Wall clock time and date at job start Tue Mar 31 2020 14:05:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31506 * 1 3 3 Si 1.86804 * 120.00458 * 2 1 4 4 H 1.48499 * 109.47015 * 270.00291 * 3 2 1 5 5 H 1.48502 * 109.46777 * 29.99871 * 3 2 1 6 6 H 1.48496 * 109.47224 * 149.99977 * 3 2 1 7 7 C 1.37888 * 119.99902 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99894 * 179.97438 * 7 2 1 9 9 C 1.50697 * 119.99694 * 359.97438 * 7 2 1 10 10 N 1.46898 * 109.46928 * 179.97438 * 9 7 2 11 11 C 1.46899 * 110.99942 * 170.00344 * 10 9 7 12 12 C 1.53244 * 109.33871 * 187.25352 * 11 10 9 13 13 N 1.47079 * 108.52310 * 306.16971 * 12 11 10 14 14 C 1.34777 * 120.87890 * 231.18939 * 13 12 11 15 15 O 1.21553 * 120.00263 * 5.99662 * 14 13 12 16 16 C 1.47839 * 119.99852 * 186.00150 * 14 13 12 17 17 C 1.40022 * 120.55854 * 213.14568 * 16 14 13 18 18 C 1.38359 * 118.28830 * 180.02562 * 17 16 14 19 19 C 1.38353 * 119.30407 * 359.97438 * 18 17 16 20 20 C 1.50704 * 119.45998 * 179.97438 * 19 18 17 21 21 F 1.39896 * 109.47012 * 300.00088 * 20 19 18 22 22 F 1.39901 * 109.46698 * 60.00267 * 20 19 18 23 23 N 1.31928 * 121.07861 * 0.25864 * 19 18 17 24 24 C 1.31696 * 121.87603 * 359.46705 * 23 19 18 25 25 C 1.47078 * 118.23623 * 51.45336 * 13 12 11 26 26 C 1.46905 * 110.99973 * 294.30259 * 10 9 7 27 27 H 0.97005 * 120.00051 * 359.97438 * 1 2 3 28 28 H 1.09005 * 109.47088 * 60.00127 * 9 7 2 29 29 H 1.08998 * 109.47793 * 300.00188 * 9 7 2 30 30 H 1.09000 * 109.49681 * 67.29567 * 11 10 9 31 31 H 1.09000 * 109.49478 * 307.20860 * 11 10 9 32 32 H 1.09001 * 109.62998 * 186.45860 * 12 11 10 33 33 H 1.09003 * 109.62626 * 65.88034 * 12 11 10 34 34 H 1.07994 * 120.85824 * 0.04334 * 17 16 14 35 35 H 1.08004 * 120.34743 * 180.02562 * 18 17 16 36 36 H 1.09002 * 109.46803 * 180.02562 * 20 19 18 37 37 H 1.08002 * 119.70893 * 180.26698 * 24 23 19 38 38 H 1.09002 * 109.62883 * 68.25800 * 25 13 12 39 39 H 1.08997 * 109.62842 * 188.83026 * 25 13 12 40 40 H 1.09000 * 109.49116 * 292.70177 * 26 10 9 41 41 H 1.08995 * 109.49384 * 52.79012 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1942 -0.0005 8 1 3.0844 -1.1942 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 7 2.2055 -3.6158 -0.0018 11 6 1.5211 -4.8936 0.2362 12 6 2.5638 -6.0035 0.4078 13 7 3.4608 -5.9860 -0.7577 14 6 3.7105 -7.1118 -1.4553 15 8 3.1096 -8.1353 -1.1929 16 6 4.7154 -7.1020 -2.5397 17 6 4.5500 -7.9105 -3.6709 18 6 5.5195 -7.8647 -4.6569 19 6 6.6105 -7.0293 -4.4956 20 6 7.6689 -6.9770 -5.5672 21 9 8.2292 -8.2483 -5.7315 22 9 7.0920 -6.5623 -6.7724 23 7 6.7422 -6.2817 -3.4166 24 6 5.8441 -6.2865 -2.4533 25 6 4.0827 -4.7086 -1.1381 26 6 2.9756 -3.6486 -1.2523 27 1 -0.4850 0.8401 0.0004 28 1 0.6239 -2.5567 -0.8903 29 1 0.6245 -2.5572 0.8896 30 1 0.8789 -5.1261 -0.6132 31 1 0.9167 -4.8197 1.1403 32 1 2.0633 -6.9697 0.4701 33 1 3.1401 -5.8272 1.3160 34 1 3.6879 -8.5530 -3.7712 35 1 5.4252 -8.4741 -5.5436 36 1 8.4473 -6.2722 -5.2750 37 1 5.9851 -5.6572 -1.5870 38 1 4.8022 -4.4102 -0.3756 39 1 4.5868 -4.8184 -2.0982 40 1 2.3131 -3.8984 -2.0810 41 1 3.4260 -2.6717 -1.4279 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602197904.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:05:39 Heat of formation + Delta-G solvation = -94.579017 kcal Electronic energy + Delta-G solvation = -27192.029837 eV Core-core repulsion = 22935.468901 eV Total energy + Delta-G solvation = -4256.560936 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.134 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -50.10678 -48.09680 -42.14737 -40.60538 -39.00801 -36.16463 -34.59815 -34.04692 -33.45808 -32.00918 -30.14625 -28.48055 -27.14944 -25.47355 -24.59503 -24.32068 -23.49089 -22.18942 -20.51440 -19.12797 -18.87368 -18.50329 -18.35547 -18.29366 -17.60841 -16.96775 -16.71817 -16.47489 -16.13953 -15.87314 -15.58917 -15.35210 -15.28902 -15.19492 -14.81580 -14.55127 -14.46311 -14.37082 -14.31415 -14.01433 -13.54567 -13.51320 -13.06216 -12.76801 -12.63181 -12.48021 -12.37870 -12.29686 -12.17895 -11.82061 -11.42037 -11.28651 -11.21809 -10.78636 -10.61945 -10.43896 -9.89312 -9.10226 -8.20082 -6.30345 -0.75717 -0.07042 1.42511 1.44454 1.45528 1.56887 1.71737 2.15883 2.37938 2.41863 3.08345 3.12435 3.16326 3.21411 3.26638 3.53598 3.61373 3.81127 3.87671 3.93248 3.98426 4.08750 4.18268 4.19537 4.36639 4.39011 4.46230 4.66158 4.68352 4.76583 4.82616 4.90634 4.96660 5.15788 5.18018 5.20942 5.34172 5.64086 6.01539 6.12253 6.27490 6.41424 6.53577 6.83970 6.85756 7.39929 8.91291 Molecular weight = 325.13amu Principal moments of inertia in cm(-1) A = 0.014322 B = 0.002947 C = 0.002549 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1954.620837 B = 9499.827034 C =10982.350807 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C 0.000 4.000 3 Si 0.969 3.031 4 H -0.274 1.274 5 H -0.287 1.287 6 H -0.259 1.259 7 C -0.521 4.521 8 H 0.072 0.928 9 C 0.208 3.792 10 N -0.535 5.535 11 C 0.041 3.959 12 C 0.128 3.872 13 N -0.600 5.600 14 C 0.564 3.436 15 O -0.568 6.568 16 C -0.173 4.173 17 C -0.022 4.022 18 C -0.136 4.136 19 C 0.059 3.941 20 C 0.327 3.673 21 F -0.197 7.197 22 F -0.198 7.198 23 N -0.465 5.465 24 C 0.133 3.867 25 C 0.107 3.893 26 C 0.049 3.951 27 H 0.263 0.737 28 H -0.043 1.043 29 H 0.006 0.994 30 H 0.013 0.987 31 H 0.085 0.915 32 H 0.094 0.906 33 H 0.094 0.906 34 H 0.159 0.841 35 H 0.170 0.830 36 H 0.161 0.839 37 H 0.195 0.805 38 H 0.106 0.894 39 H 0.109 0.891 40 H 0.011 0.989 41 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.642 -14.974 -8.821 23.382 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.198 4.198 3 Si 0.794 3.206 4 H -0.199 1.199 5 H -0.213 1.213 6 H -0.183 1.183 7 C -0.559 4.559 8 H 0.090 0.910 9 C 0.082 3.918 10 N -0.260 5.260 11 C -0.088 4.088 12 C 0.005 3.995 13 N -0.331 5.331 14 C 0.353 3.647 15 O -0.448 6.448 16 C -0.178 4.178 17 C -0.048 4.048 18 C -0.156 4.156 19 C -0.079 4.079 20 C 0.273 3.727 21 F -0.178 7.178 22 F -0.179 7.179 23 N -0.174 5.174 24 C -0.025 4.025 25 C -0.015 4.015 26 C -0.080 4.080 27 H 0.072 0.928 28 H -0.025 1.025 29 H 0.024 0.976 30 H 0.032 0.968 31 H 0.103 0.897 32 H 0.113 0.887 33 H 0.113 0.887 34 H 0.176 0.824 35 H 0.187 0.813 36 H 0.178 0.822 37 H 0.212 0.788 38 H 0.124 0.876 39 H 0.127 0.873 40 H 0.029 0.971 41 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 16.242 -14.804 -8.246 23.473 hybrid contribution -1.906 0.287 -0.727 2.060 sum 14.336 -14.518 -8.973 22.289 Atomic orbital electron populations 1.70093 1.07928 1.27903 1.51852 1.25939 0.95660 1.03339 0.94834 0.85375 0.78719 0.78144 0.78356 1.19932 1.21303 1.18322 1.21470 0.93932 0.90593 1.49887 0.90966 1.19378 0.90082 0.88933 0.93416 1.62037 1.27046 1.02569 1.34370 1.22464 0.95695 0.90003 1.00623 1.21746 0.91305 0.98611 0.87795 1.48187 1.46484 1.08546 1.29920 1.18272 0.82001 0.83022 0.81438 1.90766 1.51942 1.32995 1.69136 1.21044 0.98110 1.01522 0.97081 1.21879 0.98696 0.93951 0.90318 1.22129 0.93316 0.99209 1.00944 1.22058 0.96103 0.94927 0.94838 1.20308 0.91543 0.82347 0.78517 1.93030 1.85665 1.43381 1.95749 1.93036 1.86671 1.90131 1.48066 1.67362 1.28916 1.20204 1.00871 1.23578 0.87616 0.94011 0.97335 1.22635 0.95339 0.80754 1.02795 1.22461 0.95536 1.00122 0.89854 0.92780 1.02511 0.97556 0.96842 0.89663 0.88725 0.88738 0.82361 0.81290 0.82217 0.78849 0.87590 0.87292 0.97078 0.89227 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -55.22 13.29 21.45 0.28 -54.94 16 2 C 0.00 0.01 5.46 84.66 0.46 0.47 16 3 Si 0.97 42.37 29.54 68.60 2.03 44.39 16 4 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16 5 H -0.29 -12.51 7.11 99.48 0.71 -11.80 16 6 H -0.26 -10.71 7.11 99.48 0.71 -10.00 16 7 C -0.52 -27.79 8.41 25.60 0.22 -27.58 16 8 H 0.07 3.67 7.13 -2.91 -0.02 3.64 16 9 C 0.21 10.59 4.72 85.56 0.40 11.00 16 10 N -0.54 -21.21 4.62 -898.87 -4.15 -25.36 16 11 C 0.04 1.40 5.62 86.39 0.49 1.88 16 12 C 0.13 3.48 6.61 86.35 0.57 4.05 16 13 N -0.60 -15.61 3.00 -820.45 -2.46 -18.07 16 14 C 0.56 14.97 7.44 86.78 0.65 15.62 16 15 O -0.57 -18.46 16.30 -3.88 -0.06 -18.52 16 16 C -0.17 -3.67 5.36 -19.99 -0.11 -3.78 16 17 C -0.02 -0.41 9.75 22.73 0.22 -0.19 16 18 C -0.14 -2.16 9.60 22.33 0.21 -1.95 16 19 C 0.06 0.99 6.28 42.57 0.27 1.26 16 20 C 0.33 4.38 5.54 71.24 0.39 4.77 16 21 F -0.20 -3.03 17.25 44.97 0.78 -2.26 16 22 F -0.20 -3.19 17.25 44.97 0.78 -2.41 16 23 N -0.46 -8.54 10.23 -182.81 -1.87 -10.41 16 24 C 0.13 2.44 8.58 85.02 0.73 3.17 16 25 C 0.11 2.54 4.91 86.50 0.42 2.97 16 26 C 0.05 1.67 5.47 86.54 0.47 2.15 16 27 H 0.26 14.66 8.31 -92.70 -0.77 13.89 16 28 H -0.04 -2.43 8.12 -2.38 -0.02 -2.45 16 29 H 0.01 0.35 7.97 -2.39 -0.02 0.33 16 30 H 0.01 0.49 8.14 -2.39 -0.02 0.47 16 31 H 0.09 2.84 7.99 -2.39 -0.02 2.82 16 32 H 0.09 2.56 7.04 -2.39 -0.02 2.55 16 33 H 0.09 2.32 8.14 -2.39 -0.02 2.30 16 34 H 0.16 2.69 8.03 -2.91 -0.02 2.67 16 35 H 0.17 1.90 8.06 -2.91 -0.02 1.87 16 36 H 0.16 1.34 8.10 -2.39 -0.02 1.32 16 37 H 0.19 2.85 5.79 -2.91 -0.02 2.83 16 38 H 0.11 2.17 7.97 -2.39 -0.02 2.15 16 39 H 0.11 2.15 4.54 -2.39 -0.01 2.14 16 40 H 0.01 0.40 8.14 -2.39 -0.02 0.39 16 41 H 0.09 3.24 6.67 -2.39 -0.02 3.22 16 Total: -1.00 -68.06 346.68 1.78 -66.28 By element: Atomic # 1 Polarization: 6.39 SS G_CDS: 1.07 Total: 7.45 kcal Atomic # 6 Polarization: 8.44 SS G_CDS: 5.40 Total: 13.84 kcal Atomic # 7 Polarization: -100.58 SS G_CDS: -8.20 Total: -108.78 kcal Atomic # 8 Polarization: -18.46 SS G_CDS: -0.06 Total: -18.52 kcal Atomic # 9 Polarization: -6.22 SS G_CDS: 1.55 Total: -4.67 kcal Atomic # 14 Polarization: 42.37 SS G_CDS: 2.03 Total: 44.39 kcal Total: -68.06 1.78 -66.28 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602197904.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.298 kcal (2) G-P(sol) polarization free energy of solvation -68.063 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.361 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.782 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.281 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.579 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds