Wall clock time and date at job start Tue Mar 31 2020 14:02:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86798 * 120.00373 * 2 1 4 4 H 1.48507 * 109.46910 * 269.99740 * 3 2 1 5 5 H 1.48498 * 109.46991 * 29.99258 * 3 2 1 6 6 H 1.48492 * 109.47436 * 149.99787 * 3 2 1 7 7 C 1.38814 * 119.99533 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99571 * 183.41301 * 7 2 1 9 9 N 1.36932 * 120.00318 * 3.41140 * 7 2 1 10 10 C 1.46919 * 120.63437 * 144.19960 * 9 7 2 11 11 C 1.53198 * 108.89622 * 126.34146 * 10 9 7 12 12 C 1.53351 * 109.14923 * 54.57852 * 11 10 9 13 13 N 1.46496 * 109.41893 * 178.67928 * 12 11 10 14 14 C 1.34773 * 119.99632 * 275.12895 * 13 12 11 15 15 O 1.21592 * 120.00383 * 359.97438 * 14 13 12 16 16 N 1.34784 * 120.00067 * 179.97438 * 14 13 12 17 17 C 1.40072 * 120.00031 * 183.74088 * 16 14 13 18 18 C 1.38780 * 120.06648 * 325.81636 * 17 16 14 19 19 C 1.38346 * 119.93007 * 179.78682 * 18 17 16 20 20 F 1.35103 * 119.97107 * 180.22898 * 19 18 17 21 21 C 1.38490 * 120.05839 * 0.49249 * 19 18 17 22 22 C 1.38255 * 120.12758 * 359.74019 * 21 19 18 23 23 C 1.38295 * 120.07149 * 0.02562 * 22 21 19 24 24 F 1.35096 * 120.03152 * 179.97438 * 23 22 21 25 25 C 1.53044 * 109.60582 * 298.71331 * 12 11 10 26 26 C 1.46928 * 120.62827 * 324.22070 * 9 7 2 27 27 H 0.97001 * 119.99611 * 0.02562 * 1 2 3 28 28 H 1.09002 * 109.58799 * 246.19926 * 10 9 7 29 29 H 1.08999 * 109.58602 * 6.48542 * 10 9 7 30 30 H 1.08996 * 109.49700 * 174.66489 * 11 10 9 31 31 H 1.09001 * 109.49422 * 294.75247 * 11 10 9 32 32 H 1.08994 * 109.41719 * 58.75276 * 12 11 10 33 33 H 0.96995 * 120.00578 * 95.12625 * 13 12 11 34 34 H 0.97003 * 119.99813 * 3.74985 * 16 14 13 35 35 H 1.08000 * 120.03320 * 0.02562 * 18 17 16 36 36 H 1.08001 * 119.93478 * 179.72447 * 21 19 18 37 37 H 1.08002 * 119.96591 * 180.02562 * 22 21 19 38 38 H 1.08997 * 109.49972 * 301.42451 * 25 12 11 39 39 H 1.08999 * 109.49386 * 181.32470 * 25 12 11 40 40 H 1.08999 * 109.58829 * 353.36912 * 26 9 7 41 41 H 1.09002 * 109.58887 * 113.66151 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4979 2.0463 -1.4002 5 1 1.4477 2.6527 0.6999 6 1 3.5478 1.4401 0.7000 7 6 2.0102 -1.2022 0.0005 8 1 3.0888 -1.2030 0.0562 9 7 1.3273 -2.3870 -0.0695 10 6 1.8792 -3.5263 -0.8152 11 6 1.9188 -4.7498 0.1058 12 6 0.5184 -4.9912 0.6821 13 7 0.5424 -6.1790 1.5392 14 6 0.3931 -7.4040 0.9975 15 8 0.2379 -7.5232 -0.2026 16 7 0.4157 -8.4969 1.7859 17 6 0.3392 -9.7738 1.2153 18 6 -0.4223 -9.9808 0.0737 19 6 -0.4924 -11.2422 -0.4900 20 9 -1.2297 -11.4436 -1.6040 21 6 0.1883 -12.2998 0.0896 22 6 0.9438 -12.0974 1.2297 23 6 1.0215 -10.8377 1.7949 24 9 1.7595 -10.6409 2.9092 25 6 0.0859 -3.7764 1.5064 26 6 0.0284 -2.5431 0.5994 27 1 -0.4849 0.8401 -0.0004 28 1 1.2478 -3.7387 -1.6780 29 1 2.8887 -3.2888 -1.1508 30 1 2.2373 -5.6233 -0.4631 31 1 2.6208 -4.5697 0.9200 32 1 -0.1874 -5.1463 -0.1338 33 1 0.6659 -6.0839 2.4966 34 1 0.4849 -8.3991 2.7485 35 1 -0.9566 -9.1571 -0.3763 36 1 0.1287 -13.2847 -0.3496 37 1 1.4739 -12.9240 1.6793 38 1 0.8050 -3.6056 2.3075 39 1 -0.8997 -3.9594 1.9344 40 1 -0.1823 -1.6579 1.1994 41 1 -0.7543 -2.6728 -0.1481 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000609338462.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:02:20 Heat of formation + Delta-G solvation = -87.128365 kcal Electronic energy + Delta-G solvation = -27088.563157 eV Core-core repulsion = 22832.325306 eV Total energy + Delta-G solvation = -4256.237852 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.134 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -49.98503 -49.96797 -41.82669 -39.88521 -38.88155 -36.18358 -35.87732 -33.97734 -31.98408 -31.51249 -31.15835 -30.10119 -26.96534 -24.94214 -24.00382 -23.78493 -23.26699 -22.00030 -21.10552 -19.92580 -19.31905 -18.60214 -18.53783 -17.88758 -17.39640 -16.99109 -16.87447 -16.45074 -16.29628 -16.20310 -15.77564 -15.40980 -15.32906 -15.26310 -14.97041 -14.77403 -14.41911 -14.12158 -14.07600 -13.68257 -13.29730 -13.16379 -12.81631 -12.75111 -12.63825 -12.53270 -12.19040 -12.01762 -11.88118 -11.65102 -11.63124 -11.39516 -11.21711 -10.55096 -10.17222 -9.85811 -9.26601 -8.58062 -7.88055 -5.44270 -0.16718 -0.00793 1.32710 1.47773 1.49757 1.57939 1.87062 2.38742 2.49811 2.89430 3.04531 3.22708 3.30005 3.60537 3.68672 3.87795 3.93200 4.02535 4.06976 4.31048 4.33055 4.46712 4.64938 4.73220 4.79555 4.86706 4.92915 4.99023 5.00834 5.03726 5.07242 5.15620 5.19813 5.29582 5.47151 5.53227 5.64522 5.71977 5.77243 5.83613 6.45661 6.83331 7.17504 7.33166 7.82969 8.38386 9.16856 Molecular weight = 325.13amu Principal moments of inertia in cm(-1) A = 0.028121 B = 0.002389 C = 0.002304 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 995.454742 B =11717.346164 C =12150.304970 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.043 4.043 3 Si 0.970 3.030 4 H -0.287 1.287 5 H -0.292 1.292 6 H -0.268 1.268 7 C -0.267 4.267 8 H 0.065 0.935 9 N -0.611 5.611 10 C 0.146 3.854 11 C -0.125 4.125 12 C 0.180 3.820 13 N -0.716 5.716 14 C 0.703 3.297 15 O -0.608 6.608 16 N -0.672 5.672 17 C 0.155 3.845 18 C -0.154 4.154 19 C 0.097 3.903 20 F -0.142 7.142 21 C -0.131 4.131 22 C -0.090 4.090 23 C 0.056 3.944 24 F -0.133 7.133 25 C -0.129 4.129 26 C 0.175 3.825 27 H 0.252 0.748 28 H 0.008 0.992 29 H 0.057 0.943 30 H 0.058 0.942 31 H 0.065 0.935 32 H 0.061 0.939 33 H 0.413 0.587 34 H 0.426 0.574 35 H 0.137 0.863 36 H 0.178 0.822 37 H 0.186 0.814 38 H 0.069 0.931 39 H 0.077 0.923 40 H 0.074 0.926 41 H -0.007 1.007 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.751 -25.882 8.015 27.105 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.239 4.239 3 Si 0.797 3.203 4 H -0.214 1.214 5 H -0.218 1.218 6 H -0.192 1.192 7 C -0.397 4.397 8 H 0.083 0.917 9 N -0.335 5.335 10 C 0.019 3.981 11 C -0.166 4.166 12 C 0.075 3.925 13 N -0.370 5.370 14 C 0.403 3.597 15 O -0.488 6.488 16 N -0.322 5.322 17 C 0.058 3.942 18 C -0.175 4.175 19 C 0.077 3.923 20 F -0.121 7.121 21 C -0.150 4.150 22 C -0.109 4.109 23 C 0.034 3.966 24 F -0.112 7.112 25 C -0.169 4.169 26 C 0.049 3.951 27 H 0.061 0.939 28 H 0.026 0.974 29 H 0.075 0.925 30 H 0.077 0.923 31 H 0.084 0.916 32 H 0.079 0.921 33 H 0.250 0.750 34 H 0.265 0.735 35 H 0.155 0.845 36 H 0.195 0.805 37 H 0.203 0.797 38 H 0.088 0.912 39 H 0.095 0.905 40 H 0.092 0.908 41 H 0.011 0.989 Dipole moment (debyes) X Y Z Total from point charges 0.528 -25.718 6.973 26.652 hybrid contribution 0.148 1.536 0.420 1.600 sum 0.676 -24.182 7.393 25.296 Atomic orbital electron populations 1.70065 1.06657 1.25898 1.55235 1.26074 0.96357 1.01486 0.99959 0.85246 0.78194 0.79372 0.77468 1.21405 1.21784 1.19242 1.19461 0.91000 0.84206 1.45010 0.91709 1.44263 1.21140 1.10111 1.57993 1.20962 0.97222 0.87350 0.92544 1.22260 0.96878 0.97659 0.99754 1.20666 0.96787 0.82634 0.92381 1.45167 1.76455 1.03462 1.11888 1.16041 0.77681 0.81069 0.84899 1.90929 1.57514 1.85601 1.14707 1.42328 1.76715 1.02186 1.10932 1.17255 0.97209 0.84021 0.95737 1.21102 1.01295 0.97369 0.97770 1.17713 0.95182 0.94086 0.85335 1.91506 1.75003 1.95591 1.49980 1.21300 0.97516 0.99736 0.96474 1.21191 0.98961 0.95474 0.95233 1.17544 0.96619 0.94414 0.88023 1.91505 1.74575 1.95836 1.49242 1.22302 1.01464 0.94289 0.98807 1.20706 0.85751 0.95478 0.93146 0.93887 0.97381 0.92457 0.92333 0.91607 0.92121 0.75015 0.73466 0.84521 0.80455 0.79659 0.91187 0.90473 0.90774 0.98915 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.18 10.68 21.65 0.23 -53.95 16 2 C -0.04 -2.37 5.30 84.86 0.45 -1.92 16 3 Si 0.97 44.21 29.55 68.60 2.03 46.24 16 4 H -0.29 -13.09 7.11 99.48 0.71 -12.38 16 5 H -0.29 -13.25 7.11 99.48 0.71 -12.54 16 6 H -0.27 -11.60 7.11 99.48 0.71 -10.90 16 7 C -0.27 -14.54 9.55 84.03 0.80 -13.74 16 8 H 0.07 3.44 7.83 -2.91 -0.02 3.42 16 9 N -0.61 -30.71 3.00 -699.08 -2.10 -32.80 16 10 C 0.15 6.30 6.50 86.37 0.56 6.86 16 11 C -0.13 -4.46 5.68 30.78 0.17 -4.28 16 12 C 0.18 6.00 2.42 45.12 0.11 6.11 16 13 N -0.72 -18.07 5.08 -457.19 -2.32 -20.40 16 14 C 0.70 19.50 8.37 179.05 1.50 21.00 16 15 O -0.61 -22.09 13.41 -4.00 -0.05 -22.14 16 16 N -0.67 -13.83 5.24 -317.00 -1.66 -15.49 16 17 C 0.16 3.30 6.32 38.15 0.24 3.54 16 18 C -0.15 -3.74 8.67 22.43 0.19 -3.54 16 19 C 0.10 1.96 7.30 22.36 0.16 2.12 16 20 F -0.14 -3.24 17.27 44.97 0.78 -2.47 16 21 C -0.13 -1.64 10.02 22.33 0.22 -1.42 16 22 C -0.09 -0.99 10.02 22.29 0.22 -0.77 16 23 C 0.06 0.92 7.31 22.48 0.16 1.09 16 24 F -0.13 -2.16 16.94 44.97 0.76 -1.40 16 25 C -0.13 -4.48 5.55 30.68 0.17 -4.31 16 26 C 0.18 8.31 5.25 86.36 0.45 8.76 16 27 H 0.25 14.14 8.31 -92.71 -0.77 13.37 16 28 H 0.01 0.37 8.14 -2.39 -0.02 0.35 16 29 H 0.06 2.42 7.93 -2.39 -0.02 2.40 16 30 H 0.06 2.06 8.14 -2.39 -0.02 2.04 16 31 H 0.07 2.25 8.14 -2.39 -0.02 2.23 16 32 H 0.06 2.35 7.58 -2.39 -0.02 2.33 16 33 H 0.41 7.49 8.62 -92.71 -0.80 6.69 16 34 H 0.43 5.88 8.66 -92.71 -0.80 5.08 16 35 H 0.14 4.11 6.18 -2.91 -0.02 4.09 16 36 H 0.18 1.09 8.06 -2.91 -0.02 1.06 16 37 H 0.19 0.73 8.06 -2.91 -0.02 0.71 16 38 H 0.07 2.32 8.14 -2.39 -0.02 2.30 16 39 H 0.08 2.34 8.14 -2.39 -0.02 2.33 16 40 H 0.07 3.96 5.98 -2.39 -0.01 3.94 16 41 H -0.01 -0.38 8.14 -2.39 -0.02 -0.39 16 Total: -1.00 -69.36 346.81 2.59 -66.77 By element: Atomic # 1 Polarization: 16.66 SS G_CDS: -0.51 Total: 16.15 kcal Atomic # 6 Polarization: 14.06 SS G_CDS: 5.43 Total: 19.49 kcal Atomic # 7 Polarization: -116.80 SS G_CDS: -5.85 Total: -122.64 kcal Atomic # 8 Polarization: -22.09 SS G_CDS: -0.05 Total: -22.14 kcal Atomic # 9 Polarization: -5.40 SS G_CDS: 1.54 Total: -3.86 kcal Atomic # 14 Polarization: 44.21 SS G_CDS: 2.03 Total: 46.24 kcal Total: -69.36 2.59 -66.77 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609338462.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.358 kcal (2) G-P(sol) polarization free energy of solvation -69.357 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.715 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.587 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.770 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.128 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds