Wall clock time and date at job start Tue Mar 31 2020 14:13:28
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50697 * 1
3 3 C 1.38134 * 120.47185 * 2 1
4 4 Cl 1.73597 * 119.59617 * 359.97438 * 3 2 1
5 5 N 1.32046 * 120.80558 * 179.97438 * 3 2 1
6 6 C 1.32014 * 121.87608 * 0.02562 * 5 3 2
7 7 C 1.37886 * 120.85301 * 359.74726 * 6 5 3
8 8 C 1.39318 * 120.46730 * 179.97438 * 2 1 3
9 9 N 1.39548 * 120.85017 * 359.97438 * 8 2 1
10 10 C 1.34778 * 119.99930 * 146.19756 * 9 8 2
11 11 O 1.21588 * 119.99680 * 4.20839 * 10 9 8
12 12 N 1.34774 * 120.00227 * 184.21190 * 10 9 8
13 13 C 1.46496 * 120.00207 * 179.97438 * 12 10 9
14 14 C 1.53004 * 109.47148 * 180.02562 * 13 12 10
15 15 C 1.53002 * 109.46631 * 299.99700 * 14 13 12
16 16 C 1.53000 * 109.47310 * 59.99771 * 14 13 12
17 17 C 1.52998 * 109.47163 * 179.97438 * 14 13 12
18 18 C 1.50691 * 109.47329 * 179.97438 * 17 14 13
19 19 H 1.08002 * 119.99797 * 359.97438 * 18 17 14
20 20 C 1.37874 * 120.00616 * 180.02562 * 18 17 14
21 21 N 1.31519 * 119.99781 * 0.02562 * 20 18 17
22 22 Si 1.86794 * 120.00497 * 179.97438 * 20 18 17
23 23 H 1.48499 * 109.46879 * 60.00126 * 22 20 18
24 24 H 1.48499 * 109.47401 * 179.97438 * 22 20 18
25 25 H 1.48498 * 109.47348 * 300.00348 * 22 20 18
26 26 H 1.08995 * 109.47137 * 270.02116 * 1 2 3
27 27 H 1.09001 * 109.47208 * 30.01727 * 1 2 3
28 28 H 1.08999 * 109.47369 * 150.02068 * 1 2 3
29 29 H 1.07995 * 119.57180 * 180.02562 * 6 5 3
30 30 H 1.07996 * 120.44876 * 180.28878 * 7 6 5
31 31 H 0.96999 * 119.99846 * 326.19490 * 9 8 2
32 32 H 0.97002 * 119.99598 * 0.02562 * 12 10 9
33 33 H 1.09007 * 109.47209 * 299.99670 * 13 12 10
34 34 H 1.08993 * 109.47038 * 59.99512 * 13 12 10
35 35 H 1.09003 * 109.46796 * 60.00503 * 15 14 13
36 36 H 1.09005 * 109.46381 * 180.02562 * 15 14 13
37 37 H 1.08991 * 109.47396 * 299.99829 * 15 14 13
38 38 H 1.09002 * 109.46675 * 59.99794 * 16 14 13
39 39 H 1.08994 * 109.47043 * 180.02562 * 16 14 13
40 40 H 1.09004 * 109.47082 * 300.00110 * 16 14 13
41 41 H 1.08999 * 109.47439 * 299.99982 * 17 14 13
42 42 H 1.09007 * 109.47077 * 59.99547 * 17 14 13
43 43 H 0.96990 * 120.00393 * 180.02562 * 21 20 18
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 6 2.2075 1.1905 0.0000
4 17 1.3413 2.6950 -0.0007
5 7 3.5279 1.1982 0.0005
6 6 4.2316 0.0813 0.0005
7 6 3.6069 -1.1480 0.0052
8 6 2.2134 -1.2008 0.0005
9 7 1.5436 -2.4251 0.0016
10 6 2.0708 -3.4822 -0.6472
11 8 3.1655 -3.3913 -1.1685
12 7 1.3846 -4.6400 -0.7183
13 6 1.9574 -5.7888 -1.4241
14 6 0.9828 -6.9664 -1.3570
15 6 0.7333 -7.3390 0.1059
16 6 -0.3406 -6.5713 -2.0155
17 6 1.5807 -8.1660 -2.0946
18 6 0.6211 -9.3260 -2.0279
19 1 -0.3209 -9.2184 -1.5108
20 6 0.9461 -10.5249 -2.6262
21 7 2.0939 -10.6564 -3.2547
