Wall clock time and date at job start Tue Mar 31 2020 14:16:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31157 * 1 3 3 Cl 1.73595 * 120.00190 * 2 1 4 4 C 1.50703 * 119.99914 * 179.97438 * 2 1 3 5 5 N 1.46496 * 109.46871 * 115.00460 * 4 2 1 6 6 C 1.34784 * 119.99741 * 180.02562 * 5 4 2 7 7 O 1.21281 * 120.00093 * 359.97438 * 6 5 4 8 8 C 1.50696 * 119.99865 * 179.97438 * 6 5 4 9 9 C 1.53000 * 109.47110 * 179.97438 * 8 6 5 10 10 C 1.50706 * 109.47116 * 179.97438 * 9 8 6 11 11 C 1.39862 * 126.04094 * 269.68901 * 10 9 8 12 12 C 1.50702 * 125.90180 * 0.02562 * 11 10 9 13 13 N 1.30842 * 108.19992 * 179.81747 * 11 10 9 14 14 N 1.40084 * 108.20663 * 0.44091 * 13 11 10 15 15 C 1.46495 * 126.04013 * 179.73793 * 14 13 11 16 16 C 1.50699 * 109.47131 * 269.98016 * 15 14 13 17 17 H 1.08002 * 119.99767 * 359.97438 * 16 15 14 18 18 C 1.37881 * 120.00208 * 179.97438 * 16 15 14 19 19 N 1.31511 * 119.99755 * 359.97438 * 18 16 15 20 20 Si 1.86795 * 120.00053 * 179.97438 * 18 16 15 21 21 H 1.48495 * 109.47257 * 89.99976 * 20 18 16 22 22 H 1.48501 * 109.46940 * 210.00122 * 20 18 16 23 23 H 1.48499 * 109.47462 * 329.99632 * 20 18 16 24 24 C 1.34950 * 107.92381 * 359.71898 * 14 13 11 25 25 C 1.50694 * 126.12576 * 179.97438 * 24 14 13 26 26 H 1.08006 * 120.00059 * 180.02562 * 1 2 3 27 27 H 1.08000 * 119.99972 * 0.02562 * 1 2 3 28 28 H 1.09000 * 109.47308 * 354.99779 * 4 2 1 29 29 H 1.09000 * 109.46976 * 234.99924 * 4 2 1 30 30 H 0.96998 * 120.00681 * 359.97438 * 5 4 2 31 31 H 1.09000 * 109.47543 * 59.99570 * 8 6 5 32 32 H 1.09008 * 109.47338 * 300.00084 * 8 6 5 33 33 H 1.09000 * 109.46884 * 60.00335 * 9 8 6 34 34 H 1.09000 * 109.46955 * 299.99651 * 9 8 6 35 35 H 1.08998 * 109.47393 * 89.99256 * 12 11 10 36 36 H 1.09001 * 109.46747 * 209.99996 * 12 11 10 37 37 H 1.08998 * 109.46776 * 329.99757 * 12 11 10 38 38 H 1.09001 * 109.47188 * 29.97306 * 15 14 13 39 39 H 1.08997 * 109.47530 * 149.97532 * 15 14 13 40 40 H 0.96999 * 120.00262 * 179.97438 * 19 18 16 41 41 H 1.09000 * 109.47170 * 270.02464 * 25 24 14 42 42 H 1.09004 * 109.47112 * 30.02444 * 25 24 14 43 43 H 1.09003 * 109.46820 * 150.02019 * 25 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3116 0.0000 0.0000 3 17 2.1796 1.5033 0.0000 4 6 2.0651 -1.3051 0.0006 5 7 2.8148 -1.4366 -1.2511 6 6 3.5671 -2.5326 -1.4740 7 8 3.6237 -3.4095 -0.6382 8 6 4.3379 -2.6681 -2.7618 9 6 5.1030 -3.9931 -2.7612 10 6 5.8733 -4.1290 -4.0494 11 6 5.4081 -4.7215 -5.2278 12 6 4.0470 -5.3357 -5.4305 13 7 6.3573 -4.6466 -6.1252 14 7 7.4618 -4.0120 -5.5422 15 6 8.7407 -3.7314 -6.1993 16 6 9.6765 -4.8948 -5.9946 17 1 9.3512 -5.7568 -5.4311 18 6 10.9479 -4.8588 -6.5269 19 7 11.3438 -3.8094 -7.2135 20 14 12.1081 -6.3005 -6.2726 21 1 11.9396 -7.2731 -7.3820 22 1 13.5097 -5.8104 -6.2525 23 1 11.7973 -6.9642 -4.9810 24 6 7.1394 -3.7044 -4.2684 25 6 8.0300 -3.0126 -3.2688 26 1 -0.5400 -0.9354 0.0004 27 1 -0.5400 0.9353 -0.0004 28 1 1.3602 -2.1316 0.0906 29 1 2.7572 -1.3247 0.8424 30 1 2.7693 -0.7355 -1.9198 31 1 5.0430 -1.8418 -2.8520 32 1 3.6455 -2.6483 -3.6036 33 1 4.3981 -4.8196 -2.6710 34 1 5.7954 -4.0124 -1.9196 35 1 3.3554 -4.5751 -5.7928 36 1 4.1170 -6.1411 -6.1617 37 1 3.6840 -5.7352 -4.4836 38 1 8.5757 -3.5812 -7.2662 39 1 9.1804 -2.8315 -5.7694 40 1 12.2383 -3.7838 -7.5877 41 1 8.6040 -3.7572 -2.7172 42 1 8.7121 -2.3427 -3.7924 43 1 7.4180 -2.4375 -2.5739 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000736246602.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:16:03 Heat of formation + Delta-G solvation = 2.414783 kcal Electronic energy + Delta-G solvation = -24389.731767 eV Core-core repulsion = 20689.173478 eV Total energy + Delta-G solvation = -3700.558289 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 325.130 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.14145 -40.68209 -37.99555 -36.29117 -36.02527 -34.83247 -34.18627 -33.53995 -31.71091 -30.49795 -28.58355 -27.61450 -27.08337 -25.05274 -23.70699 -21.61135 -20.91105 -20.29426 -20.12635 -18.82444 -18.13102 -17.44283 -17.19375 -16.78629 -16.25337 -16.17073 -15.84777 -15.32619 -14.82478 -14.70154 -14.56822 -14.31590 -14.19446 -13.98247 -13.66409 -13.55792 -13.35623 -13.25113 -13.17697 -13.04666 -12.84379 -12.75629 -12.66062 -12.62301 -12.56922 -12.22393 -11.84116 -11.82416 -11.70629 -11.15158 -10.93887 -10.75868 -10.25165 -10.06075 -9.82837 -9.01283 -8.35236 -6.52950 0.80190 1.18612 1.26086 1.35249 1.36471 1.47686 1.70041 1.91209 1.95726 2.32757 2.41387 2.94113 3.51336 3.81785 3.92996 3.98616 4.24189 4.28683 4.32707 4.38140 4.57313 4.60957 4.66365 4.73403 4.73787 4.77964 4.86644 4.88592 4.92309 4.98589 5.05125 5.15508 5.15579 5.19138 5.32301 5.44355 5.46347 5.50506 5.57450 5.80089 6.07338 6.32444 6.53099 6.62323 7.12926 7.18375 7.27086 8.70720 Molecular weight = 325.13amu Principal moments of inertia in cm(-1) A = 0.020500 B = 0.002230 C = 0.002136 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1365.521843 B =12551.612422 C =13105.103705 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.113 4.113 3 Cl -0.094 7.094 4 C 0.160 3.840 5 N -0.722 5.722 6 C 0.521 3.479 7 O -0.578 6.578 8 C -0.126 4.126 9 C -0.004 4.004 10 C -0.257 4.257 11 C 0.054 3.946 12 C -0.063 4.063 13 N -0.351 5.351 14 N -0.356 5.356 15 C 0.275 3.725 16 C -0.552 4.552 17 H 0.047 0.953 18 C 0.021 3.979 19 N -0.918 5.918 20 Si 0.971 3.029 21 H -0.274 1.274 22 H -0.269 1.269 23 H -0.270 1.270 24 C 0.077 3.923 25 C -0.083 4.083 26 H 0.145 0.855 27 H 0.127 0.873 28 H 0.095 0.905 29 H 0.070 0.930 30 H 0.413 0.587 31 H 0.102 0.898 32 H 0.110 0.890 33 H 0.073 0.927 34 H 0.063 0.937 35 H 0.092 0.908 36 H 0.063 0.937 37 H 0.092 0.908 38 H 0.019 0.981 39 H 0.047 0.953 40 H 0.274 0.726 41 H 0.075 0.925 42 H 0.062 0.938 43 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.615 9.459 14.887 28.680 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.139 4.139 3 Cl -0.066 7.066 4 C 0.037 3.963 5 N -0.375 5.375 6 C 0.309 3.691 7 O -0.457 6.457 8 C -0.166 4.166 9 C -0.043 4.043 10 C -0.269 4.269 11 C -0.110 4.110 12 C -0.121 4.121 13 N -0.175 5.175 14 N -0.136 5.136 15 C 0.156 3.844 16 C -0.590 4.590 17 H 0.065 0.935 18 C -0.180 4.180 19 N -0.556 5.556 20 Si 0.795 3.205 21 H -0.200 1.200 22 H -0.194 1.194 23 H -0.195 1.195 24 C -0.052 4.052 25 C -0.141 4.141 26 H 0.163 0.837 27 H 0.145 0.855 28 H 0.113 0.887 29 H 0.089 0.911 30 H 0.250 0.750 31 H 0.120 0.880 32 H 0.129 0.871 33 H 0.091 0.909 34 H 0.081 0.919 35 H 0.110 0.890 36 H 0.082 0.918 37 H 0.111 0.889 38 H 0.037 0.963 39 H 0.064 0.936 40 H 0.083 0.917 41 H 0.094 0.906 42 H 0.081 0.919 43 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -21.850 8.818 14.093 27.455 hybrid contribution 0.997 0.068 0.090 1.004 sum -20.853 8.886 14.184 26.739 Atomic orbital electron populations 1.24490 0.93030 1.05612 0.93305 1.23274 0.94424 0.86854 1.09373 1.98403 1.78425 1.32658 1.97111 1.20393 0.95366 0.93125 0.87453 1.45979 1.48521 1.22281 1.20672 1.20997 0.78496 0.80821 0.88785 1.90698 1.65002 1.41758 1.48253 1.21639 0.99962 1.00155 0.94825 1.19369 0.97000 0.96585 0.91358 1.19722 0.94989 1.13838 0.98322 1.22801 0.97173 0.99303 0.91768 1.20217 0.88083 1.00316 1.03491 1.77209 0.95448 1.20278 1.24525 1.48998 1.11991 1.43323 1.09302 1.19116 0.75894 0.96798 0.92600 1.21428 0.98498 1.03214 1.35899 0.93500 1.25753 0.99191 0.99166 0.93878 1.69998 1.20299 1.30345 1.35001 0.85359 0.77831 0.78590 0.78743 1.19988 1.19365 1.19452 1.21461 0.96421 1.00300 0.87046 1.20438 0.97963 0.99762 0.95929 0.83702 0.85467 0.88698 0.91135 0.75034 0.87969 0.87139 0.90871 0.91875 0.88989 0.91771 0.88915 0.96310 0.93561 0.91729 0.90617 0.91905 0.87537 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.68 14.05 67.62 0.95 0.27 16 2 C -0.11 -1.10 5.87 25.49 0.15 -0.95 16 3 Cl -0.09 -1.22 28.99 -2.72 -0.08 -1.29 16 4 C 0.16 2.05 5.99 85.63 0.51 2.56 16 5 N -0.72 -10.28 5.55 -466.79 -2.59 -12.87 16 6 C 0.52 10.55 7.83 87.65 0.69 11.23 16 7 O -0.58 -16.24 15.98 -3.03 -0.05 -16.29 16 8 C -0.13 -2.44 5.68 29.85 0.17 -2.28 16 9 C 0.00 -0.11 4.41 29.85 0.13 0.02 16 10 C -0.26 -8.82 5.35 -20.14 -0.11 -8.93 16 11 C 0.05 2.01 7.22 43.10 0.31 2.32 16 12 C -0.06 -1.62 10.26 71.24 0.73 -0.89 16 13 N -0.35 -16.48 12.58 -47.38 -0.60 -17.08 16 14 N -0.36 -17.18 3.60 -338.42 -1.22 -18.40 16 15 C 0.28 14.86 6.00 85.63 0.51 15.37 16 16 C -0.55 -31.68 9.39 25.60 0.24 -31.44 16 17 H 0.05 2.79 7.81 -2.91 -0.02 2.76 16 18 C 0.02 1.17 5.46 84.66 0.46 1.64 16 19 N -0.92 -52.74 13.29 21.45 0.28 -52.46 16 20 Si 0.97 43.92 29.54 68.60 2.03 45.94 16 21 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 22 H -0.27 -11.48 7.11 99.48 0.71 -10.78 16 23 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 24 C 0.08 3.07 6.93 41.40 0.29 3.36 16 25 C -0.08 -2.70 9.72 71.23 0.69 -2.00 16 26 H 0.15 0.29 7.84 -2.91 -0.02 0.27 16 27 H 0.13 0.48 8.06 -2.91 -0.02 0.45 16 28 H 0.10 1.11 7.80 -2.39 -0.02 1.09 16 29 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 30 H 0.41 4.35 8.46 -92.71 -0.78 3.56 16 31 H 0.10 1.83 8.14 -2.39 -0.02 1.81 16 32 H 0.11 1.80 8.14 -2.38 -0.02 1.78 16 33 H 0.07 1.89 7.20 -2.39 -0.02 1.87 16 34 H 0.06 1.74 7.73 -2.39 -0.02 1.73 16 35 H 0.09 1.92 8.14 -2.39 -0.02 1.90 16 36 H 0.06 1.69 8.14 -2.39 -0.02 1.68 16 37 H 0.09 1.97 7.25 -2.39 -0.02 1.95 16 38 H 0.02 1.11 8.14 -2.39 -0.02 1.09 16 39 H 0.05 2.48 7.05 -2.39 -0.02 2.46 16 40 H 0.27 14.63 8.31 -92.71 -0.77 13.86 16 41 H 0.08 2.48 8.14 -2.39 -0.02 2.46 16 42 H 0.06 2.15 7.08 -2.39 -0.02 2.13 16 43 H 0.11 2.63 7.77 -2.39 -0.02 2.61 16 Total: -1.00 -72.98 384.34 3.75 -69.24 By element: Atomic # 1 Polarization: 12.69 SS G_CDS: 0.24 Total: 12.93 kcal Atomic # 6 Polarization: -15.45 SS G_CDS: 5.73 Total: -9.72 kcal Atomic # 7 Polarization: -96.69 SS G_CDS: -4.12 Total: -100.81 kcal Atomic # 8 Polarization: -16.24 SS G_CDS: -0.05 Total: -16.29 kcal Atomic # 14 Polarization: 43.92 SS G_CDS: 2.03 Total: 45.94 kcal Atomic # 17 Polarization: -1.22 SS G_CDS: -0.08 Total: -1.29 kcal Total: -72.98 3.75 -69.24 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000736246602.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.651 kcal (2) G-P(sol) polarization free energy of solvation -72.984 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.332 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.747 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.236 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.415 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds