Wall clock time and date at job start Tue Mar 31 2020 14:05:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31506 * 1 3 3 Si 1.86804 * 120.00458 * 2 1 4 4 H 1.48499 * 109.47015 * 270.00291 * 3 2 1 5 5 H 1.48502 * 109.46777 * 29.99871 * 3 2 1 6 6 H 1.48496 * 109.47224 * 149.99977 * 3 2 1 7 7 C 1.37888 * 119.99902 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99894 * 179.97438 * 7 2 1 9 9 C 1.50697 * 119.99694 * 359.97438 * 7 2 1 10 10 N 1.46898 * 109.46928 * 179.97438 * 9 7 2 11 11 C 1.46899 * 110.99942 * 170.00344 * 10 9 7 12 12 C 1.53244 * 109.33871 * 187.25352 * 11 10 9 13 13 N 1.47079 * 108.52310 * 306.16971 * 12 11 10 14 14 C 1.34777 * 120.87890 * 231.18939 * 13 12 11 15 15 O 1.21553 * 120.00263 * 5.99662 * 14 13 12 16 16 C 1.47839 * 119.99852 * 186.00150 * 14 13 12 17 17 C 1.40022 * 120.55854 * 213.14568 * 16 14 13 18 18 C 1.38359 * 118.28830 * 180.02562 * 17 16 14 19 19 C 1.38353 * 119.30407 * 359.97438 * 18 17 16 20 20 C 1.50704 * 119.45998 * 179.97438 * 19 18 17 21 21 F 1.39896 * 109.47012 * 300.00088 * 20 19 18 22 22 F 1.39901 * 109.46698 * 60.00267 * 20 19 18 23 23 N 1.31928 * 121.07861 * 0.25864 * 19 18 17 24 24 C 1.31696 * 121.87603 * 359.46705 * 23 19 18 25 25 C 1.47078 * 118.23623 * 51.45336 * 13 12 11 26 26 C 1.46905 * 110.99973 * 294.30259 * 10 9 7 27 27 H 0.97005 * 120.00051 * 359.97438 * 1 2 3 28 28 H 1.09005 * 109.47088 * 60.00127 * 9 7 2 29 29 H 1.08998 * 109.47793 * 300.00188 * 9 7 2 30 30 H 1.09000 * 109.49681 * 67.29567 * 11 10 9 31 31 H 1.09000 * 109.49478 * 307.20860 * 11 10 9 32 32 H 1.09001 * 109.62998 * 186.45860 * 12 11 10 33 33 H 1.09003 * 109.62626 * 65.88034 * 12 11 10 34 34 H 1.07994 * 120.85824 * 0.04334 * 17 16 14 35 35 H 1.08004 * 120.34743 * 180.02562 * 18 17 16 36 36 H 1.09002 * 109.46803 * 180.02562 * 20 19 18 37 37 H 1.08002 * 119.70893 * 180.26698 * 24 23 19 38 38 H 1.09002 * 109.62883 * 68.25800 * 25 13 12 39 39 H 1.08997 * 109.62842 * 188.83026 * 25 13 12 40 40 H 1.09000 * 109.49116 * 292.70177 * 26 10 9 41 41 H 1.08995 * 109.49384 * 52.79012 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1942 -0.0005 8 1 3.0844 -1.1942 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 7 2.2055 -3.6158 -0.0018 11 6 1.5211 -4.8936 0.2362 12 6 2.5638 -6.0035 0.4078 13 7 3.4608 -5.9860 -0.7577 14 6 3.7105 -7.1118 -1.4553 15 8 3.1096 -8.1353 -1.1929 16 6 4.7154 -7.1020 -2.5397 17 6 4.5500 -7.9105 -3.6709 18 6 5.5195 -7.8647 -4.6569 19 6 6.6105 -7.0293 -4.4956 20 6 7.6689 -6.9770 -5.5672 21 9 8.2292 -8.2483 -5.7315 22 9 7.0920 -6.5623 -6.7724 23 7 6.7422 -6.2817 -3.4166 24 6 5.8441 -6.2865 -2.4533 25 6 4.0827 -4.7086 -1.1381 26 6 2.9756 -3.6486 -1.2523 27 1 -0.4850 0.8401 0.0004 28 1 0.6239 -2.5567 -0.8903 29 1 0.6245 -2.5572 0.8896 30 1 0.8789 -5.1261 -0.6132 31 1 0.9167 -4.8197 1.1403 32 1 2.0633 -6.9697 0.4701 33 1 3.1401 -5.8272 1.3160 34 1 3.6879 -8.5530 -3.7712 35 1 5.4252 -8.4741 -5.5436 36 1 8.4473 -6.2722 -5.2750 37 1 5.9851 -5.6572 -1.5870 38 1 4.8022 -4.4102 -0.3756 39 1 4.5868 -4.8184 -2.0982 40 1 2.3131 -3.8984 -2.0810 41 1 3.4260 -2.6717 -1.4279 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602197904.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:05:39 Heat of formation + Delta-G solvation = -73.875297 kcal Electronic energy + Delta-G solvation = -27191.132056 eV Core-core repulsion = 22935.468901 eV Total energy + Delta-G solvation = -4255.663155 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.134 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -49.45339 -47.43757 -41.22763 -39.57145 -37.64938 -34.72518 -33.32871 -32.84134 -32.30514 -30.81553 -28.61138 -27.45464 -25.64590 -24.52459 -23.51231 -23.16924 -22.02035 -20.89007 -19.35704 -18.29630 -18.15012 -17.69393 -17.39807 -16.71741 -16.42367 -15.94768 -15.45496 -15.22164 -14.82942 -14.55539 -14.49577 -14.46354 -14.07661 -13.88611 -13.79979 -13.72912 -13.63813 -13.52131 -13.00136 -12.79239 -12.31315 -11.99129 -11.72937 -11.40794 -11.21356 -11.08638 -10.85838 -10.72381 -10.64984 -10.43608 -10.40786 -9.96421 -9.89855 -9.59124 -9.34540 -8.68850 -8.52282 -7.43937 -6.11860 -4.14371 0.05764 0.69062 2.43719 2.74813 2.87378 3.23029 3.25795 3.32875 3.36071 3.71424 3.91434 4.15078 4.23894 4.33599 4.36810 4.56248 4.57261 4.67196 4.76385 5.02524 5.13037 5.21634 5.26335 5.30949 5.43098 5.49212 5.54503 5.60237 5.74045 5.86306 5.93753 6.16986 6.31203 6.34489 6.48767 7.12366 7.18497 7.19165 7.27527 7.66758 7.92200 7.93235 8.03433 8.39085 8.92597 9.50570 10.98899 Molecular weight = 325.13amu Principal moments of inertia in cm(-1) A = 0.014322 B = 0.002947 C = 0.002549 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1954.620837 B = 9499.827034 C =10982.350807 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.056 3.944 3 Si 0.898 3.102 4 H -0.281 1.281 5 H -0.286 1.286 6 H -0.272 1.272 7 C -0.512 4.512 8 H 0.064 0.936 9 C 0.194 3.806 10 N -0.535 5.535 11 C 0.040 3.960 12 C 0.118 3.882 13 N -0.597 5.597 14 C 0.560 3.440 15 O -0.537 6.537 16 C -0.157 4.157 17 C -0.020 4.020 18 C -0.138 4.138 19 C 0.064 3.936 20 C 0.324 3.676 21 F -0.192 7.192 22 F -0.191 7.191 23 N -0.459 5.459 24 C 0.131 3.869 25 C 0.093 3.907 26 C 0.051 3.949 27 H 0.262 0.738 28 H -0.009 1.009 29 H 0.033 0.967 30 H 0.028 0.972 31 H 0.084 0.916 32 H 0.091 0.909 33 H 0.078 0.922 34 H 0.153 0.847 35 H 0.149 0.851 36 H 0.135 0.865 37 H 0.180 0.820 38 H 0.085 0.915 39 H 0.086 0.914 40 H 0.026 0.974 41 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.014 -14.873 -8.271 21.424 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.145 4.145 3 Si 0.726 3.274 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.197 1.197 7 C -0.550 4.550 8 H 0.082 0.918 9 C 0.069 3.931 10 N -0.260 5.260 11 C -0.089 4.089 12 C -0.004 4.004 13 N -0.329 5.329 14 C 0.347 3.653 15 O -0.416 6.416 16 C -0.162 4.162 17 C -0.047 4.047 18 C -0.158 4.158 19 C -0.075 4.075 20 C 0.270 3.730 21 F -0.174 7.174 22 F -0.172 7.172 23 N -0.167 5.167 24 C -0.027 4.027 25 C -0.029 4.029 26 C -0.079 4.079 27 H 0.072 0.928 28 H 0.009 0.991 29 H 0.051 0.949 30 H 0.046 0.954 31 H 0.102 0.898 32 H 0.109 0.891 33 H 0.097 0.903 34 H 0.171 0.829 35 H 0.166 0.834 36 H 0.152 0.848 37 H 0.197 0.803 38 H 0.103 0.897 39 H 0.104 0.896 40 H 0.044 0.956 41 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 13.584 -14.686 -7.686 21.431 hybrid contribution -1.060 0.337 -0.845 1.397 sum 12.524 -14.349 -8.530 20.869 Atomic orbital electron populations 1.69951 1.06128 1.26952 1.50579 1.24999 0.94862 0.99406 0.95270 0.86494 0.79827 0.83015 0.78079 1.20702 1.21227 1.19680 1.21121 0.93458 0.89819 1.50626 0.91758 1.19732 0.89960 0.87093 0.96301 1.62106 1.28214 1.02757 1.32960 1.22416 0.94900 0.90439 1.01182 1.21862 0.91725 0.99902 0.86877 1.48148 1.46566 1.08172 1.30054 1.17986 0.82136 0.83681 0.81498 1.90783 1.50558 1.31957 1.68254 1.21178 0.97986 0.99861 0.97154 1.21717 0.98201 0.94301 0.90462 1.21886 0.93963 0.99324 1.00618 1.21689 0.95650 0.95407 0.94738 1.20119 0.91478 0.82099 0.79342 1.93037 1.85689 1.42862 1.95780 1.93047 1.86458 1.90083 1.47641 1.67307 1.28945 1.19845 1.00614 1.23398 0.88146 0.94233 0.96917 1.22651 0.96956 0.82637 1.00698 1.22416 0.94957 0.98933 0.91552 0.92805 0.99088 0.94925 0.95408 0.89773 0.89091 0.90348 0.82937 0.83373 0.84788 0.80290 0.89685 0.89605 0.95563 0.88170 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.82 13.29 55.43 0.74 -25.08 16 2 C 0.06 1.53 5.46 -17.82 -0.10 1.44 16 3 Si 0.90 20.74 29.54 -169.99 -5.02 15.72 16 4 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 5 H -0.29 -6.63 7.11 56.52 0.40 -6.22 16 6 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 7 C -0.51 -13.52 8.41 -34.44 -0.29 -13.81 16 8 H 0.06 1.65 7.13 -52.49 -0.37 1.28 16 9 C 0.19 4.76 4.72 -4.98 -0.02 4.73 16 10 N -0.54 -10.49 4.62 -235.46 -1.09 -11.58 16 11 C 0.04 0.67 5.62 -3.70 -0.02 0.65 16 12 C 0.12 1.67 6.61 -3.60 -0.02 1.65 16 13 N -0.60 -8.21 3.00 -173.29 -0.52 -8.73 16 14 C 0.56 7.79 7.44 -12.33 -0.09 7.70 16 15 O -0.54 -8.93 16.30 5.32 0.09 -8.84 16 16 C -0.16 -1.81 5.36 -104.82 -0.56 -2.37 16 17 C -0.02 -0.21 9.75 -38.87 -0.38 -0.59 16 18 C -0.14 -1.25 9.60 -39.49 -0.38 -1.63 16 19 C 0.06 0.61 6.28 -82.51 -0.52 0.10 16 20 C 0.32 2.59 5.54 36.01 0.20 2.79 16 21 F -0.19 -1.71 17.25 2.25 0.04 -1.67 16 22 F -0.19 -1.76 17.25 2.25 0.04 -1.72 16 23 N -0.46 -4.82 10.23 -9.13 -0.09 -4.91 16 24 C 0.13 1.37 8.58 -17.13 -0.15 1.22 16 25 C 0.09 1.20 4.91 -3.37 -0.02 1.19 16 26 C 0.05 0.87 5.47 -3.46 -0.02 0.85 16 27 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 28 H -0.01 -0.23 8.12 -51.93 -0.42 -0.65 16 29 H 0.03 0.86 7.97 -51.93 -0.41 0.45 16 30 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.08 1.36 7.99 -51.93 -0.41 0.95 16 32 H 0.09 1.27 7.04 -51.93 -0.37 0.90 16 33 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 34 H 0.15 1.39 8.03 -52.49 -0.42 0.97 16 35 H 0.15 1.02 8.06 -52.48 -0.42 0.60 16 36 H 0.13 0.77 8.10 -51.93 -0.42 0.35 16 37 H 0.18 1.60 5.79 -52.49 -0.30 1.30 16 38 H 0.09 1.01 7.97 -51.93 -0.41 0.59 16 39 H 0.09 0.95 4.54 -51.93 -0.24 0.72 16 40 H 0.03 0.47 8.14 -51.93 -0.42 0.05 16 41 H 0.10 1.83 6.67 -51.93 -0.35 1.48 16 LS Contribution 346.68 15.07 5.22 5.22 Total: -1.00 -31.23 346.68 -7.92 -39.16 By element: Atomic # 1 Polarization: 3.47 SS G_CDS: -4.96 Total: -1.49 kcal Atomic # 6 Polarization: 6.28 SS G_CDS: -2.37 Total: 3.92 kcal Atomic # 7 Polarization: -49.34 SS G_CDS: -0.97 Total: -50.30 kcal Atomic # 8 Polarization: -8.93 SS G_CDS: 0.09 Total: -8.84 kcal Atomic # 9 Polarization: -3.46 SS G_CDS: 0.08 Total: -3.38 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -5.02 Total: 15.72 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -31.23 -7.92 -39.16 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602197904.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.718 kcal (2) G-P(sol) polarization free energy of solvation -31.234 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.951 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.924 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.158 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.875 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds