Wall clock time and date at job start Tue Mar 31 2020 14:27:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.39021 * 120.00235 * 2 1 4 4 C 1.39086 * 119.63175 * 359.97438 * 3 2 1 5 5 C 1.39539 * 118.95940 * 179.72266 * 4 3 2 6 6 C 1.48163 * 120.87471 * 180.30068 * 5 4 3 7 7 O 1.21519 * 119.99897 * 359.97438 * 6 5 4 8 8 N 1.34775 * 120.00240 * 180.02562 * 6 5 4 9 9 C 1.46498 * 120.00380 * 179.97438 * 8 6 5 10 10 C 1.53001 * 109.47361 * 179.97438 * 9 8 6 11 11 C 1.53003 * 109.46765 * 299.99545 * 10 9 8 12 12 C 1.52998 * 109.47103 * 59.99889 * 10 9 8 13 13 C 1.52994 * 109.47021 * 179.97438 * 10 9 8 14 14 C 1.50700 * 109.47037 * 179.97438 * 13 10 9 15 15 H 1.07995 * 119.99876 * 0.02562 * 14 13 10 16 16 C 1.37876 * 119.99871 * 179.97438 * 14 13 10 17 17 N 1.31515 * 119.99821 * 180.02562 * 16 14 13 18 18 Si 1.86797 * 120.00483 * 0.02562 * 16 14 13 19 19 H 1.48510 * 109.46978 * 89.99788 * 18 16 14 20 20 H 1.48496 * 109.47528 * 209.99997 * 18 16 14 21 21 H 1.48501 * 109.46928 * 330.00602 * 18 16 14 22 22 C 1.39960 * 118.24872 * 0.27439 * 5 4 3 23 23 C 1.38130 * 119.16506 * 0.02562 * 22 5 4 24 24 Cl 1.73598 * 119.51611 * 179.97438 * 23 22 5 25 25 N 1.32007 * 120.96533 * 359.97313 * 23 22 5 26 26 H 1.08997 * 109.46959 * 300.00155 * 1 2 3 27 27 H 1.09002 * 109.47125 * 59.99997 * 1 2 3 28 28 H 1.08996 * 109.47277 * 180.02562 * 1 2 3 29 29 H 0.97003 * 119.99723 * 179.97438 * 2 1 3 30 30 H 1.08002 * 120.52392 * 0.02562 * 4 3 2 31 31 H 0.97001 * 119.99975 * 359.97438 * 8 6 5 32 32 H 1.09003 * 109.46774 * 299.99704 * 9 8 6 33 33 H 1.09000 * 109.46953 * 59.99684 * 9 8 6 34 34 H 1.09002 * 109.46651 * 60.00371 * 11 10 9 35 35 H 1.08997 * 109.46553 * 179.97438 * 11 10 9 36 36 H 1.08992 * 109.47221 * 300.00276 * 11 10 9 37 37 H 1.08995 * 109.47126 * 60.00026 * 12 10 9 38 38 H 1.08997 * 109.46994 * 180.02562 * 12 10 9 39 39 H 1.09001 * 109.46934 * 300.00010 * 12 10 9 40 40 H 1.08996 * 109.47696 * 299.99751 * 13 10 9 41 41 H 1.09000 * 109.47487 * 60.00111 * 13 10 9 42 42 H 0.97003 * 120.00164 * 180.02562 * 17 16 14 43 43 H 1.08003 * 120.41169 * 180.02562 * 22 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1602 1.2039 0.0000 4 6 1.4571 2.4040 -0.0005 5 6 2.1689 3.6041 0.0054 6 6 1.4631 4.9068 0.0117 7 8 0.2483 4.9396 0.0114 8 7 2.1682 6.0553 0.0169 9 6 1.4703 7.3434 0.0226 10 6 2.4956 8.4790 0.0283 11 6 3.3720 8.3684 1.2775 12 6 3.3732 8.3801 -1.2210 13 6 1.7666 9.8242 0.0336 14 6 2.7765 10.9427 0.0399 15 1 3.8326 10.7167 0.0397 16 6 2.3522 12.2545 0.0449 17 7 3.2335 13.2307 0.0499 18 14 0.5256 12.6455 0.0446 19 1 0.0400 12.7432 1.4447 20 1 0.2959 13.9376 -0.6503 21 1 -0.2114 11.5662 -0.6606 22 6 3.5673 3.5449 0.0057 23 6 4.1888 2.3113 -0.0003 24 17 5.9227 2.2272 -0.0006 25 7 3.4835 1.1955 -0.0058 26 1 -0.3633 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 1.9500 -0.8401 0.0004 30 1 0.3770 2.4070 -0.0005 31 1 3.1378 6.0292 0.0168 32 1 0.8455 7.4220 -0.8672 33 1 0.8453 7.4141 0.9128 34 1 3.8913 7.4101 1.2732 35 1 4.1027 9.1772 1.2814 36 1 2.7468 8.4389 2.1675 37 1 2.7488 8.4589 -2.1109 38 1 4.1039 9.1888 -1.2167 39 1 3.8925 7.4217 -1.2252 40 1 1.1425 9.9028 -0.8564 41 1 1.1411 9.8950 0.9235 42 1 2.9350 14.1536 0.0538 43 1 4.1529 4.4523 0.0106 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000807847422.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:27:30 Heat of formation + Delta-G solvation = -32.713809 kcal Electronic energy + Delta-G solvation = -24854.878837 eV Core-core repulsion = 21152.797258 eV Total energy + Delta-G solvation = -3702.081579 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 325.130 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.86420 -40.54641 -38.69918 -37.91215 -36.65049 -35.31129 -34.23790 -33.56855 -31.00472 -29.75554 -28.05337 -27.96692 -27.24665 -25.71122 -24.08583 -23.61667 -21.72013 -20.25343 -19.06982 -18.84834 -18.70002 -17.19694 -16.98542 -16.65154 -16.61528 -16.17916 -15.97983 -15.81286 -15.58079 -15.22703 -15.17669 -14.85628 -14.56427 -14.21033 -14.14817 -13.88702 -13.29967 -12.93146 -12.92349 -12.84822 -12.82415 -12.59949 -12.37161 -12.28049 -12.14750 -11.77029 -11.54425 -11.49045 -11.44425 -11.17279 -10.90951 -10.78288 -10.73215 -10.68352 -10.14336 -8.88795 -8.20180 -6.20204 -0.48797 -0.04279 0.63409 1.37833 1.40743 1.50341 1.72452 1.93296 2.15599 2.41053 2.63648 3.15553 3.36094 3.69281 3.82070 3.86324 3.94750 4.06987 4.07110 4.17484 4.38665 4.45972 4.63009 4.64561 4.72030 4.78286 4.88289 4.95910 4.96609 5.01793 5.04707 5.12259 5.28833 5.33783 5.43588 5.44313 5.58076 5.71452 5.76321 5.78766 6.35038 6.38616 6.41739 6.84433 6.87168 7.02580 7.42545 8.95417 Molecular weight = 325.13amu Principal moments of inertia in cm(-1) A = 0.018468 B = 0.002700 C = 0.002396 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1515.732362 B =10367.054902 C =11681.112369 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.086 3.914 2 N -0.716 5.716 3 C 0.414 3.586 4 C -0.180 4.180 5 C -0.036 4.036 6 C 0.559 3.441 7 O -0.564 6.564 8 N -0.698 5.698 9 C 0.136 3.864 10 C -0.058 4.058 11 C -0.127 4.127 12 C -0.127 4.127 13 C -0.004 4.004 14 C -0.500 4.500 15 H 0.052 0.948 16 C 0.004 3.996 17 N -0.952 5.952 18 Si 0.934 3.066 19 H -0.272 1.272 20 H -0.291 1.291 21 H -0.249 1.249 22 C -0.185 4.185 23 C 0.217 3.783 24 Cl -0.018 7.018 25 N -0.544 5.544 26 H 0.060 0.940 27 H 0.060 0.940 28 H 0.111 0.889 29 H 0.416 0.584 30 H 0.156 0.844 31 H 0.413 0.587 32 H 0.063 0.937 33 H 0.064 0.936 34 H 0.068 0.932 35 H 0.046 0.954 36 H 0.046 0.954 37 H 0.046 0.954 38 H 0.046 0.954 39 H 0.068 0.932 40 H 0.017 0.983 41 H 0.015 0.985 42 H 0.262 0.738 43 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.908 -29.185 -0.122 29.248 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 N -0.348 5.348 3 C 0.176 3.824 4 C -0.207 4.207 5 C -0.047 4.047 6 C 0.345 3.655 7 O -0.444 6.444 8 N -0.350 5.350 9 C 0.013 3.987 10 C -0.059 4.059 11 C -0.184 4.184 12 C -0.184 4.184 13 C -0.042 4.042 14 C -0.538 4.538 15 H 0.071 0.929 16 C -0.192 4.192 17 N -0.594 5.594 18 Si 0.759 3.241 19 H -0.198 1.198 20 H -0.217 1.217 21 H -0.173 1.173 22 C -0.210 4.210 23 C 0.052 3.948 24 Cl 0.011 6.989 25 N -0.265 5.265 26 H 0.079 0.921 27 H 0.079 0.921 28 H 0.129 0.871 29 H 0.252 0.748 30 H 0.173 0.827 31 H 0.252 0.748 32 H 0.082 0.918 33 H 0.082 0.918 34 H 0.087 0.913 35 H 0.065 0.935 36 H 0.066 0.934 37 H 0.065 0.935 38 H 0.065 0.935 39 H 0.087 0.913 40 H 0.035 0.965 41 H 0.034 0.966 42 H 0.071 0.929 43 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -2.412 -29.744 -0.132 29.842 hybrid contribution -0.171 1.405 0.027 1.416 sum -2.583 -28.338 -0.105 28.456 Atomic orbital electron populations 1.21921 0.76619 1.05217 1.02003 1.44449 1.07044 1.04206 1.79111 1.18086 0.86252 0.87623 0.90411 1.21666 1.02390 0.90055 1.06557 1.19923 0.93130 0.93240 0.98425 1.18252 0.86622 0.84091 0.76540 1.90764 1.14585 1.87855 1.51186 1.45906 1.11219 1.05017 1.72906 1.21426 0.94585 0.80919 1.01809 1.20565 0.95199 0.93235 0.96879 1.21735 0.99335 1.01142 0.96183 1.21732 0.99322 1.01156 0.96174 1.19572 0.95538 0.92743 0.96336 1.21375 0.94150 0.90214 1.48100 0.92950 1.25840 1.01513 0.96676 0.95153 1.70046 1.35776 0.99816 1.53779 0.85899 0.81551 0.77820 0.78815 1.19764 1.21720 1.17299 1.21766 0.93424 0.98493 1.07272 1.21147 0.87648 0.88859 0.97130 1.98427 1.05630 1.98591 1.96265 1.66213 1.07087 1.31803 1.21414 0.92144 0.92140 0.87069 0.74784 0.82659 0.74835 0.91843 0.91782 0.91340 0.93509 0.93438 0.93473 0.93501 0.91338 0.96490 0.96649 0.92935 0.81789 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.61 9.92 127.77 1.27 1.87 16 2 N -0.72 -8.72 5.89 -366.62 -2.16 -10.88 16 3 C 0.41 7.72 7.65 133.06 1.02 8.74 16 4 C -0.18 -3.64 8.89 22.79 0.20 -3.44 16 5 C -0.04 -0.79 5.90 -19.91 -0.12 -0.90 16 6 C 0.56 14.62 7.80 86.88 0.68 15.30 16 7 O -0.56 -18.52 16.44 -3.78 -0.06 -18.58 16 8 N -0.70 -16.91 4.92 -465.66 -2.29 -19.20 16 9 C 0.14 4.04 4.56 86.38 0.39 4.43 16 10 C -0.06 -1.96 0.54 -52.18 -0.03 -1.99 16 11 C -0.13 -4.02 8.05 71.98 0.58 -3.44 16 12 C -0.13 -4.02 8.05 71.98 0.58 -3.44 16 13 C 0.00 -0.17 3.11 29.85 0.09 -0.08 16 14 C -0.50 -26.58 8.21 25.60 0.21 -26.37 16 15 H 0.05 3.00 5.92 -2.91 -0.02 2.99 16 16 C 0.00 0.24 5.47 84.65 0.46 0.70 16 17 N -0.95 -58.29 13.96 21.45 0.30 -57.99 16 18 Si 0.93 43.71 27.47 68.60 1.88 45.60 16 19 H -0.27 -12.41 7.11 99.48 0.71 -11.70 16 20 H -0.29 -13.62 7.11 99.48 0.71 -12.91 16 21 H -0.25 -10.91 6.54 99.48 0.65 -10.26 16 22 C -0.19 -3.48 9.37 22.66 0.21 -3.27 16 23 C 0.22 4.35 7.26 84.64 0.61 4.96 16 24 Cl -0.02 -0.32 29.10 -2.72 -0.08 -0.40 16 25 N -0.54 -11.37 10.34 -184.27 -1.91 -13.28 16 26 H 0.06 0.47 7.93 -2.39 -0.02 0.45 16 27 H 0.06 0.47 7.92 -2.39 -0.02 0.45 16 28 H 0.11 0.16 8.14 -2.39 -0.02 0.15 16 29 H 0.42 3.98 8.95 -92.71 -0.83 3.15 16 30 H 0.16 2.97 6.38 -2.91 -0.02 2.95 16 31 H 0.41 8.04 4.30 -92.71 -0.40 7.64 16 32 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 33 H 0.06 1.99 8.14 -2.39 -0.02 1.97 16 34 H 0.07 1.64 6.86 -2.39 -0.02 1.62 16 35 H 0.05 1.75 6.62 -2.39 -0.02 1.73 16 36 H 0.05 1.51 8.14 -2.39 -0.02 1.49 16 37 H 0.05 1.50 8.14 -2.39 -0.02 1.48 16 38 H 0.05 1.75 6.62 -2.39 -0.02 1.74 16 39 H 0.07 1.64 6.86 -2.39 -0.02 1.63 16 40 H 0.02 0.74 7.20 -2.39 -0.02 0.72 16 41 H 0.02 0.66 7.57 -2.39 -0.02 0.64 16 42 H 0.26 15.18 8.31 -92.71 -0.77 14.41 16 43 H 0.16 2.36 6.53 -2.91 -0.02 2.34 16 Total: -1.00 -68.66 362.31 1.63 -67.03 By element: Atomic # 1 Polarization: 14.86 SS G_CDS: -0.22 Total: 14.63 kcal Atomic # 6 Polarization: -13.09 SS G_CDS: 6.17 Total: -6.93 kcal Atomic # 7 Polarization: -95.30 SS G_CDS: -6.05 Total: -101.35 kcal Atomic # 8 Polarization: -18.52 SS G_CDS: -0.06 Total: -18.58 kcal Atomic # 14 Polarization: 43.71 SS G_CDS: 1.88 Total: 45.60 kcal Atomic # 17 Polarization: -0.32 SS G_CDS: -0.08 Total: -0.40 kcal Total: -68.66 1.63 -67.03 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000807847422.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.314 kcal (2) G-P(sol) polarization free energy of solvation -68.658 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.344 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.630 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.028 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.714 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds