Wall clock time and date at job start Tue Mar 31 2020 14:00:06
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31513 * 1
3 3 Si 1.86798 * 119.99980 * 2 1
4 4 H 1.48497 * 109.47533 * 270.00298 * 3 2 1
5 5 H 1.48506 * 109.47121 * 30.00440 * 3 2 1
6 6 H 1.48504 * 109.47291 * 149.99787 * 3 2 1
7 7 C 1.37880 * 120.00363 * 180.02562 * 2 1 3
8 8 H 1.07997 * 120.00322 * 180.02562 * 7 2 1
9 9 C 1.50699 * 119.99954 * 359.97438 * 7 2 1
10 10 H 1.09010 * 109.50345 * 299.92470 * 9 7 2
11 11 C 1.53114 * 109.50338 * 59.99904 * 9 7 2
12 12 C 1.53126 * 109.16071 * 177.59859 * 11 9 7
13 13 C 1.53034 * 109.27454 * 302.34640 * 12 11 9
14 14 N 1.46847 * 109.52486 * 59.18079 * 13 12 11
15 15 C 1.46906 * 110.99812 * 174.15668 * 14 13 12
16 16 C 1.52998 * 109.47284 * 294.21077 * 15 14 13
17 17 C 1.52996 * 109.46993 * 180.02562 * 16 15 14
18 18 C 1.50702 * 109.47165 * 179.97438 * 17 16 15
19 19 C 1.38454 * 120.02288 * 269.72942 * 18 17 16
20 20 F 1.35100 * 120.01866 * 359.97438 * 19 18 17
21 21 C 1.38448 * 119.96221 * 179.74318 * 19 18 17
22 22 C 1.38224 * 119.99921 * 0.52626 * 21 19 18
23 23 C 1.38208 * 120.04087 * 359.72964 * 22 21 19
24 24 C 1.38291 * 120.01373 * 90.00188 * 18 17 16
25 25 Cl 1.73596 * 120.00546 * 359.97438 * 24 18 17
26 26 C 1.46848 * 111.19788 * 298.25416 * 14 13 12
27 27 H 0.96990 * 120.00382 * 359.97438 * 1 2 3
28 28 H 1.09001 * 109.52084 * 57.69297 * 11 9 7
29 29 H 1.09000 * 109.57760 * 297.53067 * 11 9 7
30 30 H 1.08997 * 109.50129 * 62.28942 * 12 11 9
31 31 H 1.09006 * 109.50177 * 182.40700 * 12 11 9
32 32 H 1.08999 * 109.45899 * 179.20018 * 13 12 11
33 33 H 1.09006 * 109.46754 * 299.15875 * 13 12 11
34 34 H 1.09001 * 109.47066 * 54.21514 * 15 14 13
35 35 H 1.08998 * 109.46581 * 174.21006 * 15 14 13
36 36 H 1.09000 * 109.46907 * 300.00211 * 16 15 14
37 37 H 1.08998 * 109.46856 * 59.99844 * 16 15 14
38 38 H 1.09000 * 109.47405 * 299.99831 * 17 16 15
39 39 H 1.09010 * 109.47106 * 60.00119 * 17 16 15
40 40 H 1.08000 * 119.99856 * 180.25629 * 21 19 18
41 41 H 1.07997 * 119.98317 * 179.69954 * 22 21 19
42 42 H 1.07994 * 119.98440 * 179.97438 * 23 22 21
43 43 H 1.09000 * 109.46321 * 301.72950 * 26 14 13
44 44 H 1.08999 * 109.45108 * 181.74821 * 26 14 13
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3151 0.0000 0.0000
3 14 2.2491 1.6177 0.0000
4 1 2.4966 2.0465 -1.4000
5 1 1.4466 2.6527 0.7002
6 1 3.5467 1.4402 0.7001
7 6 2.0046 -1.1940 -0.0005
8 1 3.0846 -1.1940 -0.0001
9 6 1.2512 -2.4992 -0.0005
10 1 0.6256 -2.5583 0.8903
11 6 0.3701 -2.5808 -1.2501
12 6 -0.3456 -3.9343 -1.2729
13 6 0.6946 -5.0564 -1.2416
14 7 1.5113 -4.9347 -0.0273
15 6 2.4289 -6.0742 0.1064
16 6 1.6224 -7.3549 0.3303
17 6 2.5781 -8.5415 0.4700
18 6 1.7838 -9.8029 0.6912
19 6 1.4709 -10.2080 1.9777
20 9 1.8780 -9.4729 3.0355
21 6 0.7366 -11.3642 2.1792
22 6 0.3255 -12.1193 1.0969
23 6 0.6423 -11.7179 -0.1871
24 6 1.3718 -10.5596 -0.3905
25 17 1.7689 -10.0561 -2.0037
26 6 2.2450 -3.6629 -0.0060
27 1 -0.4850 0.8399 0.0004
28 1 0.9909 -2.4820 -2.1406
29 1 -0.3679 -1.7789 -1.2297
30 1 -0.9961 -4.0166 -0.4022
31 1 -0.9414 -4.0157 -2.1821
32 1 0.1879 -6.0214 -1.2433
33 1 1.3360 -4.9817 -2.1197
34 1 3.0214 -6.1722 -0.8033
35 1 3.0918 -5.9091 0.9557
36 1 1.0300 -7.2568 1.2399
37 1 0.9594 -7.5199 -0.5190
38 1 3.1709 -8.6397 -0.4394
39 1 3.2408 -8.3761 1.3197
40 1 0.4887 -11.6785 3.1823
41 1 -0.2431 -13.0238 1.2546
42 1 0.3210 -12.3087 -1.0321
43 1 2.8792 -3.5946 -0.8900
44 1 2.8642 -3.6159 0.8898
RHF calculation, no. of doubly occupied orbitals= 58
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000597177604.mol2 44
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 14:00:06
Heat of formation + Delta-G solvation = -59.990353 kcal
Electronic energy + Delta-G solvation = -24951.602539 eV
Core-core repulsion = 21228.418199 eV
Total energy + Delta-G solvation = -3723.184341 eV
No. of doubly occupied orbitals = 58
Molecular weight
(most abundant/longest-lived isotopes) = 325.130 amu
Computer time = 0.65 seconds
Orbital eigenvalues (eV)
-49.96870 -40.38562 -39.82965 -37.45205 -36.55096 -34.97698 -33.38504 -31.76607
-31.41216 -30.75154 -27.06935 -26.87537 -24.40226 -23.83291 -23.39596 -22.49443
-21.63588 -20.36736 -18.75113 -18.41841 -17.87307 -17.06289 -16.73759 -16.64900
-16.25091 -16.15506 -15.73980 -15.46794 -15.04191 -14.82622 -14.60167 -14.48588
-14.38699 -14.19445 -13.95058 -13.42784 -13.14756 -13.10447 -12.84858 -12.74726
-12.57774 -12.50800 -12.44884 -12.35175 -12.24374 -11.88162 -11.76667 -11.67928
-11.48755 -11.37225 -10.82384 -10.66835 -10.37433 -9.79889 -9.71430 -9.13373
-8.08134 -6.22574 -0.01878 0.04926 1.04968 1.40705 1.41114 1.51652
2.41173 2.43209 3.06183 3.18487 3.24256 3.54016 3.71943 3.91422
4.02333 4.15649 4.18278 4.24698 4.28933 4.36561 4.46460 4.52109
4.57332 4.60177 4.68944 4.73919 4.81341 4.88979 4.95466 4.97666
5.00379 5.09331 5.12254 5.17794 5.22888 5.26553 5.31626 5.39545
5.51991 5.63169 5.73983 5.96407 6.12287 6.21012 6.37240 6.45900
6.90007 7.45185 8.96595
Molecular weight = 325.13amu
Principal moments of inertia in cm(-1)
A = 0.022477 B = 0.002511 C = 0.002403
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1245.420156 B =11148.068443 C =11648.456487
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.916 5.916
2 C 0.013 3.987
3 Si 0.955 3.045
4 H -0.275 1.275
5 H -0.283 1.283
6 H -0.269 1.269
7 C -0.537 4.537
8 H 0.051 0.949
9 C 0.053 3.947
10 H -0.005 1.005
11 C -0.103 4.103
12 C -0.111 4.111
13 C 0.067 3.933
14 N -0.550 5.550
15 C 0.059 3.941
16 C -0.093 4.093
17 C -0.079 4.079
18 C -0.119 4.119
19 C 0.090 3.910
20 F -0.143 7.143
21 C -0.147 4.147
22 C -0.075 4.075
23 C -0.118 4.118
24 C -0.022 4.022
25 Cl -0.059 7.059
26 C 0.082 3.918
27 H 0.260 0.740
28 H 0.022 0.978
29 H 0.058 0.942
30 H 0.049 0.951
31 H 0.069 0.931
32 H 0.086 0.914
33 H 0.024 0.976
34 H 0.034 0.966
35 H 0.071 0.929
36 H 0.057 0.943
37 H 0.066 0.934
38 H 0.087 0.913
39 H 0.078 0.922
40 H 0.161 0.839
41 H 0.178 0.822
42 H 0.161 0.839
43 H 0.015 0.985
44 H 0.055 0.945
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 1.154 -28.568 -0.545 28.597
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.555 5.555
2 C -0.186 4.186
3 Si 0.781 3.219
4 H -0.201 1.201
5 H -0.208 1.208
6 H -0.193 1.193
7 C -0.575 4.575
8 H 0.069 0.931
9 C 0.034 3.966
10 H 0.014 0.986
11 C -0.142 4.142
12 C -0.149 4.149
13 C -0.061 4.061
14 N -0.274 5.274
15 C -0.069 4.069
16 C -0.131 4.131
17 C -0.117 4.117
18 C -0.120 4.120
19 C 0.071 3.929
20 F -0.121 7.121
21 C -0.166 4.166
22 C -0.093 4.093
23 C -0.136 4.136
24 C -0.049 4.049
25 Cl -0.030 7.030
26 C -0.045 4.045
27 H 0.070 0.930
28 H 0.041 0.959
29 H 0.077 0.923
30 H 0.068 0.932
31 H 0.088 0.912
32 H 0.105 0.895
33 H 0.043 0.957
34 H 0.053 0.947
35 H 0.089 0.911
36 H 0.076 0.924
37 H 0.085 0.915
38 H 0.106 0.894
39 H 0.096 0.904
40 H 0.178 0.822
41 H 0.195 0.805
42 H 0.179 0.821
43 H 0.033 0.967
44 H 0.074 0.926
Dipole moment (debyes) X Y Z Total
from point charges 0.755 -28.370 -0.246 28.382
hybrid contribution 1.056 1.678 -0.507 2.046
sum 1.810 -26.692 -0.753 26.764
Atomic orbital electron populations
1.70034 1.07190 1.27088 1.51198 1.25736 0.95685 1.02368 0.94763
0.85605 0.78733 0.79372 0.78229 1.20094 1.20817 1.19312 1.21524
0.92971 0.92195 1.50846 0.93083 1.18582 0.92978 0.91317 0.93722
0.98636 1.21460 0.99102 0.96262 0.97337 1.21595 0.97551 0.94910
1.00834 1.22045 0.95151 0.99012 0.89893 1.61922 1.24779 1.02086
1.38655 1.22091 0.94221 0.90125 1.00448 1.21378 0.97707 0.91894
1.02137 1.20522 0.97193 0.90152 1.03848 1.19773 1.02319 0.98643
0.91305 1.17673 1.00046 0.92579 0.82648 1.91500 1.88781 1.76701
1.55154 1.21598 0.98630 0.93563 1.02774 1.21378 0.97746 1.00184
0.89955 1.21480 0.97617 0.94801 0.99719 1.20749 1.01622 0.96918
0.85578 1.98390 1.92679 1.91137 1.20788 1.21972 0.95321 0.88920
0.98336 0.93042 0.95948 0.92319 0.93197 0.91231 0.89547 0.95750
0.94740 0.91073 0.92399 0.91526 0.89437 0.90362 0.82155 0.80458
0.82118 0.96708 0.92629
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.92 -54.38 11.35 21.45 0.24 -54.14 16
2 C 0.01 0.75 5.30 84.66 0.45 1.20 16
3 Si 0.96 44.63 29.54 68.60 2.03 46.65 16
4 H -0.28 -12.50 7.11 99.48 0.71 -11.80 16
5 H -0.28 -12.93 7.11 99.48 0.71 -12.23 16
6 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16
7 C -0.54 -30.67 8.56 25.60 0.22 -30.45 16
8 H 0.05 2.86 7.74 -2.91 -0.02 2.83 16
9 C 0.05 2.79 2.26 -11.49 -0.03 2.77 16
10 H 0.00 -0.27 8.14 -2.38 -0.02 -0.29 16
11 C -0.10 -5.14 5.02 30.67 0.15 -4.99 16
12 C -0.11 -4.46 6.09 30.65 0.19 -4.27 16
13 C 0.07 2.35 5.29 86.32 0.46 2.80 16
14 N -0.55 -20.77 4.66 -896.35 -4.17 -24.95 16
15 C 0.06 1.77 4.96 86.30 0.43 2.20 16
16 C -0.09 -2.39 5.13 30.59 0.16 -2.24 16
17 C -0.08 -1.72 4.77 29.85 0.14 -1.57 16
18 C -0.12 -2.39 5.14 -19.80 -0.10 -2.49 16
19 C 0.09 1.76 7.24 22.37 0.16 1.92 16
20 F -0.14 -3.32 16.47 44.97 0.74 -2.58 16
21 C -0.15 -1.94 10.03 22.32 0.22 -1.72 16
22 C -0.07 -0.70 10.04 22.26 0.22 -0.47 16
23 C -0.12 -1.41 9.83 22.30 0.22 -1.19 16
24 C -0.02 -0.38 6.31 22.32 0.14 -0.24 16
25 Cl -0.06 -1.06 27.30 -2.72 -0.07 -1.14 16
26 C 0.08 3.64 4.68 86.32 0.40 4.05 16
27 H 0.26 14.67 8.31 -92.72 -0.77 13.90 16
28 H 0.02 1.10 8.14 -2.39 -0.02 1.08 16
29 H 0.06 3.28 6.15 -2.39 -0.01 3.26 16
30 H 0.05 2.09 8.14 -2.39 -0.02 2.07 16
31 H 0.07 2.43 8.14 -2.38 -0.02 2.42 16
32 H 0.09 2.61 6.21 -2.39 -0.01 2.60 16
33 H 0.02 0.85 8.14 -2.38 -0.02 0.83 16
34 H 0.03 0.99 8.12 -2.39 -0.02 0.97 16
35 H 0.07 2.12 7.99 -2.39 -0.02 2.10 16
36 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16
37 H 0.07 1.69 6.43 -2.39 -0.02 1.68 16
38 H 0.09 1.78 6.91 -2.39 -0.02 1.77 16
39 H 0.08 1.70 7.63 -2.38 -0.02 1.68 16
40 H 0.16 1.41 8.06 -2.91 -0.02 1.39 16
41 H 0.18 0.36 8.06 -2.91 -0.02 0.33 16
42 H 0.16 1.18 8.06 -2.91 -0.02 1.16 16
43 H 0.01 0.66 8.14 -2.39 -0.02 0.64 16
44 H 0.06 2.45 8.01 -2.39 -0.02 2.43 16
Total: -1.00 -65.05 365.99 3.19 -61.86
By element:
Atomic # 1 Polarization: 8.00 SS G_CDS: 0.98 Total: 8.98 kcal
Atomic # 6 Polarization: -38.13 SS G_CDS: 3.44 Total: -34.69 kcal
Atomic # 7 Polarization: -75.16 SS G_CDS: -3.93 Total: -79.09 kcal
Atomic # 9 Polarization: -3.32 SS G_CDS: 0.74 Total: -2.58 kcal
Atomic # 14 Polarization: 44.63 SS G_CDS: 2.03 Total: 46.65 kcal
Atomic # 17 Polarization: -1.06 SS G_CDS: -0.07 Total: -1.14 kcal
Total: -65.05 3.19 -61.86 kcal
The number of atoms in the molecule is 44
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000597177604.mol2 44
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 1.870 kcal
(2) G-P(sol) polarization free energy of solvation -65.046 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.175 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.185 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.861 kcal
(6) G-S(sol) free energy of system = (1) + (5) -59.990 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.65 seconds