Wall clock time and date at job start Tue Mar 31 2020 14:16:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31157 * 1 3 3 Cl 1.73595 * 120.00190 * 2 1 4 4 C 1.50703 * 119.99914 * 179.97438 * 2 1 3 5 5 N 1.46496 * 109.46871 * 115.00460 * 4 2 1 6 6 C 1.34784 * 119.99741 * 180.02562 * 5 4 2 7 7 O 1.21281 * 120.00093 * 359.97438 * 6 5 4 8 8 C 1.50696 * 119.99865 * 179.97438 * 6 5 4 9 9 C 1.53000 * 109.47110 * 179.97438 * 8 6 5 10 10 C 1.50706 * 109.47116 * 179.97438 * 9 8 6 11 11 C 1.39862 * 126.04094 * 269.68901 * 10 9 8 12 12 C 1.50702 * 125.90180 * 0.02562 * 11 10 9 13 13 N 1.30842 * 108.19992 * 179.81747 * 11 10 9 14 14 N 1.40084 * 108.20663 * 0.44091 * 13 11 10 15 15 C 1.46495 * 126.04013 * 179.73793 * 14 13 11 16 16 C 1.50699 * 109.47131 * 269.98016 * 15 14 13 17 17 H 1.08002 * 119.99767 * 359.97438 * 16 15 14 18 18 C 1.37881 * 120.00208 * 179.97438 * 16 15 14 19 19 N 1.31511 * 119.99755 * 359.97438 * 18 16 15 20 20 Si 1.86795 * 120.00053 * 179.97438 * 18 16 15 21 21 H 1.48495 * 109.47257 * 89.99976 * 20 18 16 22 22 H 1.48501 * 109.46940 * 210.00122 * 20 18 16 23 23 H 1.48499 * 109.47462 * 329.99632 * 20 18 16 24 24 C 1.34950 * 107.92381 * 359.71898 * 14 13 11 25 25 C 1.50694 * 126.12576 * 179.97438 * 24 14 13 26 26 H 1.08006 * 120.00059 * 180.02562 * 1 2 3 27 27 H 1.08000 * 119.99972 * 0.02562 * 1 2 3 28 28 H 1.09000 * 109.47308 * 354.99779 * 4 2 1 29 29 H 1.09000 * 109.46976 * 234.99924 * 4 2 1 30 30 H 0.96998 * 120.00681 * 359.97438 * 5 4 2 31 31 H 1.09000 * 109.47543 * 59.99570 * 8 6 5 32 32 H 1.09008 * 109.47338 * 300.00084 * 8 6 5 33 33 H 1.09000 * 109.46884 * 60.00335 * 9 8 6 34 34 H 1.09000 * 109.46955 * 299.99651 * 9 8 6 35 35 H 1.08998 * 109.47393 * 89.99256 * 12 11 10 36 36 H 1.09001 * 109.46747 * 209.99996 * 12 11 10 37 37 H 1.08998 * 109.46776 * 329.99757 * 12 11 10 38 38 H 1.09001 * 109.47188 * 29.97306 * 15 14 13 39 39 H 1.08997 * 109.47530 * 149.97532 * 15 14 13 40 40 H 0.96999 * 120.00262 * 179.97438 * 19 18 16 41 41 H 1.09000 * 109.47170 * 270.02464 * 25 24 14 42 42 H 1.09004 * 109.47112 * 30.02444 * 25 24 14 43 43 H 1.09003 * 109.46820 * 150.02019 * 25 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3116 0.0000 0.0000 3 17 2.1796 1.5033 0.0000 4 6 2.0651 -1.3051 0.0006 5 7 2.8148 -1.4366 -1.2511 6 6 3.5671 -2.5326 -1.4740 7 8 3.6237 -3.4095 -0.6382 8 6 4.3379 -2.6681 -2.7618 9 6 5.1030 -3.9931 -2.7612 10 6 5.8733 -4.1290 -4.0494 11 6 5.4081 -4.7215 -5.2278 12 6 4.0470 -5.3357 -5.4305 13 7 6.3573 -4.6466 -6.1252 14 7 7.4618 -4.0120 -5.5422 15 6 8.7407 -3.7314 -6.1993 16 6 9.6765 -4.8948 -5.9946 17 1 9.3512 -5.7568 -5.4311 18 6 10.9479 -4.8588 -6.5269 19 7 11.3438 -3.8094 -7.2135 20 14 12.1081 -6.3005 -6.2726 21 1 11.9396 -7.2731 -7.3820 22 1 13.5097 -5.8104 -6.2525 23 1 11.7973 -6.9642 -4.9810 24 6 7.1394 -3.7044 -4.2684 25 6 8.0300 -3.0126 -3.2688 26 1 -0.5400 -0.9354 0.0004 27 1 -0.5400 0.9353 -0.0004 28 1 1.3602 -2.1316 0.0906 29 1 2.7572 -1.3247 0.8424 30 1 2.7693 -0.7355 -1.9198 31 1 5.0430 -1.8418 -2.8520 32 1 3.6455 -2.6483 -3.6036 33 1 4.3981 -4.8196 -2.6710 34 1 5.7954 -4.0124 -1.9196 35 1 3.3554 -4.5751 -5.7928 36 1 4.1170 -6.1411 -6.1617 37 1 3.6840 -5.7352 -4.4836 38 1 8.5757 -3.5812 -7.2662 39 1 9.1804 -2.8315 -5.7694 40 1 12.2383 -3.7838 -7.5877 41 1 8.6040 -3.7572 -2.7172 42 1 8.7121 -2.3427 -3.7924 43 1 7.4180 -2.4375 -2.5739 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000736246602.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:16:03 Heat of formation + Delta-G solvation = 22.759950 kcal Electronic energy + Delta-G solvation = -24388.849534 eV Core-core repulsion = 20689.173478 eV Total energy + Delta-G solvation = -3699.676056 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 325.130 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.62521 -39.79440 -37.48392 -35.60324 -34.38099 -33.40326 -32.91694 -32.48207 -30.31875 -28.96902 -27.57660 -26.07012 -25.85654 -23.60521 -22.15863 -20.99199 -20.22643 -18.80341 -18.63408 -17.37675 -16.71821 -16.63837 -16.06773 -15.56083 -15.25249 -14.71933 -14.47299 -14.27465 -13.89090 -13.68892 -13.21527 -13.06494 -12.91121 -12.68571 -12.50784 -12.45681 -12.29755 -12.22704 -12.07544 -11.78746 -11.64381 -11.33778 -11.31875 -11.25218 -10.96951 -10.79774 -10.71873 -10.26252 -10.11068 -9.75795 -9.70483 -9.58559 -9.36601 -8.64759 -8.17586 -7.47007 -6.26469 -4.33690 1.19746 1.69417 2.55835 2.76000 3.04128 3.21581 3.27732 3.32102 3.42018 3.62342 3.97460 4.29677 4.72496 4.85540 5.01898 5.07233 5.19129 5.20194 5.28226 5.34691 5.42020 5.48413 5.62339 5.66014 5.76266 5.82631 5.94364 5.98275 6.03393 6.06734 6.08245 6.24512 6.37863 6.46057 6.55553 6.86260 7.03328 7.12249 7.24115 7.52152 7.66446 7.88484 8.05727 8.07716 8.67214 8.75819 9.32722 10.81138 Molecular weight = 325.13amu Principal moments of inertia in cm(-1) A = 0.020500 B = 0.002230 C = 0.002136 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1365.521843 B =12551.612422 C =13105.103705 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.095 4.095 3 Cl -0.078 7.078 4 C 0.159 3.841 5 N -0.735 5.735 6 C 0.516 3.484 7 O -0.538 6.538 8 C -0.133 4.133 9 C -0.010 4.010 10 C -0.269 4.269 11 C 0.050 3.950 12 C -0.064 4.064 13 N -0.297 5.297 14 N -0.325 5.325 15 C 0.257 3.743 16 C -0.535 4.535 17 H 0.064 0.936 18 C 0.065 3.935 19 N -0.892 5.892 20 Si 0.906 3.094 21 H -0.277 1.277 22 H -0.283 1.283 23 H -0.272 1.272 24 C 0.094 3.906 25 C -0.086 4.086 26 H 0.127 0.873 27 H 0.117 0.883 28 H 0.088 0.912 29 H 0.083 0.917 30 H 0.403 0.597 31 H 0.093 0.907 32 H 0.093 0.907 33 H 0.069 0.931 34 H 0.068 0.932 35 H 0.065 0.935 36 H 0.065 0.935 37 H 0.069 0.931 38 H 0.051 0.949 39 H 0.051 0.949 40 H 0.268 0.732 41 H 0.077 0.923 42 H 0.072 0.928 43 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.752 9.382 13.554 26.503 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.122 4.122 3 Cl -0.050 7.050 4 C 0.035 3.965 5 N -0.389 5.389 6 C 0.304 3.696 7 O -0.414 6.414 8 C -0.173 4.173 9 C -0.049 4.049 10 C -0.281 4.281 11 C -0.114 4.114 12 C -0.123 4.123 13 N -0.121 5.121 14 N -0.104 5.104 15 C 0.139 3.861 16 C -0.573 4.573 17 H 0.082 0.918 18 C -0.138 4.138 19 N -0.530 5.530 20 Si 0.733 3.267 21 H -0.203 1.203 22 H -0.209 1.209 23 H -0.197 1.197 24 C -0.037 4.037 25 C -0.144 4.144 26 H 0.145 0.855 27 H 0.135 0.865 28 H 0.106 0.894 29 H 0.102 0.898 30 H 0.238 0.762 31 H 0.111 0.889 32 H 0.111 0.889 33 H 0.087 0.913 34 H 0.086 0.914 35 H 0.084 0.916 36 H 0.084 0.916 37 H 0.088 0.912 38 H 0.069 0.931 39 H 0.069 0.931 40 H 0.077 0.923 41 H 0.096 0.904 42 H 0.091 0.909 43 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -19.956 8.695 12.754 25.229 hybrid contribution 0.597 0.065 0.466 0.760 sum -19.358 8.760 13.220 25.025 Atomic orbital electron populations 1.24206 0.93701 1.04266 0.96675 1.23433 0.94177 0.88074 1.06509 1.98407 1.77914 1.31815 1.96868 1.20378 0.95526 0.92038 0.88548 1.46084 1.49623 1.23046 1.20126 1.21099 0.78493 0.80695 0.89335 1.90705 1.63433 1.40181 1.47079 1.21758 0.99672 1.01767 0.94106 1.19392 0.97184 0.94549 0.93810 1.19340 0.95721 1.15661 0.97419 1.21941 0.96320 1.00904 0.92221 1.20024 0.90390 0.99801 1.02088 1.77274 0.94431 1.18111 1.22314 1.49243 1.12336 1.40935 1.07933 1.19650 0.74606 0.97551 0.94279 1.21305 0.97460 1.03057 1.35508 0.91808 1.24931 0.97842 0.96570 0.94482 1.69916 1.19629 1.28788 1.34673 0.86352 0.79499 0.81917 0.78915 1.20307 1.20873 1.19658 1.20781 0.95048 1.00126 0.87790 1.20352 0.97967 0.99900 0.96225 0.85483 0.86487 0.89362 0.89843 0.76211 0.88917 0.88874 0.91257 0.91369 0.91621 0.91587 0.91238 0.93088 0.93099 0.92265 0.90440 0.90940 0.91076 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.63 14.05 28.97 0.41 -0.22 16 2 C -0.10 -0.57 5.87 -36.07 -0.21 -0.78 16 3 Cl -0.08 -0.56 28.99 -51.86 -1.50 -2.06 16 4 C 0.16 1.16 5.99 -5.19 -0.03 1.13 16 5 N -0.74 -6.06 5.55 -61.47 -0.34 -6.40 16 6 C 0.52 5.79 7.83 -10.98 -0.09 5.71 16 7 O -0.54 -7.98 15.98 5.56 0.09 -7.90 16 8 C -0.13 -1.47 5.68 -27.89 -0.16 -1.63 16 9 C -0.01 -0.15 4.41 -27.88 -0.12 -0.27 16 10 C -0.27 -4.77 5.35 -105.05 -0.56 -5.33 16 11 C 0.05 0.95 7.22 -82.41 -0.59 0.36 16 12 C -0.06 -0.91 10.26 36.01 0.37 -0.54 16 13 N -0.30 -6.83 12.58 33.67 0.42 -6.40 16 14 N -0.32 -7.58 3.60 -58.32 -0.21 -7.79 16 15 C 0.26 6.60 6.00 -5.20 -0.03 6.57 16 16 C -0.53 -14.83 9.39 -34.44 -0.32 -15.15 16 17 H 0.06 1.83 7.81 -52.49 -0.41 1.42 16 18 C 0.07 1.78 5.46 -17.82 -0.10 1.69 16 19 N -0.89 -25.18 13.29 55.43 0.74 -24.45 16 20 Si 0.91 21.28 29.54 -169.99 -5.02 16.26 16 21 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 22 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 23 H -0.27 -6.35 7.11 56.52 0.40 -5.94 16 24 C 0.09 1.86 6.93 -82.26 -0.57 1.29 16 25 C -0.09 -1.41 9.72 36.00 0.35 -1.06 16 26 H 0.13 0.36 7.84 -52.48 -0.41 -0.05 16 27 H 0.12 0.40 8.06 -52.49 -0.42 -0.02 16 28 H 0.09 0.61 7.80 -51.93 -0.40 0.21 16 29 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 30 H 0.40 2.63 8.46 -40.82 -0.35 2.29 16 31 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 32 H 0.09 0.92 8.14 -51.92 -0.42 0.50 16 33 H 0.07 0.98 7.20 -51.93 -0.37 0.61 16 34 H 0.07 1.00 7.73 -51.93 -0.40 0.60 16 35 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 36 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 37 H 0.07 0.85 7.25 -51.93 -0.38 0.47 16 38 H 0.05 1.41 8.14 -51.93 -0.42 0.98 16 39 H 0.05 1.29 7.05 -51.93 -0.37 0.92 16 40 H 0.27 7.12 8.31 -40.82 -0.34 6.78 16 41 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16 42 H 0.07 1.22 7.08 -51.93 -0.37 0.85 16 43 H 0.07 0.94 7.77 -51.93 -0.40 0.53 16 LS Contribution 384.34 15.07 5.79 5.79 Total: -1.00 -32.61 384.34 -8.08 -40.68 By element: Atomic # 1 Polarization: 6.89 SS G_CDS: -6.38 Total: 0.51 kcal Atomic # 6 Polarization: -6.57 SS G_CDS: -1.66 Total: -8.23 kcal Atomic # 7 Polarization: -45.65 SS G_CDS: 0.61 Total: -45.05 kcal Atomic # 8 Polarization: -7.98 SS G_CDS: 0.09 Total: -7.90 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.26 kcal Atomic # 17 Polarization: -0.56 SS G_CDS: -1.50 Total: -2.06 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -32.61 -8.08 -40.68 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000736246602.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.443 kcal (2) G-P(sol) polarization free energy of solvation -32.607 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.835 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.075 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.683 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.760 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds