Wall clock time and date at job start Tue Mar 31 2020 14:27:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.39021 * 120.00235 * 2 1 4 4 C 1.39086 * 119.63175 * 359.97438 * 3 2 1 5 5 C 1.39539 * 118.95940 * 179.72266 * 4 3 2 6 6 C 1.48163 * 120.87471 * 180.30068 * 5 4 3 7 7 O 1.21519 * 119.99897 * 359.97438 * 6 5 4 8 8 N 1.34775 * 120.00240 * 180.02562 * 6 5 4 9 9 C 1.46498 * 120.00380 * 179.97438 * 8 6 5 10 10 C 1.53001 * 109.47361 * 179.97438 * 9 8 6 11 11 C 1.53003 * 109.46765 * 299.99545 * 10 9 8 12 12 C 1.52998 * 109.47103 * 59.99889 * 10 9 8 13 13 C 1.52994 * 109.47021 * 179.97438 * 10 9 8 14 14 C 1.50700 * 109.47037 * 179.97438 * 13 10 9 15 15 H 1.07995 * 119.99876 * 0.02562 * 14 13 10 16 16 C 1.37876 * 119.99871 * 179.97438 * 14 13 10 17 17 N 1.31515 * 119.99821 * 180.02562 * 16 14 13 18 18 Si 1.86797 * 120.00483 * 0.02562 * 16 14 13 19 19 H 1.48510 * 109.46978 * 89.99788 * 18 16 14 20 20 H 1.48496 * 109.47528 * 209.99997 * 18 16 14 21 21 H 1.48501 * 109.46928 * 330.00602 * 18 16 14 22 22 C 1.39960 * 118.24872 * 0.27439 * 5 4 3 23 23 C 1.38130 * 119.16506 * 0.02562 * 22 5 4 24 24 Cl 1.73598 * 119.51611 * 179.97438 * 23 22 5 25 25 N 1.32007 * 120.96533 * 359.97313 * 23 22 5 26 26 H 1.08997 * 109.46959 * 300.00155 * 1 2 3 27 27 H 1.09002 * 109.47125 * 59.99997 * 1 2 3 28 28 H 1.08996 * 109.47277 * 180.02562 * 1 2 3 29 29 H 0.97003 * 119.99723 * 179.97438 * 2 1 3 30 30 H 1.08002 * 120.52392 * 0.02562 * 4 3 2 31 31 H 0.97001 * 119.99975 * 359.97438 * 8 6 5 32 32 H 1.09003 * 109.46774 * 299.99704 * 9 8 6 33 33 H 1.09000 * 109.46953 * 59.99684 * 9 8 6 34 34 H 1.09002 * 109.46651 * 60.00371 * 11 10 9 35 35 H 1.08997 * 109.46553 * 179.97438 * 11 10 9 36 36 H 1.08992 * 109.47221 * 300.00276 * 11 10 9 37 37 H 1.08995 * 109.47126 * 60.00026 * 12 10 9 38 38 H 1.08997 * 109.46994 * 180.02562 * 12 10 9 39 39 H 1.09001 * 109.46934 * 300.00010 * 12 10 9 40 40 H 1.08996 * 109.47696 * 299.99751 * 13 10 9 41 41 H 1.09000 * 109.47487 * 60.00111 * 13 10 9 42 42 H 0.97003 * 120.00164 * 180.02562 * 17 16 14 43 43 H 1.08003 * 120.41169 * 180.02562 * 22 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1602 1.2039 0.0000 4 6 1.4571 2.4040 -0.0005 5 6 2.1689 3.6041 0.0054 6 6 1.4631 4.9068 0.0117 7 8 0.2483 4.9396 0.0114 8 7 2.1682 6.0553 0.0169 9 6 1.4703 7.3434 0.0226 10 6 2.4956 8.4790 0.0283 11 6 3.3720 8.3684 1.2775 12 6 3.3732 8.3801 -1.2210 13 6 1.7666 9.8242 0.0336 14 6 2.7765 10.9427 0.0399 15 1 3.8326 10.7167 0.0397 16 6 2.3522 12.2545 0.0449 17 7 3.2335 13.2307 0.0499 18 14 0.5256 12.6455 0.0446 19 1 0.0400 12.7432 1.4447 20 1 0.2959 13.9376 -0.6503 21 1 -0.2114 11.5662 -0.6606 22 6 3.5673 3.5449 0.0057 23 6 4.1888 2.3113 -0.0003 24 17 5.9227 2.2272 -0.0006 25 7 3.4835 1.1955 -0.0058 26 1 -0.3633 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 1.9500 -0.8401 0.0004 30 1 0.3770 2.4070 -0.0005 31 1 3.1378 6.0292 0.0168 32 1 0.8455 7.4220 -0.8672 33 1 0.8453 7.4141 0.9128 34 1 3.8913 7.4101 1.2732 35 1 4.1027 9.1772 1.2814 36 1 2.7468 8.4389 2.1675 37 1 2.7488 8.4589 -2.1109 38 1 4.1039 9.1888 -1.2167 39 1 3.8925 7.4217 -1.2252 40 1 1.1425 9.9028 -0.8564 41 1 1.1411 9.8950 0.9235 42 1 2.9350 14.1536 0.0538 43 1 4.1529 4.4523 0.0106 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000807847422.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:27:30 Heat of formation + Delta-G solvation = -12.246870 kcal Electronic energy + Delta-G solvation = -24853.991324 eV Core-core repulsion = 21152.797258 eV Total energy + Delta-G solvation = -3701.194066 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 325.130 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.98467 -39.47373 -37.31015 -37.16081 -35.97850 -33.91497 -32.95005 -32.05639 -30.27748 -27.93789 -26.96691 -26.59835 -26.56820 -24.56518 -22.87763 -22.40285 -20.64369 -19.11596 -17.93349 -17.77201 -16.88760 -16.26470 -16.09792 -15.65511 -15.61594 -15.07369 -15.00786 -14.93556 -14.22436 -14.07044 -13.73207 -13.71662 -13.51940 -12.79487 -12.73704 -12.42936 -12.35947 -12.26452 -12.13322 -11.60342 -11.29263 -11.17225 -11.03667 -10.67037 -10.63998 -10.54398 -10.45496 -10.01491 -9.98591 -9.95209 -9.77105 -9.52721 -9.02559 -8.96678 -8.55303 -8.22358 -6.05875 -4.03400 0.39058 0.74135 1.41079 2.70308 2.72100 3.06609 3.30113 3.38420 3.41764 3.50246 4.28996 4.43950 4.47479 4.56192 4.65805 4.77195 4.85268 4.98960 5.22500 5.25480 5.26269 5.34823 5.46706 5.58017 5.70750 5.78993 6.04905 6.05084 6.11500 6.26131 6.35514 6.39877 6.56031 6.59940 6.84590 6.97355 6.98574 7.01808 7.16219 7.32905 7.45869 7.52291 7.76346 8.09827 8.50778 8.98127 9.56624 11.06802 Molecular weight = 325.13amu Principal moments of inertia in cm(-1) A = 0.018468 B = 0.002700 C = 0.002396 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1515.732362 B =10367.054902 C =11681.112369 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.092 3.908 2 N -0.725 5.725 3 C 0.418 3.582 4 C -0.177 4.177 5 C -0.028 4.028 6 C 0.554 3.446 7 O -0.531 6.531 8 N -0.708 5.708 9 C 0.124 3.876 10 C -0.063 4.063 11 C -0.130 4.130 12 C -0.130 4.130 13 C -0.002 4.002 14 C -0.511 4.511 15 H 0.079 0.921 16 C 0.067 3.933 17 N -0.903 5.903 18 Si 0.875 3.125 19 H -0.278 1.278 20 H -0.289 1.289 21 H -0.265 1.265 22 C -0.187 4.187 23 C 0.225 3.775 24 Cl -0.025 7.025 25 N -0.530 5.530 26 H 0.061 0.939 27 H 0.061 0.939 28 H 0.082 0.918 29 H 0.409 0.591 30 H 0.153 0.847 31 H 0.402 0.598 32 H 0.068 0.932 33 H 0.068 0.932 34 H 0.031 0.969 35 H 0.074 0.926 36 H 0.048 0.952 37 H 0.048 0.952 38 H 0.074 0.926 39 H 0.031 0.969 40 H 0.019 0.981 41 H 0.014 0.986 42 H 0.262 0.738 43 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.043 -26.634 -0.123 26.655 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 N -0.357 5.357 3 C 0.181 3.819 4 C -0.203 4.203 5 C -0.039 4.039 6 C 0.338 3.662 7 O -0.409 6.409 8 N -0.359 5.359 9 C 0.002 3.998 10 C -0.064 4.064 11 C -0.188 4.188 12 C -0.187 4.187 13 C -0.040 4.040 14 C -0.549 4.549 15 H 0.096 0.904 16 C -0.134 4.134 17 N -0.542 5.542 18 Si 0.702 3.298 19 H -0.204 1.204 20 H -0.215 1.215 21 H -0.190 1.190 22 C -0.211 4.211 23 C 0.060 3.940 24 Cl 0.004 6.996 25 N -0.251 5.251 26 H 0.079 0.921 27 H 0.079 0.921 28 H 0.101 0.899 29 H 0.244 0.756 30 H 0.170 0.830 31 H 0.239 0.761 32 H 0.087 0.913 33 H 0.086 0.914 34 H 0.050 0.950 35 H 0.093 0.907 36 H 0.067 0.933 37 H 0.067 0.933 38 H 0.093 0.907 39 H 0.050 0.950 40 H 0.037 0.963 41 H 0.032 0.968 42 H 0.072 0.928 43 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -1.552 -27.143 -0.134 27.188 hybrid contribution -0.497 0.734 0.027 0.887 sum -2.049 -26.409 -0.107 26.489 Atomic orbital electron populations 1.21713 0.78157 1.03307 1.02125 1.44262 1.06085 1.04865 1.80528 1.17914 0.86431 0.86783 0.90778 1.21581 1.02135 0.89948 1.06678 1.20129 0.92636 0.94232 0.96888 1.18021 0.87034 0.83490 0.77609 1.90779 1.13082 1.87364 1.49638 1.46107 1.10767 1.05950 1.73102 1.21758 0.95348 0.80578 1.02164 1.20710 0.94913 0.94872 0.95899 1.21795 0.99987 1.00193 0.96781 1.21791 0.99974 1.00198 0.96773 1.19591 0.96261 0.91525 0.96588 1.21066 0.94255 0.89089 1.50504 0.90350 1.24999 0.97224 0.96488 0.94723 1.69900 1.33643 0.99443 1.51243 0.86861 0.86553 0.77850 0.78512 1.20376 1.21515 1.18986 1.21678 0.93923 0.97893 1.07642 1.20998 0.87216 0.88690 0.97092 1.98426 1.06269 1.98596 1.96307 1.66147 1.06597 1.31506 1.20857 0.92061 0.92056 0.89899 0.75567 0.82982 0.76147 0.91347 0.91359 0.95024 0.90698 0.93284 0.93280 0.90698 0.95023 0.96300 0.96754 0.92776 0.83510 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.43 9.92 59.85 0.59 1.02 16 2 N -0.72 -5.17 5.89 -67.23 -0.40 -5.57 16 3 C 0.42 4.27 7.65 -155.07 -1.19 3.08 16 4 C -0.18 -1.93 8.89 -38.78 -0.34 -2.28 16 5 C -0.03 -0.33 5.90 -104.69 -0.62 -0.95 16 6 C 0.55 7.77 7.80 -12.19 -0.10 7.68 16 7 O -0.53 -9.07 16.44 5.35 0.09 -8.98 16 8 N -0.71 -9.45 4.92 -61.15 -0.30 -9.76 16 9 C 0.12 1.96 4.56 -4.04 -0.02 1.95 16 10 C -0.06 -1.11 0.54 -154.51 -0.08 -1.19 16 11 C -0.13 -2.16 8.05 37.16 0.30 -1.86 16 12 C -0.13 -2.16 8.05 37.16 0.30 -1.86 16 13 C 0.00 -0.04 3.11 -27.89 -0.09 -0.13 16 14 C -0.51 -13.38 8.21 -34.44 -0.28 -13.67 16 15 H 0.08 2.17 5.92 -52.49 -0.31 1.86 16 16 C 0.07 1.86 5.47 -17.82 -0.10 1.76 16 17 N -0.90 -26.90 13.96 55.43 0.77 -26.12 16 18 Si 0.87 21.17 27.47 -169.99 -4.67 16.50 16 19 H -0.28 -6.67 7.11 56.52 0.40 -6.26 16 20 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 21 H -0.27 -6.19 6.54 56.52 0.37 -5.82 16 22 C -0.19 -1.97 9.37 -38.98 -0.37 -2.34 16 23 C 0.22 2.47 7.26 -17.52 -0.13 2.35 16 24 Cl -0.02 -0.24 29.10 -51.86 -1.51 -1.75 16 25 N -0.53 -6.02 10.34 -9.60 -0.10 -6.12 16 26 H 0.06 0.30 7.93 -51.93 -0.41 -0.11 16 27 H 0.06 0.30 7.92 -51.93 -0.41 -0.11 16 28 H 0.08 0.19 8.14 -51.93 -0.42 -0.24 16 29 H 0.41 2.41 8.95 -40.82 -0.37 2.04 16 30 H 0.15 1.56 6.38 -52.49 -0.33 1.22 16 31 H 0.40 4.58 4.30 -40.82 -0.18 4.40 16 32 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 33 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 34 H 0.03 0.42 6.86 -51.93 -0.36 0.06 16 35 H 0.07 1.41 6.62 -51.93 -0.34 1.06 16 36 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 37 H 0.05 0.82 8.14 -51.93 -0.42 0.39 16 38 H 0.07 1.41 6.62 -51.93 -0.34 1.06 16 39 H 0.03 0.42 6.86 -51.93 -0.36 0.06 16 40 H 0.02 0.43 7.20 -51.93 -0.37 0.05 16 41 H 0.01 0.32 7.57 -51.93 -0.39 -0.08 16 42 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 43 H 0.15 1.28 6.53 -52.48 -0.34 0.94 16 LS Contribution 362.31 15.07 5.46 5.46 Total: -1.00 -31.43 362.31 -8.56 -40.00 By element: Atomic # 1 Polarization: 8.57 SS G_CDS: -5.80 Total: 2.77 kcal Atomic # 6 Polarization: -4.32 SS G_CDS: -2.11 Total: -6.43 kcal Atomic # 7 Polarization: -47.55 SS G_CDS: -0.02 Total: -47.57 kcal Atomic # 8 Polarization: -9.07 SS G_CDS: 0.09 Total: -8.98 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -4.67 Total: 16.50 kcal Atomic # 17 Polarization: -0.24 SS G_CDS: -1.51 Total: -1.75 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -31.43 -8.56 -40.00 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000807847422.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.750 kcal (2) G-P(sol) polarization free energy of solvation -31.432 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.682 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.565 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.997 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.247 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds