0.118 4.118
13 C 0.062 3.938
14 N -0.538 5.538
15 C 0.058 3.942
16 C -0.107 4.107
17 C -0.086 4.086
18 C -0.101 4.101
19 C 0.115 3.885
20 F -0.127 7.127
21 C -0.148 4.148
22 C -0.087 4.087
23 C -0.120 4.120
24 C -0.010 4.010
25 Cl -0.052 7.052
26 C 0.068 3.932
27 H 0.259 0.741
28 H 0.029 0.971
29 H 0.090 0.910
30 H 0.060 0.940
31 H 0.045 0.955
32 H 0.059 0.941
33 H 0.021 0.979
34 H 0.026 0.974
35 H 0.070 0.930
36 H 0.071 0.929
37 H 0.066 0.934
38 H 0.083 0.917
39 H 0.081 0.919
40 H 0.141 0.859
41 H 0.141 0.859
42 H 0.139 0.861
43 H 0.018 0.982
44 H 0.058 0.942
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 1.144 -26.281 -0.049 26.306
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.527 5.527
2 C -0.139 4.139
3 Si 0.718 3.282
4 H -0.208 1.208
5 H -0.213 1.213
6 H -0.200 1.200
7 C -0.553 4.553
8 H 0.071 0.929
9 C 0.036 3.964
10 H 0.052 0.948
11 C -0.148 4.148
12 C -0.155 4.155
13 C -0.066 4.066
14 N -0.263 5.263
15 C -0.071 4.071
16 C -0.145 4.145
17 C -0.124 4.124
18 C -0.102 4.102
19 C 0.095 3.905
20 F -0.106 7.106
21 C -0.167 4.167
22 C -0.105 4.105
23 C -0.139 4.139
24 C -0.037 4.037
25 Cl -0.022 7.022
26 C -0.058 4.058
27 H 0.069 0.931
28 H 0.047 0.953
29 H 0.108 0.892
30 H 0.079 0.921
31 H 0.063 0.937
32 H 0.077 0.923
33 H 0.039 0.961
34 H 0.044 0.956
35 H 0.088 0.912
36 H 0.090 0.910
37 H 0.084 0.916
38 H 0.101 0.899
39 H 0.099 0.901
40 H 0.159 0.841
41 H 0.159 0.841
42 H 0.157 0.843
43 H 0.036 0.964
44 H 0.077 0.923
Dipole moment (debyes) X Y Z Total
from point charges 0.736 -26.064 0.251 26.076
hybrid contribution 1.107 1.044 -0.688 1.670
sum 1.844 -25.020 -0.437 25.092
Atomic orbital electron populations
1.69890 1.05829 1.26265 1.50766 1.24935 0.94822 0.98919 0.95195
0.86636 0.79901 0.83692 0.77988 1.20818 1.21258 1.19983 1.21159
0.92811 0.90722 1.50565 0.92888 1.18660 0.92622 0.90279 0.94840
0.94793 1.21650 1.00013 0.94729 0.98441 1.21678 0.97222 0.96553
1.00089 1.22062 0.95683 0.98699 0.90177 1.61979 1.24086 1.02246
1.37973 1.22022 0.94386 0.90675 0.99994 1.21537 0.97781 0.92191
1.02942 1.20660 0.97583 0.90423 1.03756 1.19818 1.01277 0.98496
0.90655 1.17350 0.98634 0.91457 0.83051 1.91544 1.88378 1.76106
1.54540 1.21270 0.99750 0.94576 1.01145 1.20933 0.98892 0.99655
0.91012 1.21120 0.98804 0.95610 0.98357 1.20594 1.00806 0.96082
0.86212 1.98396 1.92525 1.90940 1.20372 1.22299 0.96390 0.88519
0.98639 0.93094 0.95259 0.89151 0.92146 0.93664 0.92285 0.96092
0.95621 0.91176 0.91013 0.91567 0.89872 0.90086 0.84110 0.84112
0.84312 0.96421 0.92348
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.89 -25.70 11.35 55.43 0.63 -25.07 16
2 C 0.06 1.75 5.30 -17.82 -0.09 1.66 16
3 Si 0.89 21.52 29.54 -169.99 -5.02 16.50 16
4 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16
5 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16
6 H -0.27 -6.57 7.11 56.52 0.40 -6.16 16
7 C -0.51 -14.32 8.56 -34.44 -0.29 -14.61 16
8 H 0.05 1.46 7.74 -52.49 -0.41 1.05 16
9 C 0.05 1.40 2.26 -91.70 -0.21 1.19 16
10 H 0.03 0.96 8.14 -51.92 -0.42 0.54 16
11 C -0.11 -2.67 5.02 -26.61 -0.13 -2.81 16
12 C -0.12 -2.38 6.09 -26.65 -0.16 -2.54 16
13 C 0.06 1.13 5.29 -3.84 -0.02 1.11 16
14 N -0.54 -10.25 4.66 -234.67 -1.09 -11.35 16
15 C 0.06 0.89 4.96 -3.82 -0.02 0.87 16
16 C -0.11 -1.41 5.13 -26.73 -0.14 -1.55 16
17 C -0.09 -0.96 4.77 -27.88 -0.13 -1.10 16
18 C -0.10 -1.07 5.14 -104.52 -0.54 -1.60 16
19 C 0.11 1.18 7.24 -39.42 -0.29 0.89 16
20 F -0.13 -1.48 16.47 2.25 0.04 -1.45 16
21 C -0.15 -1.16 10.03 -39.51 -0.40 -1.56 16
22 C -0.09 -0.56 10.04 -39.60 -0.40 -0.96 16
23 C -0.12 -0.90 9.83 -39.54 -0.39 -1.29 16
24 C -0.01 -0.10 6.31 -39.51 -0.25 -0.35 16
25 Cl -0.05 -0.51 27.30 -51.86 -1.42 -1.92 16
26 C 0.07 1.50 4.68 -3.83 -0.02 1.48 16
27 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16
28 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16
29 H 0.09 2.44 6.15 -51.93 -0.32 2.12 16
30 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16
31 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16
32 H 0.06 0.96 6.21 -51.93 -0.32 0.64 16
33 H 0.02 0.39 8.14 -51.93 -0.42 -0.04 16
34 H 0.03 0.39 8.12 -51.93 -0.42 -0.03 16
35 H 0.07 1.06 7.99 -51.93 -0.41 0.64 16
36 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16
37 H 0.07 0.89 6.43 -51.93 -0.33 0.56 16
38 H 0.08 0.89 6.91 -51.93 -0.36 0.53 16
39 H 0.08 0.88 7.63 -51.92 -0.40 0.49 16
40 H 0.14 0.82 8.06 -52.49 -0.42 0.39 16
41 H 0.14 0.50 8.06 -52.49 -0.42 0.07 16
42 H 0.14 0.77 8.06 -52.49 -0.42 0.34 16
43 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16
44 H 0.06 1.26 8.01 -51.93 -0.42 0.85 16
LS Contribution 365.99 15.07 5.52 5.52
Total: -1.00 -29.32 365.99 -11.58 -40.89
By element:
Atomic # 1 Polarization: 4.80 SS G_CDS: -6.75 Total: -1.96 kcal
Atomic # 6 Polarization: -17.69 SS G_CDS: -3.48 Total: -21.16 kcal
Atomic # 7 Polarization: -35.95 SS G_CDS: -0.46 Total: -36.42 kcal
Atomic # 9 Polarization: -1.48 SS G_CDS: 0.04 Total: -1.45 kcal
Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.50 kcal
Atomic # 17 Polarization: -0.51 SS G_CDS: -1.42 Total: -1.92 kcal
Total LS contribution 5.52 Total: 5.52 kcal
Total: -29.32 -11.58 -40.89 kcal
The number of atoms in the molecule is 44
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000597177604.mol2 44
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -5.078 kcal
(2) G-P(sol) polarization free energy of solvation -29.315 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.394 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.576 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.891 kcal
(6) G-S(sol) free energy of system = (1) + (5) -45.969 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.57 seconds