22 14 -0.2432 -11.9630 -2.5430
23 1 -1.5281 -11.5802 -3.1814
24 1 0.3371 -13.1274 -3.2590
25 1 -0.4843 -12.3244 -1.1230
26 1 -0.3633 0.0004 1.0276
27 1 -0.3634 0.8898 -0.5141
28 1 -0.3634 -0.8901 -0.5135
29 1 5.3104 0.1310 0.0014
30 1 4.1890 -2.0577 0.0099
31 1 0.6986 -2.5152 0.4694
32 1 0.5111 -4.7123 -0.3028
33 1 2.1348 -5.5235 -2.4664
34 1 2.9004 -6.0699 -0.9553
35 1 0.3071 -6.4842 0.6309
36 1 0.0393 -8.1782 0.1536
37 1 1.6760 -7.6205 0.5750
38 1 -0.1627 -6.3057 -3.0576
39 1 -1.0350 -7.4100 -1.9672
40 1 -0.7668 -5.7165 -1.4903
41 1 1.7582 -7.9003 -3.1367
42 1 2.5237 -8.4476 -1.6258
43 1 2.3224 -11.4996 -3.6759
RHF calculation, no. of doubly occupied orbitals= 58
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000810291391.mol2 43
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 14:13:28
Heat of formation + Delta-G solvation = -16.055572 kcal
Electronic energy + Delta-G solvation = -24834.783231 eV
Core-core repulsion = 21133.424007 eV
Total energy + Delta-G solvation = -3701.359224 eV
No. of doubly occupied orbitals = 58
Molecular weight
(most abundant/longest-lived isotopes) = 325.130 amu
Computer time = 0.55 seconds
Orbital eigenvalues (eV)
-41.27701 -39.77985 -37.53354 -36.90147 -35.64602 -33.89630 -33.06268 -32.22760
-30.86579 -27.69148 -27.17617 -26.61829 -26.32527 -24.05026 -22.88086 -22.41062
-21.06434 -19.20143 -18.67571 -17.70539 -16.84556 -16.39749 -15.85663 -15.72591
-15.30388 -14.99575 -14.86132 -14.49808 -14.21969 -14.02300 -13.77987 -13.23189
-13.21055 -12.95899 -12.86013 -12.47691 -12.25785 -12.12098 -12.01362 -11.39298
-11.31799 -11.08748 -11.02997 -10.93375 -10.71008 -10.52191 -10.48693 -10.34257
-9.97816 -9.81877 -9.30256 -9.14398 -9.11423 -9.01924 -8.72805 -8.41288
-6.05401 -4.07233 0.66786 0.82405 1.49404 2.37513 2.94666 3.27846
3.33872 3.34545 3.41645 3.97421 4.18348 4.39923 4.40427 4.48820
4.82659 4.99483 5.17137 5.24286 5.29856 5.33621 5.41955 5.51111
5.62375 5.63993 5.73968 5.94335 6.04885 6.07850 6.11685 6.27569
6.37987 6.40267 6.53052 6.58899 6.66968 6.95388 6.97928 7.02522
7.48752 7.56419 7.68070 7.74368 7.92410 8.31889 8.35861 8.97123
9.56171 11.05926
Molecular weight = 325.13amu
Principal moments of inertia in cm(-1)
A = 0.033987 B = 0.002137 C = 0.002059
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 823.634842 B =13101.885636 C =13597.298150
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.114 4.114
2 C -0.156 4.156
3 C 0.189 3.811
4 Cl -0.032 7.032
5 N -0.492 5.492
6 C 0.128 3.872
7 C -0.167 4.167
8 C 0.228 3.772
9 N -0.683 5.683
10 C 0.700 3.300
11 O -0.570 6.570
12 N -0.726 5.726
13 C 0.144 3.856
14 C -0.072 4.072
15 C -0.127 4.127
16 C -0.127 4.127
17 C 0.037 3.963
18 C -0.513 4.513
19 H 0.059 0.941
20 C 0.057 3.943
21 N -0.894 5.894
22 Si 0.890 3.110
23 H -0.278 1.278
24 H -0.288 1.288
25 H -0.278 1.278
26 H 0.078 0.922
27 H 0.080 0.920
28 H 0.071 0.929
29 H 0.169 0.831
30 H 0.162 0.838
31 H 0.410 0.590
32 H 0.397 0.603
33 H 0.066 0.934
34 H 0.066 0.934
35 H 0.027 0.973
36 H 0.068 0.932
37 H 0.048 0.952
38 H 0.048 0.952
39 H 0.068 0.932
40 H 0.027 0.973
41 H 0.019 0.981
42 H 0.019 0.981
43 H 0.261 0.739
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -3.506 21.645 9.292 23.815
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.171 4.171
2 C -0.162 4.162
3 C 0.024 3.976
4 Cl -0.003 7.003
5 N -0.204 5.204
6 C -0.028 4.028
7 C -0.190 4.190
8 C 0.123 3.877
9 N -0.331 5.331
10 C 0.400 3.600
11 O -0.446 6.446
12 N -0.380 5.380
13 C 0.021 3.979
14 C -0.073 4.073
15 C -0.185 4.185
16 C -0.185 4.185
17 C -0.001 4.001
18 C -0.551 4.551
19 H 0.077 0.923
20 C -0.145 4.145
21 N -0.533 5.533
22 Si 0.718 3.282
23 H -0.203 1.203
24 H -0.214 1.214
25 H -0.203 1.203
26 H 0.096 0.904
27 H 0.099 0.901
28 H 0.090 0.910
29 H 0.186 0.814
30 H 0.179 0.821
31 H 0.247 0.753
32 H 0.232 0.768
33 H 0.084 0.916
34 H 0.085 0.915
35 H 0.046 0.954
36 H 0.087 0.913
37 H 0.067 0.933
38 H 0.067 0.933
39 H 0.087 0.913
40 H 0.046 0.954
41 H 0.037 0.963
42 H 0.037 0.963
43 H 0.071 0.929
Dipole moment (debyes) X Y Z Total
from point charges -2.052 22.377 8.661 24.082
hybrid contribution -1.868 -1.629 0.349 2.503
sum -3.920 20.748 9.009 22.957
Atomic orbital electron populations
1.20753 0.89212 1.04092 1.03085 1.20224 0.97968 0.90659 1.07362
1.21119 0.89663 0.86552 1.00217 1.98389 1.73710 1.31770 1.96462
1.67012 1.06214 1.32551 1.14653 1.22552 1.00203 0.85850 0.94198
1.22482 0.93563 1.01212 1.01756 1.17399 0.91322 0.83915 0.95069
1.42580 1.26440 1.08364 1.55692 1.15974 0.84479 0.80205 0.79354
1.90941 1.19781 1.82616 1.51274 1.45426 1.22198 1.11241 1.59143
1.21633 0.96965 0.83145 0.96123 1.20931 0.94631 0.95044 0.96651
1.21768 1.01760 1.00018 0.94909 1.21768 0.97391 0.99748 0.99543
1.19086 0.96067 0.89985 0.94959 1.21114 1.03535 0.96154 1.34344
0.92318 1.25014 0.95217 0.98752 0.95490 1.69946 1.21836 1.25771
1.35720 0.86700 0.81262 0.82148 0.78121 1.20327 1.21376 1.20322
0.90376 0.90102 0.91022 0.81406 0.82060 0.75343 0.76751 0.91569
0.91528 0.95370 0.91319 0.93259 0.93268 0.91320 0.95380 0.96262
0.96260 0.92915
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.11 -0.78 9.14 36.00 0.33 -0.45 16
2 C -0.16 -1.52 5.92 -104.26 -0.62 -2.14 16
3 C 0.19 2.08 7.27 -17.50 -0.13 1.95 16
4 Cl -0.03 -0.30 27.45 -51.86 -1.42 -1.72 16
5 N -0.49 -5.83 10.34 -10.45 -0.11 -5.93 16
6 C 0.13 1.34 11.17 -17.60 -0.20 1.14 16
7 C -0.17 -1.91 8.78 -39.26 -0.34 -2.26 16
8 C 0.23 2.47 6.33 -83.49 -0.53 1.94 16
9 N -0.68 -6.67 4.82 -14.07 -0.07 -6.74 16
10 C 0.70 9.25 8.43 -86.92 -0.73 8.52 16
11 O -0.57 -9.63 13.79 5.29 0.07 -9.56 16
12 N -0.73 -9.08 4.96 -65.23 -0.32 -9.40 16
13 C 0.14 2.31 4.56 -4.04 -0.02 2.29 16
14 C -0.07 -1.26 0.54 -154.51 -0.08 -1.34 16
15 C -0.13 -2.04 8.05 37.16 0.30 -1.74 16
16 C -0.13 -2.05 8.05 37.16 0.30 -1.75 16
17 C 0.04 0.85 4.04 -27.89 -0.11 0.74 16
18 C -0.51 -13.11 7.65 -34.45 -0.26 -13.37 16
19 H 0.06 1.43 5.68 -52.49 -0.30 1.14 16
20 C 0.06 1.53 5.46 -17.82 -0.10 1.44 16
21 N -0.89 -25.76 13.29 55.43 0.74 -25.02 16
22 Si 0.89 20.66 29.54 -169.99 -5.02 15.64 16
23 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16
24 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16
25 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16
26 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16
27 H 0.08 0.54 6.92 -51.93 -0.36 0.18 16
28 H 0.07 0.44 7.27 -51.93 -0.38 0.06 16
29 H 0.17 1.27 8.06 -52.49 -0.42 0.85 16
30 H 0.16 2.00 6.27 -52.49 -0.33 1.68 16
31 H 0.41 2.66 7.94 -40.82 -0.32 2.34 16
32 H 0.40 3.97 6.18 -40.82 -0.25 3.72 16
33 H 0.07 1.15 8.14 -51.92 -0.42 0.73 16
34 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16
35 H 0.03 0.35 6.86 -51.93 -0.36 -0.01 16
36 H 0.07 1.21 6.62 -51.93 -0.34 0.86 16
37 H 0.05 0.82 8.14 -51.93 -0.42 0.39 16
38 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16
39 H 0.07 1.21 6.62 -51.93 -0.34 0.87 16
40 H 0.03 0.35 6.86 -51.93 -0.36 0.00 16
41 H 0.02 0.49 8.14 -51.93 -0.42 0.06 16
42 H 0.02 0.49 8.14 -51.93 -0.42 0.06 16
43 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16
LS Contribution 361.45 15.07 5.45 5.45
Total: -1.00 -30.90 361.45 -8.74 -39.64
By element:
Atomic # 1 Polarization: 8.54 SS G_CDS: -5.86 Total: 2.68 kcal
Atomic # 6 Polarization: -2.83 SS G_CDS: -2.19 Total: -5.02 kcal
Atomic # 7 Polarization: -47.33 SS G_CDS: 0.24 Total: -47.09 kcal
Atomic # 8 Polarization: -9.63 SS G_CDS: 0.07 Total: -9.56 kcal
Atomic # 14 Polarization: 20.66 SS G_CDS: -5.02 Total: 15.64 kcal
Atomic # 17 Polarization: -0.30 SS G_CDS: -1.42 Total: -1.72 kcal
Total LS contribution 5.45 Total: 5.45 kcal
Total: -30.90 -8.74 -39.64 kcal
The number of atoms in the molecule is 43
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000810291391.mol2 43
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 23.584 kcal
(2) G-P(sol) polarization free energy of solvation -30.901 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.317 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.739 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.639 kcal
(6) G-S(sol) free energy of system = (1) + (5) -16.056 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.55 seconds